FFCP PHASE1:Mm9::chr1:6477452..6477459,+: Difference between revisions
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|id=chr1:6477452..6477459,+
|short_description=p8@St18
|description=CAGE_peak_8_at_St18_5end
|association_with_transcript=40bp_to_ENSMUST00000131494_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=240690 | |EntrezGene=240690 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=20 | |||
|TSSclassifier=NA | |||
|UniProt=Q80TY4 | |UniProt=Q80TY4 | ||
|association_with_transcript=40bp_to_ENSMUST00000131494_5end | |||
|cluster_id=chr1:6477452..6477459,+ | |||
|description=CAGE_peak_8_at_St18_5end | |||
|id=chr1:6477452..6477459,+ | |||
|ontology_enrichment_celltype=CL:0002610!7.66e-11!3;CL:0002614!1.39e-10!3 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.59e-25!63;UBERON:0002298!1.94e-20!6;UBERON:0002346!5.51e-20!71;UBERON:0003075!5.51e-20!71;UBERON:0007284!5.51e-20!71;UBERON:0002616!1.89e-18!49;UBERON:0000955!5.25e-18!50;UBERON:0006238!5.25e-18!50;UBERON:0007811!1.71e-17!86;UBERON:0004121!3.40e-17!102;UBERON:0000924!3.40e-17!102;UBERON:0006601!3.40e-17!102;UBERON:0000153!1.29e-15!94;UBERON:0003056!1.66e-15!49;UBERON:0001049!4.72e-15!52;UBERON:0005068!4.72e-15!52;UBERON:0006241!4.72e-15!52;UBERON:0007135!4.72e-15!52;UBERON:0001017!2.39e-14!73;UBERON:0005743!2.39e-14!73;UBERON:0000073!7.39e-14!75;UBERON:0001016!7.39e-14!75;UBERON:0002950!8.09e-14!4;UBERON:0001891!8.09e-14!4;UBERON:0009616!8.09e-14!4;UBERON:0000970!8.82e-12!9;UBERON:0000019!8.82e-12!9;UBERON:0000047!8.82e-12!9;UBERON:0004088!8.82e-12!9;UBERON:0002104!8.82e-12!9;UBERON:0001456!8.82e-12!9;UBERON:0003072!8.82e-12!9;UBERON:0003071!8.82e-12!9;UBERON:0004128!8.82e-12!9;UBERON:0004684!7.66e-11!3;UBERON:0002275!7.66e-11!3;UBERON:0002038!1.39e-10!3;UBERON:0002308!1.39e-10!3;UBERON:0009663!1.39e-10!3;UBERON:0009661!1.39e-10!3;UBERON:0006331!1.39e-10!3;UBERON:0000125!1.39e-10!3;UBERON:0003076!1.15e-09!12;UBERON:0003057!1.15e-09!12;UBERON:0001444!1.53e-09!11;UBERON:0004733!2.83e-09!6;UBERON:0004732!2.83e-09!6;UBERON:0002028!2.83e-09!6;UBERON:0007277!2.83e-09!6;UBERON:0000020!1.06e-08!12;UBERON:0001032!1.06e-08!12;UBERON:0004456!1.06e-08!12;UBERON:0001896!2.90e-08!2;UBERON:0005290!2.90e-08!2;UBERON:0010096!2.90e-08!2;UBERON:0005085!5.45e-08!13;UBERON:0003080!6.58e-08!40;UBERON:0002420!7.24e-07!8;UBERON:0007245!7.24e-07!8;UBERON:0010009!7.24e-07!8;UBERON:0010011!7.24e-07!8;UBERON:0000454!7.24e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,2.38e-26,2;UBERON:0002298,2.38e-26,2;UBERON:0005290,2.38e-26,2;UBERON:0010096,2.38e-26,2;UBERON:0002259,8.69e-14,1;UBERON:0002314,8.69e-14,1;UBERON:0004061,8.69e-14,1;UBERON:0006777,8.69e-14,1;UBERON:0005882,8.69e-14,1;UBERON:0002950,2.39e-13,4;UBERON:0001891,2.39e-13,4;UBERON:0009616,2.39e-13,4;UBERON:0010286,2.39e-13,4;UBERON:0003076,2.91e-10,12;UBERON:0003057,2.91e-10,12;UBERON:0004733,1.78e-09,6;UBERON:0004732,1.78e-09,6;UBERON:0002028,1.78e-09,6;UBERON:0007277,1.78e-09,6;UBERON:0001049,6.63e-09,52;UBERON:0005068,6.63e-09,52;UBERON:0006241,6.63e-09,52;UBERON:0007135,6.63e-09,52;UBERON:0001017,1.47e-08,73;UBERON:0000073,1.65e-08,54;UBERON:0001016,2.47e-08,75;UBERON:0002346,2.95e-07,64;UBERON:0003075,2.95e-07,64;UBERON:0007284,2.95e-07,64;UBERON:0002616,4.23e-07,46;UBERON:0000955,5.93e-07,47;UBERON:0006238,5.93e-07,47 | |||
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|short_description=p8@St18 | |||
}} | }} |
Latest revision as of 08:18, 27 September 2015
Short description: | p8@St18 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_St18_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | 40bp_to_ENSMUST00000131494_5end |
EntrezGene: | St18 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 2.38e-26 | 2 |
brainstem | 2.38e-26 | 2 |
myelencephalon | 2.38e-26 | 2 |
future myelencephalon | 2.38e-26 | 2 |
corpora quadrigemina | 8.69e-14 | 1 |
midbrain tectum | 8.69e-14 | 1 |
neural tube mantle layer | 8.69e-14 | 1 |
tectal plate | 8.69e-14 | 1 |
neural tube alar plate | 8.69e-14 | 1 |
regional part of midbrain | 2.39e-13 | 4 |
midbrain | 2.39e-13 | 4 |
presumptive midbrain | 2.39e-13 | 4 |
midbrain neural tube | 2.39e-13 | 4 |
posterior neural tube | 2.91e-10 | 12 |
chordal neural plate | 2.91e-10 | 12 |
segmental subdivision of hindbrain | 1.78e-09 | 6 |
segmental subdivision of nervous system | 1.78e-09 | 6 |
hindbrain | 1.78e-09 | 6 |
presumptive hindbrain | 1.78e-09 | 6 |
neural tube | 6.63e-09 | 52 |
neural rod | 6.63e-09 | 52 |
future spinal cord | 6.63e-09 | 52 |
neural keel | 6.63e-09 | 52 |
central nervous system | 1.47e-08 | 73 |
regional part of nervous system | 1.65e-08 | 54 |
nervous system | 2.47e-08 | 75 |
neurectoderm | 2.95e-07 | 64 |
neural plate | 2.95e-07 | 64 |
presumptive neural plate | 2.95e-07 | 64 |
regional part of brain | 4.23e-07 | 46 |
brain | 5.93e-07 | 47 |
future brain | 5.93e-07 | 47 |