FFCP PHASE1:Mm9::chr1:22516189..22516211,-: Difference between revisions
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{{FFCP|EntrezGene=116837|HGNC=|MCL_coexpression_id=20|UniProt=|association_with_transcript=-3bp_to_uc007alx.1_5end|description=CAGE_peak_9_at_Rims1_5end|id=chr1:22516189..22516211,-|ontology_enrichment_celltype=CL:0000117!2.92e-15!23;CL:0000337!2.92e-15!23;CL:0000540!8.69e-10!33;CL:0000047!8.69e-10!33;CL:0000031!8.69e-10!33;CL:0000404!8.69e-10!33;CL:0002610!6.48e-09!3;CL:0002614!1.56e-08!3;CL:0000393!7.28e-08!39;CL:0000211!7.28e-08!39;CL:0000221!8.38e-08!44;CL:0000133!8.38e-08!44;CL:0002612!2.47e-07!3;CL:0002319!6.92e-07!43|ontology_enrichment_celltype_v019_2=CL:0002610,7.30e-14,3;CL:0002614,3.16e-13,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!4.10e-32!52;UBERON:0005068!4.10e-32!52;UBERON:0006241!4.10e-32!52;UBERON:0007135!4.10e-32!52;UBERON:0002616!1.96e-27!49;UBERON:0001017!2.97e-27!73;UBERON:0005743!2.97e-27!73;UBERON:0000955!9.05e-27!50;UBERON:0006238!9.05e-27!50;UBERON:0000073!2.38e-26!75;UBERON:0001016!2.38e-26!75;UBERON:0002020!6.18e-24!34;UBERON:0002346!7.54e-22!71;UBERON:0003075!7.54e-22!71;UBERON:0007284!7.54e-22!71;UBERON:0000033!8.04e-22!63;UBERON:0003076!3.13e-19!12;UBERON:0003057!3.13e-19!12;UBERON:0004121!5.45e-19!102;UBERON:0000924!5.45e-19!102;UBERON:0006601!5.45e-19!102;UBERON:0003080!2.99e-16!40;UBERON:0002298!3.52e-16!6;UBERON:0002791!8.96e-16!29;UBERON:0003528!8.96e-16!29;UBERON:0001893!8.96e-16!29;UBERON:0002780!1.29e-14!39;UBERON:0001890!1.29e-14!39;UBERON:0006240!1.29e-14!39;UBERON:0007811!2.17e-14!86;UBERON:0002240!6.75e-14!6;UBERON:0005174!6.75e-14!6;UBERON:0001137!6.75e-14!6;UBERON:0000153!1.17e-12!94;UBERON:0003056!1.69e-12!49;UBERON:0001948!2.49e-11!5;UBERON:0002315!2.49e-11!5;UBERON:0000025!3.02e-11!114;UBERON:0004111!4.56e-11!122;UBERON:0002950!4.69e-11!4;UBERON:0001891!4.69e-11!4;UBERON:0009616!4.69e-11!4;UBERON:0002021!5.23e-11!10;UBERON:0000411!5.23e-11!10;UBERON:0001950!5.23e-11!10;UBERON:0002420!1.07e-10!8;UBERON:0007245!1.07e-10!8;UBERON:0010009!1.07e-10!8;UBERON:0010011!1.07e-10!8;UBERON:0000454!1.07e-10!8;UBERON:0004684!6.48e-09!3;UBERON:0002275!6.48e-09!3;UBERON:0002038!1.56e-08!3;UBERON:0002308!1.56e-08!3;UBERON:0009663!1.56e-08!3;UBERON:0009661!1.56e-08!3;UBERON:0006331!1.56e-08!3;UBERON:0000125!1.56e-08!3;UBERON:0002619!5.52e-08!17;UBERON:0000956!7.40e-08!21;UBERON:0001869!7.40e-08!21;UBERON:0000203!7.40e-08!21;UBERON:0000477!1.93e-07!154;UBERON:0004733!2.04e-07!6;UBERON:0004732!2.04e-07!6;UBERON:0002028!2.04e-07!6;UBERON:0007277!2.04e-07!6;UBERON:0002257!2.47e-07!3;UBERON:0000064!2.51e-07!99;UBERON:0001896!9.54e-07!2;UBERON:0005290!9.54e-07!2;UBERON:0010096!9.54e-07!2|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.42e-25,54;UBERON:0001049,6.50e-21,52;UBERON:0005068,6.50e-21,52;UBERON:0006241,6.50e-21,52;UBERON:0007135,6.50e-21,52;UBERON:0002616,6.69e-21,46;UBERON:0001017,1.59e-20,73;UBERON:0000955,2.12e-20,47;UBERON:0006238,2.12e-20,47;UBERON:0001016,6.71e-20,75;UBERON:0002950,1.92e-17,4;UBERON:0001891,1.92e-17,4;UBERON:0009616,1.92e-17,4;UBERON:0010286,1.92e-17,4;UBERON:0002346,1.78e-16,64;UBERON:0003075,1.78e-16,64;UBERON:0007284,1.78e-16,64;UBERON:0004121,4.47e-15,95;UBERON:0000924,4.47e-15,95;UBERON:0006601,4.47e-15,95;UBERON:0010371,4.24e-14,73;UBERON:0004684,7.30e-14,3;UBERON:0002275,7.30e-14,3;UBERON:0002038,3.16e-13,3;UBERON:0009663,3.16e-13,3;UBERON:0009661,3.16e-13,3;UBERON:0000125,3.16e-13,3;UBERON:0002308,3.16e-13,3;UBERON:0003080,4.06e-13,40;UBERON:0004733,8.36e-12,6;UBERON:0004732,8.36e-12,6;UBERON:0002028,8.36e-12,6;UBERON:0007277,8.36e-12,6;UBERON:0002780,3.81e-11,39;UBERON:0001890,3.81e-11,39;UBERON:0006240,3.81e-11,39;UBERON:0010314,1.34e-10,92;UBERON:0003056,2.40e-10,49;UBERON:0001896,3.00e-10,2;UBERON:0002298,3.00e-10,2;UBERON:0005290,3.00e-10,2;UBERON:0010096,3.00e-10,2;UBERON:0003528,3.23e-10,29;UBERON:0002791,3.23e-10,29;UBERON:0001893,3.23e-10,29;UBERON:0003076,4.72e-09,12;UBERON:0003057,4.72e-09,12;UBERON:0002420,9.20e-09,8;UBERON:0007245,9.20e-09,8;UBERON:0010009,9.20e-09,8;UBERON:0010011,9.20e-09,8;UBERON:0000454,9.20e-09,8;UBERON:0002020,1.58e-08,34;UBERON:0000025,5.41e-08,114;UBERON:0004111,2.82e-07,122|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571301968807607,0.883474163806454,0,0,0,4.40463523997555,3.19218345212969,2.61131106535614,0.131886287730194,0.0914876436024097,0,3.07101298901519,1.68828783009504,1.98637722109853,0.589257170947335,0.569486723196412,0.186399445825301,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46390398505774,1.46612694769419,0,0,0,0,6.89036941262184,3.66000482254901,0,0.695297280769106,2.30143911597297,3.53239675751252,2.43361894601636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10289948564127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.545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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=116837 | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-3bp_to_uc007alx.1_5end | |||
|cluster_id=chr1:22516189..22516211,- | |||
|description=CAGE_peak_9_at_Rims1_5end | |||
|id=chr1:22516189..22516211,- | |||
|ontology_enrichment_celltype=CL:0000117!2.92e-15!23;CL:0000337!2.92e-15!23;CL:0000540!8.69e-10!33;CL:0000047!8.69e-10!33;CL:0000031!8.69e-10!33;CL:0000404!8.69e-10!33;CL:0002610!6.48e-09!3;CL:0002614!1.56e-08!3;CL:0000393!7.28e-08!39;CL:0000211!7.28e-08!39;CL:0000221!8.38e-08!44;CL:0000133!8.38e-08!44;CL:0002612!2.47e-07!3;CL:0002319!6.92e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,7.30e-14,3;CL:0002614,3.16e-13,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.10e-32!52;UBERON:0005068!4.10e-32!52;UBERON:0006241!4.10e-32!52;UBERON:0007135!4.10e-32!52;UBERON:0002616!1.96e-27!49;UBERON:0001017!2.97e-27!73;UBERON:0005743!2.97e-27!73;UBERON:0000955!9.05e-27!50;UBERON:0006238!9.05e-27!50;UBERON:0000073!2.38e-26!75;UBERON:0001016!2.38e-26!75;UBERON:0002020!6.18e-24!34;UBERON:0002346!7.54e-22!71;UBERON:0003075!7.54e-22!71;UBERON:0007284!7.54e-22!71;UBERON:0000033!8.04e-22!63;UBERON:0003076!3.13e-19!12;UBERON:0003057!3.13e-19!12;UBERON:0004121!5.45e-19!102;UBERON:0000924!5.45e-19!102;UBERON:0006601!5.45e-19!102;UBERON:0003080!2.99e-16!40;UBERON:0002298!3.52e-16!6;UBERON:0002791!8.96e-16!29;UBERON:0003528!8.96e-16!29;UBERON:0001893!8.96e-16!29;UBERON:0002780!1.29e-14!39;UBERON:0001890!1.29e-14!39;UBERON:0006240!1.29e-14!39;UBERON:0007811!2.17e-14!86;UBERON:0002240!6.75e-14!6;UBERON:0005174!6.75e-14!6;UBERON:0001137!6.75e-14!6;UBERON:0000153!1.17e-12!94;UBERON:0003056!1.69e-12!49;UBERON:0001948!2.49e-11!5;UBERON:0002315!2.49e-11!5;UBERON:0000025!3.02e-11!114;UBERON:0004111!4.56e-11!122;UBERON:0002950!4.69e-11!4;UBERON:0001891!4.69e-11!4;UBERON:0009616!4.69e-11!4;UBERON:0002021!5.23e-11!10;UBERON:0000411!5.23e-11!10;UBERON:0001950!5.23e-11!10;UBERON:0002420!1.07e-10!8;UBERON:0007245!1.07e-10!8;UBERON:0010009!1.07e-10!8;UBERON:0010011!1.07e-10!8;UBERON:0000454!1.07e-10!8;UBERON:0004684!6.48e-09!3;UBERON:0002275!6.48e-09!3;UBERON:0002038!1.56e-08!3;UBERON:0002308!1.56e-08!3;UBERON:0009663!1.56e-08!3;UBERON:0009661!1.56e-08!3;UBERON:0006331!1.56e-08!3;UBERON:0000125!1.56e-08!3;UBERON:0002619!5.52e-08!17;UBERON:0000956!7.40e-08!21;UBERON:0001869!7.40e-08!21;UBERON:0000203!7.40e-08!21;UBERON:0000477!1.93e-07!154;UBERON:0004733!2.04e-07!6;UBERON:0004732!2.04e-07!6;UBERON:0002028!2.04e-07!6;UBERON:0007277!2.04e-07!6;UBERON:0002257!2.47e-07!3;UBERON:0000064!2.51e-07!99;UBERON:0001896!9.54e-07!2;UBERON:0005290!9.54e-07!2;UBERON:0010096!9.54e-07!2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.42e-25,54;UBERON:0001049,6.50e-21,52;UBERON:0005068,6.50e-21,52;UBERON:0006241,6.50e-21,52;UBERON:0007135,6.50e-21,52;UBERON:0002616,6.69e-21,46;UBERON:0001017,1.59e-20,73;UBERON:0000955,2.12e-20,47;UBERON:0006238,2.12e-20,47;UBERON:0001016,6.71e-20,75;UBERON:0002950,1.92e-17,4;UBERON:0001891,1.92e-17,4;UBERON:0009616,1.92e-17,4;UBERON:0010286,1.92e-17,4;UBERON:0002346,1.78e-16,64;UBERON:0003075,1.78e-16,64;UBERON:0007284,1.78e-16,64;UBERON:0004121,4.47e-15,95;UBERON:0000924,4.47e-15,95;UBERON:0006601,4.47e-15,95;UBERON:0010371,4.24e-14,73;UBERON:0004684,7.30e-14,3;UBERON:0002275,7.30e-14,3;UBERON:0002038,3.16e-13,3;UBERON:0009663,3.16e-13,3;UBERON:0009661,3.16e-13,3;UBERON:0000125,3.16e-13,3;UBERON:0002308,3.16e-13,3;UBERON:0003080,4.06e-13,40;UBERON:0004733,8.36e-12,6;UBERON:0004732,8.36e-12,6;UBERON:0002028,8.36e-12,6;UBERON:0007277,8.36e-12,6;UBERON:0002780,3.81e-11,39;UBERON:0001890,3.81e-11,39;UBERON:0006240,3.81e-11,39;UBERON:0010314,1.34e-10,92;UBERON:0003056,2.40e-10,49;UBERON:0001896,3.00e-10,2;UBERON:0002298,3.00e-10,2;UBERON:0005290,3.00e-10,2;UBERON:0010096,3.00e-10,2;UBERON:0003528,3.23e-10,29;UBERON:0002791,3.23e-10,29;UBERON:0001893,3.23e-10,29;UBERON:0003076,4.72e-09,12;UBERON:0003057,4.72e-09,12;UBERON:0002420,9.20e-09,8;UBERON:0007245,9.20e-09,8;UBERON:0010009,9.20e-09,8;UBERON:0010011,9.20e-09,8;UBERON:0000454,9.20e-09,8;UBERON:0002020,1.58e-08,34;UBERON:0000025,5.41e-08,114;UBERON:0004111,2.82e-07,122 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571301968807607,0.883474163806454,0,0,0,4.40463523997555,3.19218345212969,2.61131106535614,0.131886287730194,0.0914876436024097,0,3.07101298901519,1.68828783009504,1.98637722109853,0.589257170947335,0.569486723196412,0.186399445825301,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46390398505774,1.46612694769419,0,0,0,0,6.89036941262184,3.66000482254901,0,0.695297280769106,2.30143911597297,3.53239675751252,2.43361894601636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10289948564127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.54587772942622,6.91548950893999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.52956389248344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,1.14579102687879,1.03111909406213,0.685082519770642,0,0,0.900642406448441,1.35942722695261,1.03552062350364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114870937911227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0985044823755635,0,0,0,0,0,0,0,0,0 | |||
|short_description=p9@Rims1 | |||
}} |
Latest revision as of 01:09, 27 September 2015
Short description: | p9@Rims1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_Rims1_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | -3bp_to_uc007alx.1_5end |
EntrezGene: | Rims1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 7.30e-14 | 3 |
neuron of the substantia nigra | 3.16e-13 | 3 |