FFCP PHASE1:Mm9::chr9:40263366..40263397,-: Difference between revisions
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{{FFCP|EntrezGene=235283|HGNC=|MCL_coexpression_id=3|UniProt=Q80TI0|association_with_transcript=-17bp_to_ENSMUST00000045682,NM_172768,uc009ozq.1_5end|description=CAGE_peak_2_at_Gramd1b_5end|id=chr9:40263366..40263397,-|ontology_enrichment_celltype=CL:0000084!2.68e-08!11;CL:0000827!2.68e-08!11;CL:0000988!8.94e-08!32;CL:0002032!8.94e-08!32;CL:0000037!8.94e-08!32;CL:0000566!8.94e-08!32;CL:0000837!8.94e-08!32;CL:0000738!1.25e-07!17;CL:0002087!1.25e-07!17;CL:0000838!1.34e-07!12;CL:0000791!4.49e-07!9;CL:0000789!4.49e-07!9;CL:0002420!4.49e-07!9;CL:0002419!4.49e-07!9;CL:0000790!4.49e-07!9|ontology_enrichment_celltype_v019_2=CL:0000988,1.05e-10,32;CL:0002032,1.05e-10,32;CL:0000037,1.05e-10,32;CL:0000837,1.05e-10,32;CL:0000084,1.16e-09,11;CL:0000827,1.16e-09,11;CL:0000738,5.39e-09,17;CL:0002087,5.39e-09,17;CL:0000838,2.12e-08,12;CL:0000791,3.40e-08,9;CL:0000789,3.40e-08,9;CL:0002420,3.40e-08,9;CL:0002419,3.40e-08,9;CL:0000790,3.40e-08,9;CL:0002031,3.69e-08,25;CL:0002320,3.75e-08,46;CL:0000134,3.75e-08,46;CL:0000624,1.69e-07,8;CL:0000542,2.38e-07,13;CL:0000051,2.38e-07,13|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!2.99e-12!48;UBERON:0002390!1.32e-11!45;UBERON:0003061!1.32e-11!45;UBERON:0002405!1.22e-09!70;UBERON:0003081!4.87e-07!88;UBERON:0004177!7.52e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.40e-15,48;UBERON:0002405,1.40e-15,48;UBERON:0002390,8.41e-15,45;UBERON:0003061,8.41e-15,45;UBERON:0000926,1.51e-10,120;UBERON:0004120,1.51e-10,120;UBERON:0006603,1.51e-10,120;UBERON:0000077,1.01e-08,35;UBERON:0004177,1.34e-08,29;UBERON:0005057,1.34e-08,29;UBERON:0002384,3.75e-08,46;UBERON:0002371,2.84e-07,16;UBERON:0003408,4.24e-07,24;UBERON:0001474,4.50e-07,22;UBERON:0004765,4.50e-07,22;UBERON:0001434,4.50e-07,22;UBERON:0003081,4.84e-07,87;UBERON:0002204,7.20e-07,32|phase1_expression=0.160148847104794,4.18770489167233,5.45999087267443,9.0739263392049,7.51343594919521,2.18243053485457,1.63528848416868,14.9783055192228,18.3025338797167,44.0041309485348,27.7373108525318,32.2279522341159,10.785645985666,14.5117868015536,2.6648780945253,1.41732687172878,0,2.68142840554502,2.87940310572051,4.66828616977833,1.78590909317247,12.4113689001107,13.5823890352246,1.11994695955385,1.60586496747019,1.72269589234506,3.01533397311352,3.23206849028834,1.14014051673824,1.76421090831952,2.43903561720835,0,0,0,0.577703239502549,0.498703936075477,0.816677425049476,62.7797446105362,34.3787551590472,48.6877081895632,68.2348526115977,58.7419117064263,62.6308355410188,0.377690453926732,0.405507724878058,0.367093504323363,1.56478268869608,0.218025156380447,0.219686182734472,0,0.419959264876088,0,0.671130424230945,10.8804321301702,11.7632829699862,0.257259436035947,1.43266719969378,1.54701627683233,0.202316460859598,0,0.633831403506179,0,0.889294796111139,11.2487464660175,14.8329954385046,7.8152812644071,3.29560121570245,2.68952813725088,0.518448061542388,0.405017814995072,0.420649922702764,0,0.220868540951614,0.244981598429908,0.0958454710182364,0,2.20231761998777,0,0,0.263772575460388,0,1.04182674111352,0,0,0.15279824777681,0.294628585473668,0.142371680799103,0.372798891650601,0.530083353332288,0.529000920747499,4.92769630792852,1.72084775396277,0,0,0.649776417447669,0,1.96622188184453,0,0,0,0.422530259330042,0,0,0,0.216491041011214,0.760079596425296,0,1.1418387971906,12.1700805314171,5.19547486726887,1.21439728736295,3.65358573974569,5.99600292865752,4.97384713823654,6.58496759959947,3.89566433121994,0,1.01219549843938,12.3845477272982,1.13236794963186,4.19598885074748,1.93950101254089,1.86391761218122,0.292780797011547,0.209446706813455,4.34276993854605,8.8663192134381,5.39912457894067,5.46401976414178,0.449371918214468,0.457500602818626,0,0.173824320192276,0,0.41557608911912,0.486723789203273,0.81471491080253,6.59356944233493,1.26361379216837,1.05220927943237,0.130120442962704,0,0,1.05493372485001,0.272145996605311,0.512454881139399,0.187403449119458,1.55222022443409,0,0,0.175951124163949,0.43839146485515,0.278047249225598,1.0447564995665,0.823128545631774,0,5.61770549850588,5.91900186363845,5.96743348730745,0.207125772535502,0.469052119962192,0.900310307305074,0.710234206755631,0.590292695242212,0.462801338662135,0.697601834251224,0,1.05088808130453,0.493679549740441,0.985004784474571,1.4592385718254,0.584799949701329,0.878200461164203,0.805238512562231,0.210289948564127,0.823236899034275,9.58214470653014,2.64450566663544,0,0,0.515469845288373,0.80673409849337,0.667134131534611,0.951128130562796,1.89811624617805,0.988193728344065,1.75934646160189,0.795825888164603,0.58489226135736,3.59527763461689,2.80979464837102,1.1948476395262,0,0.456994050438915,0,0.407302655690628,0.775809948670503,0.140271639780637,0.252946148497029,0.442830443938806,0.470996183524124,0.246794327843601,0.592905254174298,0.500535317148282,0.589676985339609,0.449724224769707,0.811440485554012,0.72353147925725,0.763877555344259,3.45235364940973,2.43202840162553,1.64736847912849,1.43768206527355,1.86070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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=235283 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|TSSclassifier=NA | |||
|UniProt=Q80TI0 | |||
|association_with_transcript=-17bp_to_ENSMUST00000045682,NM_172768,uc009ozq.1_5end | |||
|cluster_id=chr9:40263366..40263397,- | |||
|description=CAGE_peak_2_at_Gramd1b_5end | |||
|id=chr9:40263366..40263397,- | |||
|ontology_enrichment_celltype=CL:0000084!2.68e-08!11;CL:0000827!2.68e-08!11;CL:0000988!8.94e-08!32;CL:0002032!8.94e-08!32;CL:0000037!8.94e-08!32;CL:0000566!8.94e-08!32;CL:0000837!8.94e-08!32;CL:0000738!1.25e-07!17;CL:0002087!1.25e-07!17;CL:0000838!1.34e-07!12;CL:0000791!4.49e-07!9;CL:0000789!4.49e-07!9;CL:0002420!4.49e-07!9;CL:0002419!4.49e-07!9;CL:0000790!4.49e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.05e-10,32;CL:0002032,1.05e-10,32;CL:0000037,1.05e-10,32;CL:0000837,1.05e-10,32;CL:0000084,1.16e-09,11;CL:0000827,1.16e-09,11;CL:0000738,5.39e-09,17;CL:0002087,5.39e-09,17;CL:0000838,2.12e-08,12;CL:0000791,3.40e-08,9;CL:0000789,3.40e-08,9;CL:0002420,3.40e-08,9;CL:0002419,3.40e-08,9;CL:0000790,3.40e-08,9;CL:0002031,3.69e-08,25;CL:0002320,3.75e-08,46;CL:0000134,3.75e-08,46;CL:0000624,1.69e-07,8;CL:0000542,2.38e-07,13;CL:0000051,2.38e-07,13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.99e-12!48;UBERON:0002390!1.32e-11!45;UBERON:0003061!1.32e-11!45;UBERON:0002405!1.22e-09!70;UBERON:0003081!4.87e-07!88;UBERON:0004177!7.52e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.40e-15,48;UBERON:0002405,1.40e-15,48;UBERON:0002390,8.41e-15,45;UBERON:0003061,8.41e-15,45;UBERON:0000926,1.51e-10,120;UBERON:0004120,1.51e-10,120;UBERON:0006603,1.51e-10,120;UBERON:0000077,1.01e-08,35;UBERON:0004177,1.34e-08,29;UBERON:0005057,1.34e-08,29;UBERON:0002384,3.75e-08,46;UBERON:0002371,2.84e-07,16;UBERON:0003408,4.24e-07,24;UBERON:0001474,4.50e-07,22;UBERON:0004765,4.50e-07,22;UBERON:0001434,4.50e-07,22;UBERON:0003081,4.84e-07,87;UBERON:0002204,7.20e-07,32 | |||
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| |||
|short_description=p2@Gramd1b | |||
}} |
Latest revision as of 15:18, 26 September 2015
Short description: | p2@Gramd1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gramd1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | -17bp_to_ENSMUST00000045682, NM_172768, uc009ozq.1_5end |
EntrezGene: | Gramd1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.05e-10 | 32 |
hematopoietic oligopotent progenitor cell | 1.05e-10 | 32 |
hematopoietic stem cell | 1.05e-10 | 32 |
hematopoietic multipotent progenitor cell | 1.05e-10 | 32 |
T cell | 1.16e-09 | 11 |
pro-T cell | 1.16e-09 | 11 |
leukocyte | 5.39e-09 | 17 |
nongranular leukocyte | 5.39e-09 | 17 |
lymphoid lineage restricted progenitor cell | 2.12e-08 | 12 |
mature alpha-beta T cell | 3.40e-08 | 9 |
alpha-beta T cell | 3.40e-08 | 9 |
immature T cell | 3.40e-08 | 9 |
mature T cell | 3.40e-08 | 9 |
immature alpha-beta T cell | 3.40e-08 | 9 |
hematopoietic lineage restricted progenitor cell | 3.69e-08 | 25 |
connective tissue cell | 3.75e-08 | 46 |
mesenchymal cell | 3.75e-08 | 46 |
CD4-positive, alpha-beta T cell | 1.69e-07 | 8 |
lymphocyte | 2.38e-07 | 13 |
common lymphoid progenitor | 2.38e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.40e-15 | 48 |
immune system | 1.40e-15 | 48 |
hematopoietic system | 8.41e-15 | 45 |
blood island | 8.41e-15 | 45 |
mesoderm | 1.51e-10 | 120 |
mesoderm-derived structure | 1.51e-10 | 120 |
presumptive mesoderm | 1.51e-10 | 120 |
mixed endoderm/mesoderm-derived structure | 1.01e-08 | 35 |
hemopoietic organ | 1.34e-08 | 29 |
immune organ | 1.34e-08 | 29 |
connective tissue | 3.75e-08 | 46 |
bone marrow | 2.84e-07 | 16 |
gland of gut | 4.24e-07 | 24 |
bone element | 4.50e-07 | 22 |
skeletal element | 4.50e-07 | 22 |
skeletal system | 4.50e-07 | 22 |
lateral plate mesoderm | 4.84e-07 | 87 |
musculoskeletal system | 7.20e-07 | 32 |