FFCP PHASE1:Mm9::chr4:130348395..130348423,+: Difference between revisions
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{{FFCP|EntrezGene=20970|HGNC=|MCL_coexpression_id=87|UniProt=Q64519,B1ASF5|association_with_transcript=-28bp_to_ENSMUST00000070478,NM_011520,uc008uzr.1_5end|description=CAGE_peak_2_at_Sdc3_5end|id=chr4:130348395..130348423,+|ontology_enrichment_celltype=CL:0000221!1.39e-15!44;CL:0000133!1.39e-15!44;CL:0002319!1.69e-15!43;CL:0000117!4.14e-15!23;CL:0000337!4.14e-15!23;CL:0000055!1.18e-14!50;CL:0000540!4.44e-13!33;CL:0000047!4.44e-13!33;CL:0000031!4.44e-13!33;CL:0000404!4.44e-13!33;CL:0000393!5.31e-12!39;CL:0000211!5.31e-12!39|ontology_enrichment_celltype_v019_2=CL:0000117,3.10e-23,23;CL:0000337,3.10e-23,23;CL:0002319,1.71e-15,43;CL:0000221,6.74e-15,44;CL:0000133,6.74e-15,44;CL:0000540,9.17e-15,33;CL:0000047,9.17e-15,33;CL:0000031,9.17e-15,33;CL:0000404,9.17e-15,33;CL:0000393,6.06e-13,39;CL:0000211,6.06e-13,39;CL:0002321,1.41e-07,70;CL:0002609,6.08e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!8.04e-24!75;UBERON:0001016!8.04e-24!75;UBERON:0001017!1.01e-22!73;UBERON:0005743!1.01e-22!73;UBERON:0004121!1.47e-21!102;UBERON:0000924!1.47e-21!102;UBERON:0006601!1.47e-21!102;UBERON:0002020!3.88e-18!34;UBERON:0002346!4.15e-18!71;UBERON:0003075!4.15e-18!71;UBERON:0007284!4.15e-18!71;UBERON:0001049!1.51e-17!52;UBERON:0005068!1.51e-17!52;UBERON:0006241!1.51e-17!52;UBERON:0007135!1.51e-17!52;UBERON:0000955!2.73e-15!50;UBERON:0006238!2.73e-15!50;UBERON:0002616!5.18e-15!49;UBERON:0002791!1.55e-14!29;UBERON:0003528!1.55e-14!29;UBERON:0001893!1.55e-14!29;UBERON:0000033!2.45e-13!63;UBERON:0003080!2.41e-12!40;UBERON:0002780!7.25e-12!39;UBERON:0001890!7.25e-12!39;UBERON:0006240!7.25e-12!39;UBERON:0003056!6.26e-11!49;UBERON:0000956!7.61e-10!21;UBERON:0001869!7.61e-10!21;UBERON:0000203!7.61e-10!21;UBERON:0002619!1.07e-07!17;UBERON:0000468!1.15e-07!333;UBERON:0000153!8.31e-07!94;UBERON:0000025!9.62e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.74e-27,75;UBERON:0001017,1.06e-25,73;UBERON:0002020,2.54e-25,34;UBERON:0000073,2.03e-24,54;UBERON:0001049,4.72e-23,52;UBERON:0005068,4.72e-23,52;UBERON:0006241,4.72e-23,52;UBERON:0007135,4.72e-23,52;UBERON:0004121,1.89e-20,95;UBERON:0000924,1.89e-20,95;UBERON:0006601,1.89e-20,95;UBERON:0003528,1.07e-19,29;UBERON:0002791,1.07e-19,29;UBERON:0001893,1.07e-19,29;UBERON:0002346,3.82e-19,64;UBERON:0003075,3.82e-19,64;UBERON:0007284,3.82e-19,64;UBERON:0000955,1.30e-17,47;UBERON:0006238,1.30e-17,47;UBERON:0010314,3.10e-17,92;UBERON:0002616,3.47e-17,46;UBERON:0003080,1.73e-16,40;UBERON:0002780,9.46e-16,39;UBERON:0001890,9.46e-16,39;UBERON:0006240,9.46e-16,39;UBERON:0010371,5.45e-15,73;UBERON:0003056,1.83e-14,49;UBERON:0000956,2.10e-12,21;UBERON:0001869,2.10e-12,21;UBERON:0000203,2.10e-12,21;UBERON:0002619,4.07e-09,17;UBERON:0002420,9.01e-09,8;UBERON:0007245,9.01e-09,8;UBERON:0010009,9.01e-09,8;UBERON:0010011,9.01e-09,8;UBERON:0000454,9.01e-09,8;UBERON:0002240,8.26e-08,6;UBERON:0005174,8.26e-08,6;UBERON:0001137,8.26e-08,6;UBERON:0003076,2.96e-07,12;UBERON:0003057,2.96e-07,12;UBERON:0001948,4.75e-07,5;UBERON:0002315,4.75e-07,5;UBERON:0002021,7.20e-07,10;UBERON:0000411,7.20e-07,10;UBERON:0001950,7.20e-07,10|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0.140788722151667,0,0,0.159544317990673,0,0,0.999329285446988,0.202475267389826,0,0.157731082679119,0,0.42438965179803,1.02051948181284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.304130793658544,0.367093504323363,0.782391344348039,0.65407546914134,0.659058548203415,0.388859798148567,0.699932108126813,2.87505128729943,0,0,0,1.28629718017973,0.286533439938757,1.03134418455488,10.1158230429799,11.6378015439847,10.775133859605,1.0165335962074,0,3.1496490104849,0.988866362566974,5.6838409195688,8.08920298399693,11.5265491596466,4.56234294157302,4.86021377994086,3.78584930432488,16.2821061110168,14.3564551618549,3.1847607795888,4.2172007248024,8.27296907949019,1.10115880999389,4.59674417106676,3.5329502648936,13.0567424852892,19.3038928001084,11.4600941522487,5.02529398202486,1.68828783009504,2.13917546887534,18.8562294703147,15.5185132071022,10.9975673036927,2.72614295999463,2.04043212288321,0,0.860423876981386,0,0,0,0,0.702222100658759,0.340860645156116,0.259786004602869,0,0.845060518660083,5.13305909657271,0,0,0,0,0,0,0.776813650941515,1.63286352971307,1.38788261412909,1.21786191324856,1.38369298353635,1.80867168663147,1.64624189989987,2.63899841792318,0,0,0,0.323533699894818,0.441683036920787,0,0,1.17112318804619,1.04723353406728,0.255457055208591,0.11981512450592,0,0,2.54644086988199,3.66000482254901,7.91622418311046,2.25971616249959,1.27857728665165,2.28566849015516,1.94689515681309,1.32391173005411,0.248813941220186,0.252722758433675,0,0.260240885925407,0,0.900310649026746,1.20563854268572,1.7009124787832,0.768682321709099,1.59292931751539,0,1.5089759505299,1.70195472151037,1.05570674498369,0.876782929710299,0.278047249225598,0.348252166522167,0.205782136407943,0.398068533636986,0,0,0,1.65700618028402,0.469052119962192,1.08037236876609,0.946978942340841,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20970 | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|TSSclassifier=NA | |||
|UniProt=Q64519,B1ASF5 | |||
|association_with_transcript=-28bp_to_ENSMUST00000070478,NM_011520,uc008uzr.1_5end | |||
|cluster_id=chr4:130348395..130348423,+ | |||
|description=CAGE_peak_2_at_Sdc3_5end | |||
|id=chr4:130348395..130348423,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.39e-15!44;CL:0000133!1.39e-15!44;CL:0002319!1.69e-15!43;CL:0000117!4.14e-15!23;CL:0000337!4.14e-15!23;CL:0000055!1.18e-14!50;CL:0000540!4.44e-13!33;CL:0000047!4.44e-13!33;CL:0000031!4.44e-13!33;CL:0000404!4.44e-13!33;CL:0000393!5.31e-12!39;CL:0000211!5.31e-12!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.10e-23,23;CL:0000337,3.10e-23,23;CL:0002319,1.71e-15,43;CL:0000221,6.74e-15,44;CL:0000133,6.74e-15,44;CL:0000540,9.17e-15,33;CL:0000047,9.17e-15,33;CL:0000031,9.17e-15,33;CL:0000404,9.17e-15,33;CL:0000393,6.06e-13,39;CL:0000211,6.06e-13,39;CL:0002321,1.41e-07,70;CL:0002609,6.08e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.04e-24!75;UBERON:0001016!8.04e-24!75;UBERON:0001017!1.01e-22!73;UBERON:0005743!1.01e-22!73;UBERON:0004121!1.47e-21!102;UBERON:0000924!1.47e-21!102;UBERON:0006601!1.47e-21!102;UBERON:0002020!3.88e-18!34;UBERON:0002346!4.15e-18!71;UBERON:0003075!4.15e-18!71;UBERON:0007284!4.15e-18!71;UBERON:0001049!1.51e-17!52;UBERON:0005068!1.51e-17!52;UBERON:0006241!1.51e-17!52;UBERON:0007135!1.51e-17!52;UBERON:0000955!2.73e-15!50;UBERON:0006238!2.73e-15!50;UBERON:0002616!5.18e-15!49;UBERON:0002791!1.55e-14!29;UBERON:0003528!1.55e-14!29;UBERON:0001893!1.55e-14!29;UBERON:0000033!2.45e-13!63;UBERON:0003080!2.41e-12!40;UBERON:0002780!7.25e-12!39;UBERON:0001890!7.25e-12!39;UBERON:0006240!7.25e-12!39;UBERON:0003056!6.26e-11!49;UBERON:0000956!7.61e-10!21;UBERON:0001869!7.61e-10!21;UBERON:0000203!7.61e-10!21;UBERON:0002619!1.07e-07!17;UBERON:0000468!1.15e-07!333;UBERON:0000153!8.31e-07!94;UBERON:0000025!9.62e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.74e-27,75;UBERON:0001017,1.06e-25,73;UBERON:0002020,2.54e-25,34;UBERON:0000073,2.03e-24,54;UBERON:0001049,4.72e-23,52;UBERON:0005068,4.72e-23,52;UBERON:0006241,4.72e-23,52;UBERON:0007135,4.72e-23,52;UBERON:0004121,1.89e-20,95;UBERON:0000924,1.89e-20,95;UBERON:0006601,1.89e-20,95;UBERON:0003528,1.07e-19,29;UBERON:0002791,1.07e-19,29;UBERON:0001893,1.07e-19,29;UBERON:0002346,3.82e-19,64;UBERON:0003075,3.82e-19,64;UBERON:0007284,3.82e-19,64;UBERON:0000955,1.30e-17,47;UBERON:0006238,1.30e-17,47;UBERON:0010314,3.10e-17,92;UBERON:0002616,3.47e-17,46;UBERON:0003080,1.73e-16,40;UBERON:0002780,9.46e-16,39;UBERON:0001890,9.46e-16,39;UBERON:0006240,9.46e-16,39;UBERON:0010371,5.45e-15,73;UBERON:0003056,1.83e-14,49;UBERON:0000956,2.10e-12,21;UBERON:0001869,2.10e-12,21;UBERON:0000203,2.10e-12,21;UBERON:0002619,4.07e-09,17;UBERON:0002420,9.01e-09,8;UBERON:0007245,9.01e-09,8;UBERON:0010009,9.01e-09,8;UBERON:0010011,9.01e-09,8;UBERON:0000454,9.01e-09,8;UBERON:0002240,8.26e-08,6;UBERON:0005174,8.26e-08,6;UBERON:0001137,8.26e-08,6;UBERON:0003076,2.96e-07,12;UBERON:0003057,2.96e-07,12;UBERON:0001948,4.75e-07,5;UBERON:0002315,4.75e-07,5;UBERON:0002021,7.20e-07,10;UBERON:0000411,7.20e-07,10;UBERON:0001950,7.20e-07,10 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0.140788722151667,0,0,0.159544317990673,0,0,0.999329285446988,0.202475267389826,0,0.157731082679119,0,0.42438965179803,1.02051948181284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.304130793658544,0.367093504323363,0.782391344348039,0.65407546914134,0.659058548203415,0.388859798148567,0.699932108126813,2.87505128729943,0,0,0,1.28629718017973,0.286533439938757,1.03134418455488,10.1158230429799,11.6378015439847,10.775133859605,1.0165335962074,0,3.1496490104849,0.988866362566974,5.6838409195688,8.08920298399693,11.5265491596466,4.56234294157302,4.86021377994086,3.78584930432488,16.2821061110168,14.3564551618549,3.1847607795888,4.2172007248024,8.27296907949019,1.10115880999389,4.59674417106676,3.5329502648936,13.0567424852892,19.3038928001084,11.4600941522487,5.02529398202486,1.68828783009504,2.13917546887534,18.8562294703147,15.5185132071022,10.9975673036927,2.72614295999463,2.04043212288321,0,0.860423876981386,0,0,0,0,0.702222100658759,0.340860645156116,0.259786004602869,0,0.845060518660083,5.13305909657271,0,0,0,0,0,0,0.776813650941515,1.63286352971307,1.38788261412909,1.21786191324856,1.38369298353635,1.80867168663147,1.64624189989987,2.63899841792318,0,0,0,0.323533699894818,0.441683036920787,0,0,1.17112318804619,1.04723353406728,0.255457055208591,0.11981512450592,0,0,2.54644086988199,3.66000482254901,7.91622418311046,2.25971616249959,1.27857728665165,2.28566849015516,1.94689515681309,1.32391173005411,0.248813941220186,0.252722758433675,0,0.260240885925407,0,0.900310649026746,1.20563854268572,1.7009124787832,0.768682321709099,1.59292931751539,0,1.5089759505299,1.70195472151037,1.05570674498369,0.876782929710299,0.278047249225598,0.348252166522167,0.205782136407943,0.398068533636986,0,0,0,1.65700618028402,0.469052119962192,1.08037236876609,0.946978942340841,0.787056926989615,0.308534225774757,0.232533944750408,0,0.116765342367169,0.658239399653922,0.164167464079095,0,0.438599962275997,0.219550115291051,0,1.47202963994889,8.64398743985989,0,0,0.853153002140936,0.928946687441754,0.644337306610467,0.605050573870028,0.22237804384487,0.380451252225118,0,0.658795818896044,0.251335208800269,0.198956472041151,0.19496408711912,0,0,0,0.569003702859245,0.228497025219458,0,0,0,0.280543279561274,0.0632365371242573,0.147610147979602,0,0.123397163921801,0.296452627087149,0.667380422864376,0.196558995113203,0.224862112384854,0.405720242777006,0.482354319504834,0.50925170356284,0.287696137450811,0.162135226775035,0,1.43768206527355,0.372140947668503,0.312037673114561,0.505157755894224,0.358794827043824,0.482443521363367,0,0.757965647081939,0.325929952884052,0.169745085775188,0.234690248288502,0.335012514883631,0.238043640886014,0,0.157635144106191,0.44292937929755,0.159454768657487,0,0.172684981865896,0,1.50791283939272,2.71952841909355,0,0.275936746304732,1.60550589987792,2.22702204525186,0.163934945376675,0,0,0.780877488593277,0.861693590931196,1.67278158566786,0.668396022247182,0.566153061577665,0.404810701674894,0.292255857911312,0.790575555893047,1.28528526568723,0.141940085208269,0.534196811001766,0.81443479676788,0.164970122972535,0,0.971122544619926,0.604647113929502,0,0.295301892880773,0,0,0.363533729477506,0.356497378384721,0.316036757935816,0,0,0.340439605753788,0.18006109403131,1.16422815404479,0,0.177340233642274,0.713475270408282,0.329098041204242,0,0,0,0,0.49465875882444,0.322928853391811,0.482503399425247,0.119372344003136,0,0,2.78137953015765,0.683483523191411,0.206386867963223,0.370389054739423,0,0.136694227721025,0.228778173206523,0,0,0,0,0.632671987162271,0.203319467126849,0.216010681643603,0.209088296014469,0.218362563746178,0.404593039154462,0.743881101528023,0,0,0,0,0.897099276263873,0.992750942742586,0.583353565032143,0.516639293910924,0.337912250981556,1.40828686374905,0.39061315453185,0,0,0,0,0.405450430580328,0.308132871494482,0.389762468933385,0,0.198681354781265,0,0.147689527174577,0,0.0762068066549998,0.100826185136841,0,0.288635524920988,0.116876902181569,0.453460767230423,0.221985953374065,0,0.167884616364078,0.965947970160952,0.750729901804728,0.36630324853453,0,0.501572104035363,3.3885110557024,3.22227665555024,4.01026859407578,2.57779773515531,1.37016503954128,2.2661816921691,4.72515750162264,0.900642406448441,1.81256963593682,1.55328093525546,0.518936737920883,0.798049746802062,2.04880326904961,1.70174701947806,0.838452650511929,1.2869045591501,0.666740183404846,0.824140228955577,0.962757628775446,2.02157769411038,1.01391719956096,1.50901073108861,1.49826411951812,1.72867911493147,2.12511235135769,0.952587382566147,1.39061191133827,0.964546102318525,1.64834360321323,1.32479028120958,0.342869252385415,0.887379030796687,0.715308569841963,1.59881058295561,1.12931256498397,1.18460451048347,1.46342378298218,0.789209134313529,0.950628796921032,0,2.25406534435931,1.97008964751127,0.409231043169689,1.39443157067369,0.578719832943424,3.99696924700713,1.16965804222704,1.28922632428979,0.956441660344217,0.661774257358546,0.231867835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| |||
|short_description=p2@Sdc3 | |||
}} |
Latest revision as of 10:07, 26 September 2015
Short description: | p2@Sdc3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Sdc3_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | -28bp_to_ENSMUST00000070478, NM_011520, uc008uzr.1_5end |
EntrezGene: | Sdc3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.10e-23 | 23 |
neuroblast (sensu Vertebrata) | 3.10e-23 | 23 |
neural cell | 1.71e-15 | 43 |
ectodermal cell | 6.74e-15 | 44 |
neurectodermal cell | 6.74e-15 | 44 |
neuron | 9.17e-15 | 33 |
neuronal stem cell | 9.17e-15 | 33 |
neuroblast | 9.17e-15 | 33 |
electrically signaling cell | 9.17e-15 | 33 |
electrically responsive cell | 6.06e-13 | 39 |
electrically active cell | 6.06e-13 | 39 |
embryonic cell | 1.41e-07 | 70 |
neuron of cerebral cortex | 6.08e-07 | 6 |