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FFCP PHASE1:Mm9::chr19:46119839..46119850,-: Difference between revisions

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{{FFCP
{{FFCP
|id=chr19:46119839..46119850,-
|DHSsupport=NA
|short_description=p13@Ldb1
|DPIdataset=NA
|description=CAGE_peak_13_at_Ldb1_5end
|association_with_transcript=-135bp_to_ENSMUST00000152946_5end
|EntrezGene=16825
|EntrezGene=16825
|HGNC=
|HGNC=
|MCL_coexpression_id=2265
|TSSclassifier=NA
|UniProt=D3Z1C5
|UniProt=D3Z1C5
|association_with_transcript=-135bp_to_ENSMUST00000152946_5end
|cluster_id=chr19:46119839..46119850,-
|description=CAGE_peak_13_at_Ldb1_5end
|id=chr19:46119839..46119850,-
|ontology_enrichment_celltype=CL:0000117!2.49e-08!23;CL:0000337!2.49e-08!23
|ontology_enrichment_celltype_v019_2=CL:0000117,6.12e-11,23;CL:0000337,6.12e-11,23;CL:0002609,1.06e-10,6
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0002020!2.89e-16!34;UBERON:0001049!9.88e-16!52;UBERON:0005068!9.88e-16!52;UBERON:0006241!9.88e-16!52;UBERON:0007135!9.88e-16!52;UBERON:0001017!7.15e-15!73;UBERON:0005743!7.15e-15!73;UBERON:0002791!1.43e-14!29;UBERON:0003528!1.43e-14!29;UBERON:0001893!1.43e-14!29;UBERON:0002346!2.41e-14!71;UBERON:0003075!2.41e-14!71;UBERON:0007284!2.41e-14!71;UBERON:0000073!4.41e-14!75;UBERON:0001016!4.41e-14!75;UBERON:0000955!1.21e-13!50;UBERON:0006238!1.21e-13!50;UBERON:0000153!4.01e-13!94;UBERON:0002616!5.42e-13!49;UBERON:0003080!6.65e-13!40;UBERON:0002780!1.49e-12!39;UBERON:0001890!1.49e-12!39;UBERON:0006240!1.49e-12!39;UBERON:0004121!2.47e-12!102;UBERON:0000924!2.47e-12!102;UBERON:0006601!2.47e-12!102;UBERON:0000033!2.50e-12!63;UBERON:0003056!4.15e-12!49;UBERON:0007811!1.84e-11!86;UBERON:0000956!2.95e-11!21;UBERON:0001869!2.95e-11!21;UBERON:0000203!2.95e-11!21;UBERON:0002619!8.24e-09!17
|ontology_enrichment_uberon_v019_2=UBERON:0003528,8.24e-27,29;UBERON:0002791,8.24e-27,29;UBERON:0001893,8.24e-27,29;UBERON:0002020,7.27e-26,34;UBERON:0000955,2.98e-22,47;UBERON:0006238,2.98e-22,47;UBERON:0002780,5.41e-22,39;UBERON:0001890,5.41e-22,39;UBERON:0006240,5.41e-22,39;UBERON:0003080,2.95e-21,40;UBERON:0000956,7.74e-21,21;UBERON:0001869,7.74e-21,21;UBERON:0000203,7.74e-21,21;UBERON:0002616,7.84e-21,46;UBERON:0001049,1.79e-20,52;UBERON:0005068,1.79e-20,52;UBERON:0006241,1.79e-20,52;UBERON:0007135,1.79e-20,52;UBERON:0000073,2.10e-19,54;UBERON:0003056,2.57e-17,49;UBERON:0001017,2.90e-17,73;UBERON:0001016,1.48e-16,75;UBERON:0002346,3.21e-16,64;UBERON:0003075,3.21e-16,64;UBERON:0007284,3.21e-16,64;UBERON:0002619,4.14e-15,17;UBERON:0010371,2.70e-14,73;UBERON:0004121,6.03e-13,95;UBERON:0000924,6.03e-13,95;UBERON:0006601,6.03e-13,95;UBERON:0002021,1.74e-10,10;UBERON:0000411,1.74e-10,10;UBERON:0001950,1.74e-10,10;UBERON:0010314,1.48e-09,92;UBERON:0000369,7.26e-09,5;UBERON:0002435,7.26e-09,5;UBERON:0000204,7.26e-09,5;UBERON:0010082,7.26e-09,5;UBERON:0002420,4.21e-07,8;UBERON:0007245,4.21e-07,8;UBERON:0010009,4.21e-07,8;UBERON:0010011,4.21e-07,8;UBERON:0000454,4.21e-07,8
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0.234064526321993,1.36974374580404,0.478632953972018,0.342401459862411,0.262261207256992,0,0,0,0.157731082679119,0.137114433605739,0,0.17008658030214,0.198581902401771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0.183546752161682,1.56478268869608,0.218025156380447,0.439372365468944,0.388859798148567,0.279972843250725,1.43752564364972,0.167782606057736,0.725362142011344,1.34437519656986,0.257259436035947,0.286533439938757,1.03134418455488,1.82084814773638,0.528990979272033,1.26766280701236,0.338844532069132,0,0,0,0,0.599200221036809,0,1.76272340924412,2.02508907497536,1.47227472945967,0.856952953211411,0.662605622854841,1.5923803897944,2.49198224647415,2.75765635983006,0,0.638436690425939,0.307213066512487,1.71452174049252,1.37231465403614,1.56274011167028,0.558365998002762,1.12552522006336,0.45839474333043,1.17851434189467,0.854230084794618,1.3047961207771,0.075726193333184,0.0755715601067855,0.579728977403356,0,0,0.539703191637817,0,0.448026887097336,0,0,0,0.70667914902068,0.14084341977668,0,0,0,0,0,0,0,0.258937883647172,0,0.346970653532272,0.304465478312141,0.230615497256059,0.301445281105245,0.587943535678524,0.251333182659351,0.494389935468748,0.722996784599558,0,0.485300549842228,0.441683036920787,0,0,0.292780797011547,1.25668024088073,0,0,0,0,0.898743836428936,1.83000241127451,5.6544458450789,1.73824320192276,0.511430914660661,1.45451631191692,1.62241263067758,0.712875546952214,0.248813941220186,0,0,0.260240885925407,0.229902104433473,0.540186389416048,0.150704817835715,0.680364991513279,1.0249097622788,0.655912071918102,0.776110112217047,0.215567992932842,1.13463648100692,1.75951124163949,0.43839146485515,0.834141747676794,1.39300866608867,0.823128545631774,0.59710280045548,0,0.257347907114715,0,0.207125772535502,0,0.180062061461015,0.473489471170421,0.393528463494808,0.308534225774757,0,0.536546802799238,0.350296027101508,0.329119699826961,0.164167464079095,0.162137619091711,0.292399974850665,0,0.134206418760372,1.05144974282064,2.36680608472354,0,0,0.639864751605702,0.696710015581316,0.515469845288373,1.00841762311671,0.667134131534611,0,0,0.164698954724011,0.251335208800269,0,0.38992817423824,0,0.432276099749388,0,0.189667900953082,0.342745537829186,0,0.407302655690628,0.193952487167626,0.350679099451593,0.505892296994058,0.295220295959204,0.470996183524124,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0.624075346229121,0,0.179397413521912,0,0,0.189491411770485,0.162964976442026,0.509235257325564,0.469380496577004,0.335012514883631,0,0.585400943573396,0,1.10732344824387,0,0.163863314715738,0.345369963731791,0.289298117163023,0,0,0,0,0.963303539926752,0.703270119553219,0.491804836130026,0,0.631016438832513,0.780877488593277,0.861693590931196,0,0,0.566153061577665,0,0.584511715822624,0,4.17717711348349,0.567760340833074,1.24645922567079,0.81443479676788,0.989820737835213,0,0.242780636154981,0.906970670894253,0.565815239267694,0.590603785761546,1.22974059177571,0.775284879504663,0.363533729477506,0,0,0,0,0,0.36012218806262,0.388076051348264,0.643011105094777,0.354680467284547,0,0.329098041204242,0.304464949114599,0,0.63549621259146,0.220528398054962,0.16488625294148,1.29171541356724,0.844380948994182,0.716234064018819,0.820704498725306,0.291480836629851,0.556275906031529,0.512612642393558,1.23832120777933,0,0,0.136694227721025,0.228778173206523,0,0.139951452323658,0,0,0.316335993581135,0,0.540026704109006,0.418176592028937,1.31017538247707,0.539457385539283,0.330613822901344,0,0,0,0,0,0.827292452285488,0,0.387479470433193,0.168956125490778,0.469428954583016,0.651021924219751,0.209718688851422,0,0.864090018773596,0.316011120628178,0.810900861160657,0.410843828659309,0.51968329191118,0.716106782669926,0.198681354781265,0.240390899039938,0.443068581523732,0.706765149637033,0.609654453239999,0.302478555410522,0.584747284438515,0.769694733122636,0.818138315270983,0.453460767230423,0.221985953374065,0.0897138566094757,0,0.579568782096571,0.375364950902364,0.36630324853453,0.643105137237198,0,1.6942555278512,1.84130094602871,2.86447756719698,2.23409137046794,0.685082519770642,1.5107877947794,2.70009000092722,1.80128481289688,1.35942722695261,0.51776031175182,0.207574695168353,0.399024873401031,1.36586884603307,0.972426868273176,1.67690530102386,0.367687016900028,0.888986911206461,0.618105171716683,1.28367683836726,1.01078884705519,0.760437899670719,0.188626341386076,1.03005658216871,0.704276676453562,0.689225627467359,1.42888107384922,0.927074607558844,0.964546102318525,0.824171801606613,0.294397840268795,0.342869252385415,0,0.238436189947321,1.30811774969096,0.941093804153306,0.846146078916765,0.548783918618318,0.526139422875686,0.271608227691724,2.24456908663095,0.474540072496697,0.788035859004508,0,1.23949472948773,0.964533054905707,1.99848462350357,1.40358965067245,1.28922632428979,0.956441660344217,0.882365676478062,0.231867835620421
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0.234064526321993,1.36974374580404,0.478632953972018,0.342401459862411,0.262261207256992,0,0,0,0.157731082679119,0.137114433605739,0,0.17008658030214,0.198581902401771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0.183546752161682,1.56478268869608,0.218025156380447,0.439372365468944,0.388859798148567,0.279972843250725,1.43752564364972,0.167782606057736,0.725362142011344,1.34437519656986,0.257259436035947,0.286533439938757,1.03134418455488,1.82084814773638,0.528990979272033,1.26766280701236,0.338844532069132,0,0,0,0,0.599200221036809,0,1.76272340924412,2.02508907497536,1.47227472945967,0.856952953211411,0.662605622854841,1.5923803897944,2.49198224647415,2.75765635983006,0,0.638436690425939,0.307213066512487,1.71452174049252,1.37231465403614,1.56274011167028,0.558365998002762,1.12552522006336,0.45839474333043,1.17851434189467,0.854230084794618,1.3047961207771,0.075726193333184,0.0755715601067855,0.579728977403356,0,0,0.539703191637817,0,0.448026887097336,0,0,0,0.70667914902068,0.14084341977668,0,0,0,0,0,0,0,0.258937883647172,0,0.346970653532272,0.304465478312141,0.230615497256059,0.301445281105245,0.587943535678524,0.251333182659351,0.494389935468748,0.722996784599558,0,0.485300549842228,0.441683036920787,0,0,0.292780797011547,1.25668024088073,0,0,0,0,0.898743836428936,1.83000241127451,5.6544458450789,1.73824320192276,0.511430914660661,1.45451631191692,1.62241263067758,0.712875546952214,0.248813941220186,0,0,0.260240885925407,0.229902104433473,0.540186389416048,0.150704817835715,0.680364991513279,1.0249097622788,0.655912071918102,0.776110112217047,0.215567992932842,1.13463648100692,1.75951124163949,0.43839146485515,0.834141747676794,1.39300866608867,0.823128545631774,0.59710280045548,0,0.257347907114715,0,0.207125772535502,0,0.180062061461015,0.473489471170421,0.393528463494808,0.308534225774757,0,0.536546802799238,0.350296027101508,0.329119699826961,0.164167464079095,0.162137619091711,0.292399974850665,0,0.134206418760372,1.05144974282064,2.36680608472354,0,0,0.639864751605702,0.696710015581316,0.515469845288373,1.00841762311671,0.667134131534611,0,0,0.164698954724011,0.251335208800269,0,0.38992817423824,0,0.432276099749388,0,0.189667900953082,0.342745537829186,0,0.407302655690628,0.193952487167626,0.350679099451593,0.505892296994058,0.295220295959204,0.470996183524124,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0.624075346229121,0,0.179397413521912,0,0,0.189491411770485,0.162964976442026,0.509235257325564,0.469380496577004,0.335012514883631,0,0.585400943573396,0,1.10732344824387,0,0.163863314715738,0.345369963731791,0.289298117163023,0,0,0,0,0.963303539926752,0.703270119553219,0.491804836130026,0,0.631016438832513,0.780877488593277,0.861693590931196,0,0,0.566153061577665,0,0.584511715822624,0,4.17717711348349,0.567760340833074,1.24645922567079,0.81443479676788,0.989820737835213,0,0.242780636154981,0.906970670894253,0.565815239267694,0.590603785761546,1.22974059177571,0.775284879504663,0.363533729477506,0,0,0,0,0,0.36012218806262,0.388076051348264,0.643011105094777,0.354680467284547,0,0.329098041204242,0.304464949114599,0,0.63549621259146,0.220528398054962,0.16488625294148,1.29171541356724,0.844380948994182,0.716234064018819,0.820704498725306,0.291480836629851,0.556275906031529,0.512612642393558,1.23832120777933,0,0,0.136694227721025,0.228778173206523,0,0.139951452323658,0,0,0.316335993581135,0,0.540026704109006,0.418176592028937,1.31017538247707,0.539457385539283,0.330613822901344,0,0,0,0,0,0.827292452285488,0,0.387479470433193,0.168956125490778,0.469428954583016,0.651021924219751,0.209718688851422,0,0.864090018773596,0.316011120628178,0.810900861160657,0.410843828659309,0.51968329191118,0.716106782669926,0.198681354781265,0.240390899039938,0.443068581523732,0.706765149637033,0.609654453239999,0.302478555410522,0.584747284438515,0.769694733122636,0.818138315270983,0.453460767230423,0.221985953374065,0.0897138566094757,0,0.579568782096571,0.375364950902364,0.36630324853453,0.643105137237198,0,1.6942555278512,1.84130094602871,2.86447756719698,2.23409137046794,0.685082519770642,1.5107877947794,2.70009000092722,1.80128481289688,1.35942722695261,0.51776031175182,0.207574695168353,0.399024873401031,1.36586884603307,0.972426868273176,1.67690530102386,0.367687016900028,0.888986911206461,0.618105171716683,1.28367683836726,1.01078884705519,0.760437899670719,0.188626341386076,1.03005658216871,0.704276676453562,0.689225627467359,1.42888107384922,0.927074607558844,0.964546102318525,0.824171801606613,0.294397840268795,0.342869252385415,0,0.238436189947321,1.30811774969096,0.941093804153306,0.846146078916765,0.548783918618318,0.526139422875686,0.271608227691724,2.24456908663095,0.474540072496697,0.788035859004508,0,1.23949472948773,0.964533054905707,1.99848462350357,1.40358965067245,1.28922632428979,0.956441660344217,0.882365676478062,0.231867835620421
|short_description=p13@Ldb1
}}
}}

Latest revision as of 20:52, 25 September 2015

Short description:p13@Ldb1
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_13_at_Ldb1_5end
Coexpression cluster:MCL_coexpression_mm9:2265
Association with transcript: -135bp_to_ENSMUST00000152946_5end
EntrezGene:Ldb1
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p13@Ldb1

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.80
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.13
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.14
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.23
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E61.37
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.48
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.34
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.26
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.16
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.14
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A30.17
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.20
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.20
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.18
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B71.56
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.22
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.44
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.39
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.28
Mouse Astrocytes, donor3.CNhs12107.11633-122C41.44
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.17
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.73
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A11.34
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.26
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.29
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C51.03
Mouse Granule cells, donor1.CNhs12131.11713-123C31.82
Mouse Granule cells, donor2.CNhs12357.11731-123E30.53
Mouse Granule cells, donor3.CNhs12108.11636-122C71.27
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.34
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.60
Mouse Microglia, donor2.CNhs12634.11736-123E80.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D51.76
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F52.03
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D91.47
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F10.86
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D50.66
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D21.59
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F22.49
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D62.76
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D30.00
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F30.64
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D70.31
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D41.71
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F41.37
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D81.56
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E40.56
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E51.13
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I60.46
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D61.18
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F60.85
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E11.30
Mouse Schwann, donor1.CNhs12507.11728-123D90.08
Mouse Schwann, donor2.CNhs12573.11746-123F90.08
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.58
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.54
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.45
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.71
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.14
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.00
accessory axillary lymph node, adult.CNhs10475.1063-29H90.26
adrenal gland, adult.CNhs10508.49-24D70.00
adrenal gland, embryo E14.CNhs11038.406-44C50.35
adrenal gland, embryo E16.CNhs11004.1254-43D60.30
adrenal gland, embryo E17.CNhs11043.1263-45I10.23
adrenal gland, embryo E18.CNhs11026.1262-18F50.30
adrenal gland, neonate N00.CNhs11191.1311-23C10.59
adrenal gland, neonate N25.CNhs11223.1377-27I30.25
amnion, adult pregnant day17.5.CNhs10488.583-22A80.49
aorta, adult.CNhs10498.46-23H10.72
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.49
bone (os femoris), neonate N16.CNhs11225.1525-43A60.44
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B20.29
cerebellum, neonate N30.CNhs11135.1395-42I21.26
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A40.90
corpus striatum, adult.CNhs10487.19-21D81.83
corpus striatum, neonate N00.CNhs11226.630-43F15.65
cortex, adult.CNhs10473.12-14D51.74
cortex, neonate N30.CNhs11107.1392-42F20.51
diencephalon, adult.CNhs10482.20-12F21.45
diencephalon, neonate N30.CNhs11201.1388-42B21.62
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.71
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.25
epididymis, adult.CNhs10490.58-23B20.00
eyeball, adult.CNhs10484.31-12G40.00
eyeball, embryo E12.CNhs11016.345-16C60.26
eyeball, embryo E14.CNhs10521.399-16E20.23
eyeball, embryo E15.CNhs10593.426-16C90.54
eyeball, embryo E17.CNhs11023.1261-18D40.15
eyeball, neonate N00.CNhs11207.633-15C60.68
eyeball, neonate N01.CNhs11140.1532-43E71.02
eyeball, neonate N02.CNhs11205.1551-44G80.66
eyeball, neonate N16.CNhs11188.777-19A20.78
forelimb, embryo E11.CNhs10596.335-25E20.22
forelimb, embryo E12.CNhs10600.359-14H21.13
forelimb, embryo E13.CNhs10589.384-1E21.76
forelimb, embryo E14.CNhs10577.413-26A80.44
forelimb, embryo E15.CNhs11007.437-20E70.83
forelimb, embryo E17.CNhs10598.1517-43C41.39
forelimb, embryo E18.CNhs11008.1520-43B50.82
gonad, embryo E13.CNhs11044.1564-45I60.60
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.26
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.21
heart, embryo E12.CNhs11015.353-12F50.00
heart, embryo E13.CNhs11013.376-3I90.18
heart, embryo E14.CNhs10597.403-26D40.47
heart, embryo E15.CNhs11017.431-16C80.39
heart, embryo E16.CNhs11021.457-17C60.31
heart, embryo E17.CNhs11025.479-18E50.00
heart, embryo E18.CNhs11030.1283-20G30.54
heart, neonate N00.CNhs11213.639-21E30.35
heart, neonate N03.CNhs11221.1349-25I20.33
heart, neonate N10.CNhs11118.749-24G10.16
heart, neonate N16.CNhs11209.782-15G10.16
heart, neonate N20.CNhs11127.821-26I60.29
heart, neonate N25.CNhs11196.1351-25D30.00
heart, neonate N30.CNhs11202.1390-42D20.13
hippocampus, adult.CNhs10478.13-16E81.05
hippocampus, neonate N00.CNhs11228.627-43G12.37
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.00
intestine, embryo E12.CNhs11019.1251-16I50.64
intestine, embryo E13.CNhs11010.381-16D50.70
intestine, embryo E15.CNhs10602.976-16D80.52
intestine, embryo E16.CNhs10585.463-22H41.01
intestine, embryo E17.CNhs10582.482-18D30.67
intestine, embryo E18.CNhs10526.1289-20F70.00
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.16
intestine, neonate N06.CNhs11102.688-20B80.25
intestine, neonate N07.CNhs11095.720-20F20.00
intestine, neonate N10.CNhs11098.755-23A50.39
intestine, neonate N20.CNhs11187.827-18D10.00
intestine, neonate N25.CNhs11121.1352-25E30.43
intestine, neonate N30.CNhs11131.1384-42G10.00
kidney, embryo E14.CNhs10606.411-4I90.19
kidney, embryo E15.CNhs10997.434-16F80.34
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I20.41
kidney, embryo E18.CNhs11001.1288-20C70.19
kidney, neonate N00.CNhs11214.646-21G70.35
kidney, neonate N10.CNhs11206.758-6D50.51
kidney, neonate N20.CNhs11113.832-19I10.30
kidney, neonate N25.CNhs11122.1353-25F30.47
kidney, neonate N30.CNhs11203.1385-42H10.00
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.00
liver, embryo E13.CNhs10524.378-3H60.00
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.00
liver, embryo E16.CNhs10523.462-17F50.00
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.37
liver, neonate N10.CNhs11115.751-24B90.62
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.18
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.00
lung, embryo E12.CNhs10522.354-16G20.19
lung, embryo E14.CNhs10604.404-26F80.16
lung, embryo E15.CNhs11020.432-17C50.51
lung, embryo E16.CNhs10998.458-17B60.47
lung, embryo E17.CNhs10605.480-44A60.34
lung, embryo E18.CNhs10583.1287-20I60.00
lung, neonate N00.CNhs11224.640-42C60.59
lung, neonate N06.CNhs11212.683-20E50.00
lung, neonate N07.CNhs11111.715-19A31.11
lung, neonate N10.CNhs11219.750-23E60.00
lung, neonate N20.CNhs11109.822-18A40.16
lung, neonate N25.CNhs11119.1359-25C70.35
lung, neonate N30.CNhs11133.1394-42H20.29
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C20.96
medulla oblongata, neonate N30.CNhs11200.1396-42A30.70
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.49
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.63
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.78
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.86
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.00
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.57
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.58
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.00
olfactory brain, adult.CNhs10489.18-22I94.18
ovary, adult.CNhs10507.91-2I70.57
ovary, embryo E18.CNhs11040.505-44H71.25
ovary, neonate N00.CNhs11217.1299-22I40.81
oviduct, adult pregnant day01.CNhs10500.988-6G60.99
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.24
pancreas, embryo E15.CNhs11042.1556-45F20.91
pancreas, embryo E16.CNhs11003.460-26E50.57
pancreas, embryo E17.CNhs10599.1558-45G30.59
pancreas, embryo E18.CNhs10580.1535-43I71.23
pancreas, neonate N00.CNhs11105.645-26G90.78
pancreas, neonate N01.CNhs11138.1531-43D70.36
pancreas, neonate N02.CNhs11139.1539-43D80.00
pancreas, neonate N16.CNhs11136.787-43B60.00
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G80.00
pituitary gland, embryo E12.CNhs11018.346-16E60.36
pituitary gland, embryo E13.CNhs11009.370-44C70.39
pituitary gland, embryo E14.CNhs11037.398-44A50.64
pituitary gland, embryo E15.CNhs10592.427-16B90.35
pituitary gland, embryo E16.CNhs11036.449-43F60.00
pituitary gland, embryo E17.CNhs11039.1265-44F50.33
pituitary gland, neonate N00.CNhs11190.1308-22E90.30
placenta, adult pregnant day10.CNhs10472.539-13I70.00
placenta, adult pregnant day17.CNhs10464.577-18G30.64
prostate, adult.CNhs10470.859-1F80.22
skin, adult.CNhs10492.30-1C30.16
skin, neonate N00.CNhs11124.650-25G41.29
skin, neonate N03.CNhs11215.662-22H30.84
skin, neonate N06.CNhs11097.693-20I50.72
skin, neonate N10.CNhs11108.762-6C40.82
small intestine, neonate N16.CNhs11114.790-21I10.29
spinal cord, adult.CNhs10505.24-13C90.56
spleen, adult.CNhs10465.25-2G20.51
spleen, embryo E16.CNhs11035.461-43C11.24
spleen, embryo E18.CNhs11011.1271-21F20.00
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.14
spleen, neonate N25.CNhs11099.1354-25G30.23
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.14
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E30.32
stomach, embryo E15.CNhs10603.1252-16G80.00
stomach, embryo E16.CNhs11022.459-17D40.54
stomach, embryo E17.CNhs11006.1035-18D50.42
stomach, embryo E18.CNhs10999.1286-20C61.31
stomach, neonate N03.CNhs11193.1340-24B80.54
stomach, neonate N07.CNhs11210.718-18A90.33
stomach, neonate N25.CNhs11104.1355-25E40.00
stomach, neonate N30.CNhs11134.1386-42I10.00
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.00
testis, embryo E15.CNhs11034.443-27C50.83
testis, embryo E16.CNhs11033.470-26G50.00
testis, embryo E17.CNhs11029.486-18I50.39
testis, embryo E18.CNhs11027.503-18G50.17
testis, neonate N00.CNhs11189.1300-22B70.47
testis, neonate N07.CNhs11222.726-26I40.65
testis, neonate N10.CNhs11204.763-44D90.21
testis, neonate N20.CNhs11110.839-18H30.00
testis, neonate N30.CNhs11130.1391-42E20.86
thymus, adult.CNhs10471.38-12B50.32
thymus, embryo E14.CNhs11041.402-44I40.81
thymus, embryo E15.CNhs11005.430-45I20.41
thymus, embryo E16.CNhs11002.456-26C50.52
thymus, embryo E17.CNhs10581.478-18C10.72
thymus, embryo E18.CNhs10595.1273-19G40.20
thymus, neonate N02.CNhs11181.1541-43F80.24
thymus, neonate N03.CNhs11137.2104-43C70.44
thymus, neonate N06.CNhs11197.681-26C40.71
thymus, neonate N07.CNhs11211.713-19D30.61
thymus, neonate N10.CNhs11194.748-24E40.30
thymus, neonate N20.CNhs11186.820-7A20.58
thymus, neonate N25.CNhs11125.1362-25G70.77
thymus, neonate N30.CNhs11132.1393-42G20.82
tongue, adult.CNhs10499.32-1B40.45
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.22
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.09
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E40.58
uterus, adult pregnant day19.CNhs10497.590-15F50.38
uterus, adult.CNhs10509.92-27E50.37
vagina, adult.CNhs10502.89-27D50.64
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A11.69
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A21.84
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A32.86
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D72.23
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A40.69
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A51.51
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A62.70
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A71.80
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A81.36
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A90.52
whole body, embryo E11.CNhs11014.324-5I80.21
whole body, embryo E12.CNhs10587.857-27C90.40
whole body, embryo E13.CNhs10512.372-23H21.37
whole body, embryo E14.5.CNhs10578.420-27D20.97
whole body, embryo E14.CNhs10519.395-14B11.68
whole body, embryo E16.CNhs10514.453-14F20.37
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G50.89
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G50.62
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G51.28
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G51.01
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G50.76
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G50.19
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G51.03
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G50.70
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G50.69
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G51.43
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G50.93
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G50.96
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.82
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G50.29
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G50.34
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G50.24
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G51.31
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G50.94
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G50.85
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G50.55
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G50.53
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G50.27
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G52.24
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G50.47
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G50.79
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G51.24
whole body, embryo E17.5.CNhs10513.490-9F90.96
whole body, embryo E17.CNhs10517.475-3I52.00
whole body, embryo E18.CNhs10516.493-3B31.40
whole body, neonate N00.CNhs10525.657-19C21.29
whole body, neonate N01.CNhs10576.659-23C60.96
whole body, neonate N06.CNhs10515.692-21D10.88
whole body, neonate N10.CNhs10518.761-6B40.23





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)6.12e-1123
neuroblast (sensu Vertebrata)6.12e-1123
neuron of cerebral cortex1.06e-106

Uber anatomy
Ontology termp-valuen
brain grey matter8.24e-2729
regional part of telencephalon8.24e-2729
telencephalon8.24e-2729
gray matter7.27e-2634
brain2.98e-2247
future brain2.98e-2247
regional part of forebrain5.41e-2239
forebrain5.41e-2239
future forebrain5.41e-2239
anterior neural tube2.95e-2140
cerebral cortex7.74e-2121
cerebral hemisphere7.74e-2121
pallium7.74e-2121
regional part of brain7.84e-2146
neural tube1.79e-2052
neural rod1.79e-2052
future spinal cord1.79e-2052
neural keel1.79e-2052
regional part of nervous system2.10e-1954
pre-chordal neural plate2.57e-1749
central nervous system2.90e-1773
nervous system1.48e-1675
neurectoderm3.21e-1664
neural plate3.21e-1664
presumptive neural plate3.21e-1664
regional part of cerebral cortex4.14e-1517
ecto-epithelium2.70e-1473
ectoderm-derived structure6.03e-1395
ectoderm6.03e-1395
presumptive ectoderm6.03e-1395
occipital lobe1.74e-1010
visual cortex1.74e-1010
neocortex1.74e-1010
structure with developmental contribution from neural crest1.48e-0992
corpus striatum7.26e-095
striatum7.26e-095
ventral part of telencephalon7.26e-095
future corpus striatum7.26e-095
basal ganglion4.21e-078
nuclear complex of neuraxis4.21e-078
aggregate regional part of brain4.21e-078
collection of basal ganglia4.21e-078
cerebral subcortex4.21e-078
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