FFCP PHASE1:Mm9::chr5:23929310..23929319,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=12568 | |EntrezGene=12568 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=464 | |||
|TSSclassifier=NA | |||
|UniProt=P49615,Q543F6 | |UniProt=P49615,Q543F6 | ||
|association_with_transcript=28bp_to_ENSMUST00000030814,NM_007668,uc008wrl.1_5end | |association_with_transcript=28bp_to_ENSMUST00000030814,NM_007668,uc008wrl.1_5end | ||
|cluster_id=chr5:23929310..23929319,- | |||
|description=CAGE_peak_3_at_Cdk5_5end | |description=CAGE_peak_3_at_Cdk5_5end | ||
|id=chr5:23929310..23929319,- | |id=chr5:23929310..23929319,- | ||
|ontology_enrichment_celltype=CL:0000117!1.43e-10!23;CL:0000337!1.43e-10!23;CL:0002319!1.50e-09!43;CL:0000221!2.07e-09!44;CL:0000133!2.07e-09!44;CL:0000540!8.04e-09!33;CL:0000047!8.04e-09!33;CL:0000031!8.04e-09!33;CL:0000404!8.04e-09!33;CL:0000055!1.46e-08!50;CL:0000393!3.41e-08!39;CL:0000211!3.41e-08!39 | |ontology_enrichment_celltype=CL:0000117!1.43e-10!23;CL:0000337!1.43e-10!23;CL:0002319!1.50e-09!43;CL:0000221!2.07e-09!44;CL:0000133!2.07e-09!44;CL:0000540!8.04e-09!33;CL:0000047!8.04e-09!33;CL:0000031!8.04e-09!33;CL:0000404!8.04e-09!33;CL:0000055!1.46e-08!50;CL:0000393!3.41e-08!39;CL:0000211!3.41e-08!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.75e-21,23;CL:0000337,8.75e-21,23;CL:0000540,2.00e-13,33;CL:0000047,2.00e-13,33;CL:0000031,2.00e-13,33;CL:0000404,2.00e-13,33;CL:0002319,5.59e-11,43;CL:0000393,7.83e-11,39;CL:0000211,7.83e-11,39;CL:0000221,1.20e-10,44;CL:0000133,1.20e-10,44;CL:0002610,1.44e-08,3;CL:0002612,3.18e-08,3;CL:0002614,1.39e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.25e-19!73;UBERON:0005743!8.25e-19!73;UBERON:0000073!1.13e-18!75;UBERON:0001016!1.13e-18!75;UBERON:0001049!2.42e-17!52;UBERON:0005068!2.42e-17!52;UBERON:0006241!2.42e-17!52;UBERON:0007135!2.42e-17!52;UBERON:0002346!3.17e-16!71;UBERON:0003075!3.17e-16!71;UBERON:0007284!3.17e-16!71;UBERON:0002616!2.55e-15!49;UBERON:0000033!6.99e-15!63;UBERON:0000955!1.40e-14!50;UBERON:0006238!1.40e-14!50;UBERON:0004121!2.70e-14!102;UBERON:0000924!2.70e-14!102;UBERON:0006601!2.70e-14!102;UBERON:0003056!6.88e-12!49;UBERON:0003080!1.62e-10!40;UBERON:0002020!3.12e-10!34;UBERON:0002780!6.11e-10!39;UBERON:0001890!6.11e-10!39;UBERON:0006240!6.11e-10!39;UBERON:0003076!2.27e-08!12;UBERON:0003057!2.27e-08!12;UBERON:0000153!3.45e-08!94;UBERON:0002791!2.96e-07!29;UBERON:0003528!2.96e-07!29;UBERON:0001893!2.96e-07!29;UBERON:0007811!6.86e-07!86;UBERON:0000991!7.65e-07!18;UBERON:0005564!7.65e-07!18 | |ontology_enrichment_uberon=UBERON:0001017!8.25e-19!73;UBERON:0005743!8.25e-19!73;UBERON:0000073!1.13e-18!75;UBERON:0001016!1.13e-18!75;UBERON:0001049!2.42e-17!52;UBERON:0005068!2.42e-17!52;UBERON:0006241!2.42e-17!52;UBERON:0007135!2.42e-17!52;UBERON:0002346!3.17e-16!71;UBERON:0003075!3.17e-16!71;UBERON:0007284!3.17e-16!71;UBERON:0002616!2.55e-15!49;UBERON:0000033!6.99e-15!63;UBERON:0000955!1.40e-14!50;UBERON:0006238!1.40e-14!50;UBERON:0004121!2.70e-14!102;UBERON:0000924!2.70e-14!102;UBERON:0006601!2.70e-14!102;UBERON:0003056!6.88e-12!49;UBERON:0003080!1.62e-10!40;UBERON:0002020!3.12e-10!34;UBERON:0002780!6.11e-10!39;UBERON:0001890!6.11e-10!39;UBERON:0006240!6.11e-10!39;UBERON:0003076!2.27e-08!12;UBERON:0003057!2.27e-08!12;UBERON:0000153!3.45e-08!94;UBERON:0002791!2.96e-07!29;UBERON:0003528!2.96e-07!29;UBERON:0001893!2.96e-07!29;UBERON:0007811!6.86e-07!86;UBERON:0000991!7.65e-07!18;UBERON:0005564!7.65e-07!18 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.84e-21,54;UBERON:0003076,9.93e-20,12;UBERON:0003057,9.93e-20,12;UBERON:0001017,1.19e-18,73;UBERON:0001016,5.45e-18,75;UBERON:0001049,9.68e-18,52;UBERON:0005068,9.68e-18,52;UBERON:0006241,9.68e-18,52;UBERON:0007135,9.68e-18,52;UBERON:0002240,2.55e-15,6;UBERON:0005174,2.55e-15,6;UBERON:0001137,2.55e-15,6;UBERON:0002346,1.92e-13,64;UBERON:0003075,1.92e-13,64;UBERON:0007284,1.92e-13,64;UBERON:0001948,5.02e-13,5;UBERON:0002315,5.02e-13,5;UBERON:0004121,6.73e-13,95;UBERON:0000924,6.73e-13,95;UBERON:0006601,6.73e-13,95;UBERON:0010371,3.71e-11,73;UBERON:0002020,1.25e-10,34;UBERON:0002950,9.85e-10,4;UBERON:0001891,9.85e-10,4;UBERON:0009616,9.85e-10,4;UBERON:0010286,9.85e-10,4;UBERON:0002616,1.20e-09,46;UBERON:0000955,2.29e-09,47;UBERON:0006238,2.29e-09,47;UBERON:0004684,1.44e-08,3;UBERON:0002275,1.44e-08,3;UBERON:0002257,3.18e-08,3;UBERON:0010314,8.05e-08,92;UBERON:0002038,1.39e-07,3;UBERON:0009663,1.39e-07,3;UBERON:0009661,1.39e-07,3;UBERON:0000125,1.39e-07,3;UBERON:0002308,1.39e-07,3;UBERON:0004733,7.19e-07,6;UBERON:0004732,7.19e-07,6;UBERON:0002028,7.19e-07,6;UBERON:0007277,7.19e-07,6;UBERON:0002420,7.87e-07,8;UBERON:0007245,7.87e-07,8;UBERON:0010009,7.87e-07,8;UBERON:0010011,7.87e-07,8;UBERON:0000454,7.87e-07,8 | |||
|phase1_expression=0.480446541314382,0.348975407639361,0,0,0,0,0,0.129123323441576,0,0,0,0,0,0.0874204024189974,0,0,0,0.157731082679119,0,0,0.680346321208558,0,0.783599367416806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881277725829041,0.202753862439029,0.367093504323363,0.782391344348039,0.218025156380447,0.439372365468944,1.55543919259427,0.279972843250725,0,0,0,0,0.257259436035947,0,0,1.41621522601718,1.5869729378161,0.633831403506179,0.338844532069132,0,0,0,0,0.299600110518405,0.384218305321555,0.103689612308478,0.135005938331691,0,2.85650984403804,4.41737081903227,0.367472397644862,0.479227355091182,0.919218786610021,2.20231761998777,3.19218345212969,3.68655679814984,1.05509030184155,1.28082701043374,0.52091337055676,4.74611098302348,1.12552522006336,1.22238598221448,3.24091444021034,3.41692033917847,1.3047961207771,0.227178579999552,0.151143120213571,0.289864488701678,0,0,0,0,0,0.280888840263504,0.511290967734173,0.259786004602869,0.35333957451034,0.14084341977668,0,0,0,0,0,0,0,0,0.148442139064825,0.346970653532272,0,0,0,0.117588707135705,0.251333182659351,0,0,0,0,0,0,0,1.17112318804619,1.46612694769419,0,0.11981512450592,0,0,1.79748767285787,0.915001205637253,0.251308704225729,0.869121600961382,1.27857728665165,2.70124457927428,3.73154905055843,0.305518091550949,0.124406970610093,0.252722758433675,0.210441855886474,0.130120442962704,0.919608417733892,0.360124259610698,0.452114453507145,0.408218994907967,0.384341160854549,0.374806898238915,0.258703370739016,0.431135985865684,0.945530400839096,0.351902248327898,0.43839146485515,0.834141747676794,0.696504333044333,0.205782136407943,1.79130840136644,0,0,0,0.207125772535502,0.234526059981096,0,0,0.196764231747404,0,0,0,0.116765342367169,0.16455984991348,0,0,0,0,0,0.630869845692382,0.720332286654991,0,0,0.639864751605702,0.464473343720877,0.38660238396628,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0,0,0,0,0,0,0.379335801906163,0.342745537829186,0,0.203651327845314,0.193952487167626,0.140271639780637,0.0632365371242573,0,0.156998727841375,0.123397163921801,0,0,0,0.224862112384854,0,0.241177159752417,0,0,0,0,0,0,0.312037673114561,0,0.358794827043824,0,0,0.37898282354097,0.488894929326078,0.339490171550376,0.234690248288502,0,0.238043640886014,0.195133647857799,0,0,0.159454768657487,0,0,0,0,0,0,0.275936746304732,3.85321415970701,6.56385444916338,0.163934945376675,0,0.315508219416257,0.390438744296638,0,0,0.222798674082394,0,0.809621403349789,0.876767573733936,0,0,0.425820255624806,0.534196811001766,0.325773918707152,0.164970122972535,0,0,0.302323556964751,0.188605079755898,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0.680879211507576,0.36012218806262,0.517434735131018,0.214337035031592,0.532020700926821,0.356737635204141,0.329098041204242,0.304464949114599,0.469343416127421,0.42366414172764,0,0,0,0.0603129249281559,0,0,0,2.78137953015765,0.170870880797853,0,0.370389054739423,0,0,0,0,0,0,0,0.316335993581135,0,0.324016022465404,0,0,0,0,0,0.129614973291793,0,2.25477175473676,0.448549638131936,0.992750942742586,0.972255941720238,0.387479470433193,1.35164900392623,1.76035857968631,1.69265700297135,1.78260885523708,0.724752362478018,2.01621004380506,0,0.405450430580328,0,0.129920822977795,0,0,0,0,0.100966449948148,0.0762068066549998,0,0,0,0.116876902181569,0,0.221985953374065,0.0897138566094757,0.167884616364078,0.19318959403219,0.563047426353546,0,0,0,1.12950368523413,0.920650473014354,0.572895513439397,0.515559547031063,1.37016503954128,0,1.35004500046361,0,0.453142408984205,0,0.103787347584177,2.39414924040619,0.170733605754134,0.486213434136588,0.209613162627982,0.183843508450014,0.666740183404846,0,0.320919209591815,0.252697211763798,0.50695859978048,0.565879024158229,0.37456602987953,0.256100609619477,0.17230640686684,0.476293691283074,0.231768651889711,0,0,0.147198920134397,0.685738504770831,0.177475806159338,0.715308569841963,0.436039249896986,0.658765662907314,0.423073039458382,0.73171189149109,0.263069711437843,0.271608227691724,1.12228454331548,0.118635018124174,0.492522411877817,1.22769312950907,0.309873682371932,0,0.749431733813838,0.467863216890817,0.429742108096597,0,0,0.463735671240843 | |phase1_expression=0.480446541314382,0.348975407639361,0,0,0,0,0,0.129123323441576,0,0,0,0,0,0.0874204024189974,0,0,0,0.157731082679119,0,0,0.680346321208558,0,0.783599367416806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881277725829041,0.202753862439029,0.367093504323363,0.782391344348039,0.218025156380447,0.439372365468944,1.55543919259427,0.279972843250725,0,0,0,0,0.257259436035947,0,0,1.41621522601718,1.5869729378161,0.633831403506179,0.338844532069132,0,0,0,0,0.299600110518405,0.384218305321555,0.103689612308478,0.135005938331691,0,2.85650984403804,4.41737081903227,0.367472397644862,0.479227355091182,0.919218786610021,2.20231761998777,3.19218345212969,3.68655679814984,1.05509030184155,1.28082701043374,0.52091337055676,4.74611098302348,1.12552522006336,1.22238598221448,3.24091444021034,3.41692033917847,1.3047961207771,0.227178579999552,0.151143120213571,0.289864488701678,0,0,0,0,0,0.280888840263504,0.511290967734173,0.259786004602869,0.35333957451034,0.14084341977668,0,0,0,0,0,0,0,0,0.148442139064825,0.346970653532272,0,0,0,0.117588707135705,0.251333182659351,0,0,0,0,0,0,0,1.17112318804619,1.46612694769419,0,0.11981512450592,0,0,1.79748767285787,0.915001205637253,0.251308704225729,0.869121600961382,1.27857728665165,2.70124457927428,3.73154905055843,0.305518091550949,0.124406970610093,0.252722758433675,0.210441855886474,0.130120442962704,0.919608417733892,0.360124259610698,0.452114453507145,0.408218994907967,0.384341160854549,0.374806898238915,0.258703370739016,0.431135985865684,0.945530400839096,0.351902248327898,0.43839146485515,0.834141747676794,0.696504333044333,0.205782136407943,1.79130840136644,0,0,0,0.207125772535502,0.234526059981096,0,0,0.196764231747404,0,0,0,0.116765342367169,0.16455984991348,0,0,0,0,0,0.630869845692382,0.720332286654991,0,0,0.639864751605702,0.464473343720877,0.38660238396628,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0,0,0,0,0,0,0.379335801906163,0.342745537829186,0,0.203651327845314,0.193952487167626,0.140271639780637,0.0632365371242573,0,0.156998727841375,0.123397163921801,0,0,0,0.224862112384854,0,0.241177159752417,0,0,0,0,0,0,0.312037673114561,0,0.358794827043824,0,0,0.37898282354097,0.488894929326078,0.339490171550376,0.234690248288502,0,0.238043640886014,0.195133647857799,0,0,0.159454768657487,0,0,0,0,0,0,0.275936746304732,3.85321415970701,6.56385444916338,0.163934945376675,0,0.315508219416257,0.390438744296638,0,0,0.222798674082394,0,0.809621403349789,0.876767573733936,0,0,0.425820255624806,0.534196811001766,0.325773918707152,0.164970122972535,0,0,0.302323556964751,0.188605079755898,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0.680879211507576,0.36012218806262,0.517434735131018,0.214337035031592,0.532020700926821,0.356737635204141,0.329098041204242,0.304464949114599,0.469343416127421,0.42366414172764,0,0,0,0.0603129249281559,0,0,0,2.78137953015765,0.170870880797853,0,0.370389054739423,0,0,0,0,0,0,0,0.316335993581135,0,0.324016022465404,0,0,0,0,0,0.129614973291793,0,2.25477175473676,0.448549638131936,0.992750942742586,0.972255941720238,0.387479470433193,1.35164900392623,1.76035857968631,1.69265700297135,1.78260885523708,0.724752362478018,2.01621004380506,0,0.405450430580328,0,0.129920822977795,0,0,0,0,0.100966449948148,0.0762068066549998,0,0,0,0.116876902181569,0,0.221985953374065,0.0897138566094757,0.167884616364078,0.19318959403219,0.563047426353546,0,0,0,1.12950368523413,0.920650473014354,0.572895513439397,0.515559547031063,1.37016503954128,0,1.35004500046361,0,0.453142408984205,0,0.103787347584177,2.39414924040619,0.170733605754134,0.486213434136588,0.209613162627982,0.183843508450014,0.666740183404846,0,0.320919209591815,0.252697211763798,0.50695859978048,0.565879024158229,0.37456602987953,0.256100609619477,0.17230640686684,0.476293691283074,0.231768651889711,0,0,0.147198920134397,0.685738504770831,0.177475806159338,0.715308569841963,0.436039249896986,0.658765662907314,0.423073039458382,0.73171189149109,0.263069711437843,0.271608227691724,1.12228454331548,0.118635018124174,0.492522411877817,1.22769312950907,0.309873682371932,0,0.749431733813838,0.467863216890817,0.429742108096597,0,0,0.463735671240843 | ||
|short_description=p3@Cdk5 | |short_description=p3@Cdk5 | ||
}} | }} |
Latest revision as of 20:34, 25 September 2015
Short description: | p3@Cdk5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Cdk5_5end |
Coexpression cluster: | MCL_coexpression_mm9:464 |
Association with transcript: | 28bp_to_ENSMUST00000030814, NM_007668, uc008wrl.1_5end |
EntrezGene: | Cdk5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.75e-21 | 23 |
neuroblast (sensu Vertebrata) | 8.75e-21 | 23 |
neuron | 2.00e-13 | 33 |
neuronal stem cell | 2.00e-13 | 33 |
neuroblast | 2.00e-13 | 33 |
electrically signaling cell | 2.00e-13 | 33 |
neural cell | 5.59e-11 | 43 |
electrically responsive cell | 7.83e-11 | 39 |
electrically active cell | 7.83e-11 | 39 |
ectodermal cell | 1.20e-10 | 44 |
neurectodermal cell | 1.20e-10 | 44 |
raphe nuclei neuron | 1.44e-08 | 3 |
neuron of the ventral spinal cord | 3.18e-08 | 3 |
neuron of the substantia nigra | 1.39e-07 | 3 |