FFCP PHASE1:Mm9::chr8:73279849..73279867,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=19339|HGNC=|MCL_coexpression_id=313|UniProt=|association_with_transcript=-488bp_to_ENSMUST00000130468_5end|description=CAGE_peak_4_at_Rab3a_5end|id=chr8:73279849..73279867,+|ontology_enrichment_celltype=CL:0000117!1.11e-17!23;CL:0000337!1.11e-17!23;CL:0000540!1.32e-09!33;CL:0000047!1.32e-09!33;CL:0000031!1.32e-09!33;CL:0000404!1.32e-09!33;CL:0002319!2.96e-08!43;CL:0000393!3.21e-08!39;CL:0000211!3.21e-08!39;CL:0000221!7.24e-08!44;CL:0000133!7.24e-08!44;CL:0000055!5.49e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.30e-24,23;CL:0000337,1.30e-24,23;CL:0000540,3.84e-16,33;CL:0000047,3.84e-16,33;CL:0000031,3.84e-16,33;CL:0000404,3.84e-16,33;CL:0000393,3.77e-13,39;CL:0000211,3.77e-13,39;CL:0002319,1.27e-11,43;CL:0000221,2.78e-11,44;CL:0000133,2.78e-11,44;CL:0002614,3.40e-10,3;CL:0002610,1.77e-09,3;CL:0002612,9.18e-09,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.50e-29!52;UBERON:0005068!2.50e-29!52;UBERON:0006241!2.50e-29!52;UBERON:0007135!2.50e-29!52;UBERON:0000955!1.22e-27!50;UBERON:0006238!1.22e-27!50;UBERON:0002346!5.87e-27!71;UBERON:0003075!5.87e-27!71;UBERON:0007284!5.87e-27!71;UBERON:0002616!8.97e-27!49;UBERON:0002020!5.63e-26!34;UBERON:0001017!2.59e-25!73;UBERON:0005743!2.59e-25!73;UBERON:0000033!1.91e-24!63;UBERON:0000073!4.59e-24!75;UBERON:0001016!4.59e-24!75;UBERON:0004121!7.35e-22!102;UBERON:0000924!7.35e-22!102;UBERON:0006601!7.35e-22!102;UBERON:0002791!2.03e-21!29;UBERON:0003528!2.03e-21!29;UBERON:0001893!2.03e-21!29;UBERON:0003080!3.61e-21!40;UBERON:0003056!5.92e-21!49;UBERON:0002780!1.70e-20!39;UBERON:0001890!1.70e-20!39;UBERON:0006240!1.70e-20!39;UBERON:0000956!8.39e-15!21;UBERON:0001869!8.39e-15!21;UBERON:0000203!8.39e-15!21;UBERON:0007811!2.85e-14!86;UBERON:0000153!3.79e-12!94;UBERON:0002619!7.98e-12!17;UBERON:0002021!2.90e-10!10;UBERON:0000411!2.90e-10!10;UBERON:0001950!2.90e-10!10;UBERON:0003076!1.47e-08!12;UBERON:0003057!1.47e-08!12;UBERON:0000025!2.28e-08!114;UBERON:0002420!8.27e-08!8;UBERON:0007245!8.27e-08!8;UBERON:0010009!8.27e-08!8;UBERON:0010011!8.27e-08!8;UBERON:0000454!8.27e-08!8;UBERON:0004111!3.47e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.23e-41,54;UBERON:0002020,4.84e-39,34;UBERON:0001049,1.33e-36,52;UBERON:0005068,1.33e-36,52;UBERON:0006241,1.33e-36,52;UBERON:0007135,1.33e-36,52;UBERON:0001017,1.29e-33,73;UBERON:0001016,1.46e-32,75;UBERON:0002346,1.09e-28,64;UBERON:0003075,1.09e-28,64;UBERON:0007284,1.09e-28,64;UBERON:0003528,1.04e-27,29;UBERON:0002791,1.04e-27,29;UBERON:0001893,1.04e-27,29;UBERON:0002021,8.04e-27,10;UBERON:0000411,8.04e-27,10;UBERON:0001950,8.04e-27,10;UBERON:0000955,1.48e-26,47;UBERON:0006238,1.48e-26,47;UBERON:0002616,9.10e-25,46;UBERON:0004121,1.82e-24,95;UBERON:0000924,1.82e-24,95;UBERON:0006601,1.82e-24,95;UBERON:0010371,1.87e-24,73;UBERON:0002780,5.46e-22,39;UBERON:0001890,5.46e-22,39;UBERON:0006240,5.46e-22,39;UBERON:0003080,2.48e-21,40;UBERON:0000956,1.18e-19,21;UBERON:0001869,1.18e-19,21;UBERON:0000203,1.18e-19,21;UBERON:0010314,3.15e-18,92;UBERON:0003076,9.35e-17,12;UBERON:0003057,9.35e-17,12;UBERON:0003056,1.24e-16,49;UBERON:0002240,6.61e-16,6;UBERON:0005174,6.61e-16,6;UBERON:0001137,6.61e-16,6;UBERON:0002619,5.67e-15,17;UBERON:0001948,1.04e-13,5;UBERON:0002315,1.04e-13,5;UBERON:0000025,1.34e-13,114;UBERON:0004111,2.50e-12,122;UBERON:0002038,3.40e-10,3;UBERON:0009663,3.40e-10,3;UBERON:0009661,3.40e-10,3;UBERON:0000125,3.40e-10,3;UBERON:0002308,3.40e-10,3;UBERON:0004684,1.77e-09,3;UBERON:0002275,1.77e-09,3;UBERON:0002420,4.56e-09,8;UBERON:0007245,4.56e-09,8;UBERON:0010009,4.56e-09,8;UBERON:0010011,4.56e-09,8;UBERON:0000454,4.56e-09,8;UBERON:0011216,7.35e-09,194;UBERON:0002257,9.18e-09,3;UBERON:0002950,1.00e-07,4;UBERON:0001891,1.00e-07,4;UBERON:0009616,1.00e-07,4;UBERON:0010286,1.00e-07,4;UBERON:0000483,6.71e-07,174;UBERON:0000119,9.37e-07,176|phase1_expression=0,0,0,0,0,0,0,0,0.281577444303333,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0.319984845586813,0,0,0,0,0,0,0,0,0.61506478758457,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0.218025156380447,0,0.388859798148567,0.139986421625363,0,0,0,0,0.257259436035947,0,0,0.809265843438391,0.528990979272033,0,0,0,0,0.988866362566974,0.7104801149461,0.599200221036809,0,1.14058573539325,2.8351247049655,0.841299845405528,3.14216082844184,3.75476519617743,0.367472397644862,0.958454710182364,0.919218786610021,4.40463523997555,3.19218345212969,5.22262213071228,0.923204014111357,2.28719109006024,2.08365348222704,9.21303896704557,5.6276261003168,5.65353516774197,3.53554302568401,3.84403538157578,1.3047961207771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0.29688427812965,0,0.608930956624282,0,0.60289056221049,0,0.251333182659351,0,0,0,0.161766849947409,0.220841518460394,0,0,0.878342391034642,4.60782754989601,0.255457055208591,0,0,0,0.748953197024114,0.457500602818626,0.879580464790051,1.21677024134594,1.27857728665165,2.70124457927428,0.486723789203273,0,0,0.505445516867349,0,0,0,0.360124259610698,0.150704817835715,0.136072998302656,0.384341160854549,0.0937017245597288,0.776110112217047,0,0.189106080167819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0,0.0810688095458557,0.292399974850665,0.219550115291051,0,0.630869845692382,0.102904612379284,0,0,0.213288250535234,0.232236671860439,0,0.403367049246685,0,0,0,0,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0.140271639780637,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0.275936746304732,1.44495530989013,1.17211686592203,0,0.252470927204373,0,0,0,0,0,0,0,0,0,1.60660658210904,0,0,0,0.164970122972535,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0,0.258717367565509,0,0.354680467284547,0,0.164549020602121,0.608929898229199,0,0,0,0.16488625294148,0,0,0,0,0,1.48340241608408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149516546043979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,4.51801474093653,5.52390283808612,4.01026859407578,2.749650917499,4.7955776383945,4.5323633843382,1.35004500046361,4.05289082901798,1.81256963593682,2.5888015587591,0.103787347584177,0,0.170733605754134,0,0.209613162627982,0,0,0.412070114477788,0.64183841918363,0.505394423527595,0.25347929989024,0,0.468207537349412,0.0640251524048693,0.287177344778066,0.952587382566147,0.231768651889711,0.192909220463705,0.824171801606613,0.294397840268795,0,0,0.238436189947321,0.581385666529314,0.188218760830661,0.169229215783353,0.365855945745545,0.526139422875686,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0.154936841185966,0,0,0.467863216890817,0,0.191288332068843,0,0.231867835620421|short_description=p4@Rab3a}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19339 | |||
|HGNC= | |||
|MCL_coexpression_id=313 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-488bp_to_ENSMUST00000130468_5end | |||
|cluster_id=chr8:73279849..73279867,+ | |||
|description=CAGE_peak_4_at_Rab3a_5end | |||
|id=chr8:73279849..73279867,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.11e-17!23;CL:0000337!1.11e-17!23;CL:0000540!1.32e-09!33;CL:0000047!1.32e-09!33;CL:0000031!1.32e-09!33;CL:0000404!1.32e-09!33;CL:0002319!2.96e-08!43;CL:0000393!3.21e-08!39;CL:0000211!3.21e-08!39;CL:0000221!7.24e-08!44;CL:0000133!7.24e-08!44;CL:0000055!5.49e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.30e-24,23;CL:0000337,1.30e-24,23;CL:0000540,3.84e-16,33;CL:0000047,3.84e-16,33;CL:0000031,3.84e-16,33;CL:0000404,3.84e-16,33;CL:0000393,3.77e-13,39;CL:0000211,3.77e-13,39;CL:0002319,1.27e-11,43;CL:0000221,2.78e-11,44;CL:0000133,2.78e-11,44;CL:0002614,3.40e-10,3;CL:0002610,1.77e-09,3;CL:0002612,9.18e-09,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.50e-29!52;UBERON:0005068!2.50e-29!52;UBERON:0006241!2.50e-29!52;UBERON:0007135!2.50e-29!52;UBERON:0000955!1.22e-27!50;UBERON:0006238!1.22e-27!50;UBERON:0002346!5.87e-27!71;UBERON:0003075!5.87e-27!71;UBERON:0007284!5.87e-27!71;UBERON:0002616!8.97e-27!49;UBERON:0002020!5.63e-26!34;UBERON:0001017!2.59e-25!73;UBERON:0005743!2.59e-25!73;UBERON:0000033!1.91e-24!63;UBERON:0000073!4.59e-24!75;UBERON:0001016!4.59e-24!75;UBERON:0004121!7.35e-22!102;UBERON:0000924!7.35e-22!102;UBERON:0006601!7.35e-22!102;UBERON:0002791!2.03e-21!29;UBERON:0003528!2.03e-21!29;UBERON:0001893!2.03e-21!29;UBERON:0003080!3.61e-21!40;UBERON:0003056!5.92e-21!49;UBERON:0002780!1.70e-20!39;UBERON:0001890!1.70e-20!39;UBERON:0006240!1.70e-20!39;UBERON:0000956!8.39e-15!21;UBERON:0001869!8.39e-15!21;UBERON:0000203!8.39e-15!21;UBERON:0007811!2.85e-14!86;UBERON:0000153!3.79e-12!94;UBERON:0002619!7.98e-12!17;UBERON:0002021!2.90e-10!10;UBERON:0000411!2.90e-10!10;UBERON:0001950!2.90e-10!10;UBERON:0003076!1.47e-08!12;UBERON:0003057!1.47e-08!12;UBERON:0000025!2.28e-08!114;UBERON:0002420!8.27e-08!8;UBERON:0007245!8.27e-08!8;UBERON:0010009!8.27e-08!8;UBERON:0010011!8.27e-08!8;UBERON:0000454!8.27e-08!8;UBERON:0004111!3.47e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.23e-41,54;UBERON:0002020,4.84e-39,34;UBERON:0001049,1.33e-36,52;UBERON:0005068,1.33e-36,52;UBERON:0006241,1.33e-36,52;UBERON:0007135,1.33e-36,52;UBERON:0001017,1.29e-33,73;UBERON:0001016,1.46e-32,75;UBERON:0002346,1.09e-28,64;UBERON:0003075,1.09e-28,64;UBERON:0007284,1.09e-28,64;UBERON:0003528,1.04e-27,29;UBERON:0002791,1.04e-27,29;UBERON:0001893,1.04e-27,29;UBERON:0002021,8.04e-27,10;UBERON:0000411,8.04e-27,10;UBERON:0001950,8.04e-27,10;UBERON:0000955,1.48e-26,47;UBERON:0006238,1.48e-26,47;UBERON:0002616,9.10e-25,46;UBERON:0004121,1.82e-24,95;UBERON:0000924,1.82e-24,95;UBERON:0006601,1.82e-24,95;UBERON:0010371,1.87e-24,73;UBERON:0002780,5.46e-22,39;UBERON:0001890,5.46e-22,39;UBERON:0006240,5.46e-22,39;UBERON:0003080,2.48e-21,40;UBERON:0000956,1.18e-19,21;UBERON:0001869,1.18e-19,21;UBERON:0000203,1.18e-19,21;UBERON:0010314,3.15e-18,92;UBERON:0003076,9.35e-17,12;UBERON:0003057,9.35e-17,12;UBERON:0003056,1.24e-16,49;UBERON:0002240,6.61e-16,6;UBERON:0005174,6.61e-16,6;UBERON:0001137,6.61e-16,6;UBERON:0002619,5.67e-15,17;UBERON:0001948,1.04e-13,5;UBERON:0002315,1.04e-13,5;UBERON:0000025,1.34e-13,114;UBERON:0004111,2.50e-12,122;UBERON:0002038,3.40e-10,3;UBERON:0009663,3.40e-10,3;UBERON:0009661,3.40e-10,3;UBERON:0000125,3.40e-10,3;UBERON:0002308,3.40e-10,3;UBERON:0004684,1.77e-09,3;UBERON:0002275,1.77e-09,3;UBERON:0002420,4.56e-09,8;UBERON:0007245,4.56e-09,8;UBERON:0010009,4.56e-09,8;UBERON:0010011,4.56e-09,8;UBERON:0000454,4.56e-09,8;UBERON:0011216,7.35e-09,194;UBERON:0002257,9.18e-09,3;UBERON:0002950,1.00e-07,4;UBERON:0001891,1.00e-07,4;UBERON:0009616,1.00e-07,4;UBERON:0010286,1.00e-07,4;UBERON:0000483,6.71e-07,174;UBERON:0000119,9.37e-07,176 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.281577444303333,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0.319984845586813,0,0,0,0,0,0,0,0,0.61506478758457,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0.218025156380447,0,0.388859798148567,0.139986421625363,0,0,0,0,0.257259436035947,0,0,0.809265843438391,0.528990979272033,0,0,0,0,0.988866362566974,0.7104801149461,0.599200221036809,0,1.14058573539325,2.8351247049655,0.841299845405528,3.14216082844184,3.75476519617743,0.367472397644862,0.958454710182364,0.919218786610021,4.40463523997555,3.19218345212969,5.22262213071228,0.923204014111357,2.28719109006024,2.08365348222704,9.21303896704557,5.6276261003168,5.65353516774197,3.53554302568401,3.84403538157578,1.3047961207771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0.29688427812965,0,0.608930956624282,0,0.60289056221049,0,0.251333182659351,0,0,0,0.161766849947409,0.220841518460394,0,0,0.878342391034642,4.60782754989601,0.255457055208591,0,0,0,0.748953197024114,0.457500602818626,0.879580464790051,1.21677024134594,1.27857728665165,2.70124457927428,0.486723789203273,0,0,0.505445516867349,0,0,0,0.360124259610698,0.150704817835715,0.136072998302656,0.384341160854549,0.0937017245597288,0.776110112217047,0,0.189106080167819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0,0.0810688095458557,0.292399974850665,0.219550115291051,0,0.630869845692382,0.102904612379284,0,0,0.213288250535234,0.232236671860439,0,0.403367049246685,0,0,0,0,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0.140271639780637,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0.275936746304732,1.44495530989013,1.17211686592203,0,0.252470927204373,0,0,0,0,0,0,0,0,0,1.60660658210904,0,0,0,0.164970122972535,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0,0.258717367565509,0,0.354680467284547,0,0.164549020602121,0.608929898229199,0,0,0,0.16488625294148,0,0,0,0,0,1.48340241608408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149516546043979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,4.51801474093653,5.52390283808612,4.01026859407578,2.749650917499,4.7955776383945,4.5323633843382,1.35004500046361,4.05289082901798,1.81256963593682,2.5888015587591,0.103787347584177,0,0.170733605754134,0,0.209613162627982,0,0,0.412070114477788,0.64183841918363,0.505394423527595,0.25347929989024,0,0.468207537349412,0.0640251524048693,0.287177344778066,0.952587382566147,0.231768651889711,0.192909220463705,0.824171801606613,0.294397840268795,0,0,0.238436189947321,0.581385666529314,0.188218760830661,0.169229215783353,0.365855945745545,0.526139422875686,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0.154936841185966,0,0,0.467863216890817,0,0.191288332068843,0,0.231867835620421 | |||
|short_description=p4@Rab3a | |||
}} |
Latest revision as of 17:53, 25 September 2015
Short description: | p4@Rab3a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rab3a_5end |
Coexpression cluster: | MCL_coexpression_mm9:313 |
Association with transcript: | -488bp_to_ENSMUST00000130468_5end |
EntrezGene: | Rab3a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.30e-24 | 23 |
neuroblast (sensu Vertebrata) | 1.30e-24 | 23 |
neuron | 3.84e-16 | 33 |
neuronal stem cell | 3.84e-16 | 33 |
neuroblast | 3.84e-16 | 33 |
electrically signaling cell | 3.84e-16 | 33 |
electrically responsive cell | 3.77e-13 | 39 |
electrically active cell | 3.77e-13 | 39 |
neural cell | 1.27e-11 | 43 |
ectodermal cell | 2.78e-11 | 44 |
neurectodermal cell | 2.78e-11 | 44 |
neuron of the substantia nigra | 3.40e-10 | 3 |
raphe nuclei neuron | 1.77e-09 | 3 |
neuron of the ventral spinal cord | 9.18e-09 | 3 |