FFCP PHASE1:Mm9::chr3:58329639..58329650,-: Difference between revisions
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{{FFCP|EntrezGene=28146|HGNC=|MCL_coexpression_id=341|UniProt=Q9Z1W5|association_with_transcript=144bp_to_ENSMUST00000029385_5end|description=CAGE_peak_3_at_Serp1_5end|id=chr3:58329639..58329650,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!5.37e-14!59;UBERON:0000160!1.25e-13!43;UBERON:0004119!1.45e-11!130;UBERON:0000925!1.45e-11!130;UBERON:0006595!1.45e-11!130;UBERON:0001007!3.24e-11!128;UBERON:0001555!3.24e-11!128;UBERON:0007026!3.24e-11!128;UBERON:0002100!4.16e-11!98;UBERON:0004921!1.29e-10!126;UBERON:0004185!1.29e-10!126;UBERON:0005256!7.39e-10!47;UBERON:0005177!2.26e-09!85;UBERON:0002108!2.59e-09!16;UBERON:0002365!3.89e-09!25;UBERON:0002330!3.89e-09!25;UBERON:0000466!6.18e-09!79;UBERON:0005172!2.12e-08!49;UBERON:0005173!2.12e-08!49;UBERON:0002417!2.12e-08!49;UBERON:0000916!2.12e-08!49;UBERON:0001264!3.80e-08!12;UBERON:0003922!3.80e-08!12;UBERON:0002114!3.80e-08!12;UBERON:0003923!3.80e-08!12;UBERON:0003924!3.80e-08!12;UBERON:0003921!3.80e-08!12;UBERON:0001045!5.48e-08!13;UBERON:0003104!1.45e-07!131;UBERON:0009142!1.45e-07!131;UBERON:0009854!1.92e-07!23;UBERON:0009856!1.92e-07!23;UBERON:0002107!1.92e-07!22;UBERON:0007499!1.92e-07!22;UBERON:0006925!1.92e-07!22;UBERON:0009497!1.92e-07!22;UBERON:0000015!1.92e-07!22;UBERON:0002423!1.92e-07!22;UBERON:0006235!1.92e-07!22;UBERON:0008835!1.92e-07!22;UBERON:0003894!1.92e-07!22;UBERON:0004161!1.92e-07!22;UBERON:0008836!1.92e-07!22;UBERON:0009569!5.29e-07!66|ontology_enrichment_uberon_v019_2=UBERON:0002100,3.95e-14,90;UBERON:0005177,4.95e-12,79;UBERON:0005256,2.63e-10,45;UBERON:0002365,3.89e-09,25;UBERON:0002330,3.89e-09,25;UBERON:0003104,4.66e-09,61;UBERON:0009142,4.66e-09,61;UBERON:0005172,2.12e-08,49;UBERON:0005173,2.12e-08,49;UBERON:0002417,2.12e-08,49;UBERON:0000916,2.12e-08,49;UBERON:0001264,3.80e-08,12;UBERON:0005409,5.01e-08,47;UBERON:0009854,1.92e-07,23;UBERON:0009856,1.92e-07,23;UBERON:0002107,1.92e-07,22;UBERON:0007499,1.92e-07,22;UBERON:0006925,1.92e-07,22;UBERON:0009497,1.92e-07,22;UBERON:0000015,1.92e-07,22;UBERON:0002423,1.92e-07,22;UBERON:0006235,1.92e-07,22;UBERON:0008835,1.92e-07,22;UBERON:0003894,1.92e-07,22;UBERON:0004161,1.92e-07,22;UBERON:0008836,1.92e-07,22;UBERON:0000160,2.31e-07,31;UBERON:0009569,5.28e-07,66;UBERON:0004119,7.80e-07,118;UBERON:0000925,7.80e-07,118;UBERON:0006595,7.80e-07,118|phase1_expression=5.2849119544582,53.3932373688222,55.9649064449129,39.3203474698879,47.585094344903,24.5103736991359,23.8284893407436,2.32421982194837,8.024957162645,7.2560003159818,1.88339765048055,1.19658238493005,2.05440875917447,0.874204024189974,8.32774404539157,7.28910962603373,2.79824751251259,26.0256286420546,33.8672651006175,28.434106670468,24.0672511127527,8.04256704727171,12.27639008953,17.2791816616879,19.0409703285751,41.3447014162815,26.7072437618626,28.6576739472232,18.0522248483555,17.6421090831952,25.49900872536,1.90509202037889,1.84519436275371,0,8.66554859253824,7.14808975041517,6.32925004413344,21.7636447983192,29.6907430919044,21.9879972468995,45.8820560664191,44.397956522299,40.7828696546169,9.81995180209503,8.41428529121971,8.07605709511399,6.25913075478431,6.97680500417429,6.37089929929968,8.1660557611199,9.09911740564856,7.18762821824858,54.697129574822,3.62681071005672,5.37750078627942,12.0911934936895,6.01720223871389,10.8291139378263,0.606949382578793,1.05798195854407,0.633831403506179,10.165335962074,11.5608323494448,22.9474427906757,16.8107281636386,16.3410426437603,6.2916023208865,8.06858441175265,1.65903379693564,1.62007125998029,0.841299845405528,2.57085885963423,2.65042249141936,0.857435594504678,1.34183659425531,0,0,1.65993539510744,0.768032666281217,0.923204014111357,0.457438218012048,2.08365348222704,0.837548997004143,1.68828783009504,1.83357897332172,1.76777151284201,1.99320353118744,2.23679334990361,8.32988126665025,3.55186332501892,4.34796733052517,46.4628893569949,85.6763880471766,57.2085383136086,69.5260766669006,53.7632264516803,33.4257719913569,2.89731548382698,3.11743205523443,2.47337702157238,7.04217098883402,0,10.1922095882658,14.2213340630666,11.0410430915719,10.6411143499541,13.1436355703844,41.7912999771759,31.8493596886021,18.2583831049734,9.02123699183906,10.3518262626128,16.8349312996923,15.8258772580254,9.40709657085639,14.8286577769017,7.16865406429684,11.8571472674328,4.42305275974937,5.98537344805414,7.50861162765338,11.1521308221101,9.31958806090611,1.46390398505774,1.8850203613211,27.8448190177365,6.35020159881377,11.9980546198682,8.51370521389534,0.898743836428936,0.457500602818626,1.13088916901578,1.91206752211504,2.55715457330331,2.0778804455956,1.46017136760982,5.39748628406676,10.8234064430781,11.625246887949,6.73413938836717,4.29397461776922,5.51765050640335,2.52086981727489,4.9732589885786,2.85753296435577,3.45907044769094,2.52994656311268,6.46758426847539,4.95806383745537,2.83659120251729,4.22282697993477,5.47989331068937,3.61461423993277,4.87553033131033,4.52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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=28146 | |||
|HGNC= | |||
|MCL_coexpression_id=341 | |||
|TSSclassifier=NA | |||
|UniProt=Q9Z1W5 | |||
|association_with_transcript=144bp_to_ENSMUST00000029385_5end | |||
|cluster_id=chr3:58329639..58329650,- | |||
|description=CAGE_peak_3_at_Serp1_5end | |||
|id=chr3:58329639..58329650,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!5.37e-14!59;UBERON:0000160!1.25e-13!43;UBERON:0004119!1.45e-11!130;UBERON:0000925!1.45e-11!130;UBERON:0006595!1.45e-11!130;UBERON:0001007!3.24e-11!128;UBERON:0001555!3.24e-11!128;UBERON:0007026!3.24e-11!128;UBERON:0002100!4.16e-11!98;UBERON:0004921!1.29e-10!126;UBERON:0004185!1.29e-10!126;UBERON:0005256!7.39e-10!47;UBERON:0005177!2.26e-09!85;UBERON:0002108!2.59e-09!16;UBERON:0002365!3.89e-09!25;UBERON:0002330!3.89e-09!25;UBERON:0000466!6.18e-09!79;UBERON:0005172!2.12e-08!49;UBERON:0005173!2.12e-08!49;UBERON:0002417!2.12e-08!49;UBERON:0000916!2.12e-08!49;UBERON:0001264!3.80e-08!12;UBERON:0003922!3.80e-08!12;UBERON:0002114!3.80e-08!12;UBERON:0003923!3.80e-08!12;UBERON:0003924!3.80e-08!12;UBERON:0003921!3.80e-08!12;UBERON:0001045!5.48e-08!13;UBERON:0003104!1.45e-07!131;UBERON:0009142!1.45e-07!131;UBERON:0009854!1.92e-07!23;UBERON:0009856!1.92e-07!23;UBERON:0002107!1.92e-07!22;UBERON:0007499!1.92e-07!22;UBERON:0006925!1.92e-07!22;UBERON:0009497!1.92e-07!22;UBERON:0000015!1.92e-07!22;UBERON:0002423!1.92e-07!22;UBERON:0006235!1.92e-07!22;UBERON:0008835!1.92e-07!22;UBERON:0003894!1.92e-07!22;UBERON:0004161!1.92e-07!22;UBERON:0008836!1.92e-07!22;UBERON:0009569!5.29e-07!66 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,3.95e-14,90;UBERON:0005177,4.95e-12,79;UBERON:0005256,2.63e-10,45;UBERON:0002365,3.89e-09,25;UBERON:0002330,3.89e-09,25;UBERON:0003104,4.66e-09,61;UBERON:0009142,4.66e-09,61;UBERON:0005172,2.12e-08,49;UBERON:0005173,2.12e-08,49;UBERON:0002417,2.12e-08,49;UBERON:0000916,2.12e-08,49;UBERON:0001264,3.80e-08,12;UBERON:0005409,5.01e-08,47;UBERON:0009854,1.92e-07,23;UBERON:0009856,1.92e-07,23;UBERON:0002107,1.92e-07,22;UBERON:0007499,1.92e-07,22;UBERON:0006925,1.92e-07,22;UBERON:0009497,1.92e-07,22;UBERON:0000015,1.92e-07,22;UBERON:0002423,1.92e-07,22;UBERON:0006235,1.92e-07,22;UBERON:0008835,1.92e-07,22;UBERON:0003894,1.92e-07,22;UBERON:0004161,1.92e-07,22;UBERON:0008836,1.92e-07,22;UBERON:0000160,2.31e-07,31;UBERON:0009569,5.28e-07,66;UBERON:0004119,7.80e-07,118;UBERON:0000925,7.80e-07,118;UBERON:0006595,7.80e-07,118 | |||
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| |||
|short_description=p3@Serp1 | |||
}} |
Latest revision as of 14:55, 25 September 2015
Short description: | p3@Serp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Serp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:341 |
Association with transcript: | 144bp_to_ENSMUST00000029385_5end |
EntrezGene: | Serp1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
trunk | 3.95e-14 | 90 |
trunk region element | 4.95e-12 | 79 |
trunk mesenchyme | 2.63e-10 | 45 |
exocrine gland | 3.89e-09 | 25 |
exocrine system | 3.89e-09 | 25 |
mesenchyme | 4.66e-09 | 61 |
entire embryonic mesenchyme | 4.66e-09 | 61 |
abdomen element | 2.12e-08 | 49 |
abdominal segment element | 2.12e-08 | 49 |
abdominal segment of trunk | 2.12e-08 | 49 |
abdomen | 2.12e-08 | 49 |
pancreas | 3.80e-08 | 12 |
gastrointestinal system | 5.01e-08 | 47 |
digestive tract diverticulum | 1.92e-07 | 23 |
sac | 1.92e-07 | 23 |
liver | 1.92e-07 | 22 |
epithelial sac | 1.92e-07 | 22 |
digestive gland | 1.92e-07 | 22 |
epithelium of foregut-midgut junction | 1.92e-07 | 22 |
anatomical boundary | 1.92e-07 | 22 |
hepatobiliary system | 1.92e-07 | 22 |
foregut-midgut junction | 1.92e-07 | 22 |
hepatic diverticulum | 1.92e-07 | 22 |
liver primordium | 1.92e-07 | 22 |
septum transversum | 1.92e-07 | 22 |
liver bud | 1.92e-07 | 22 |
intestine | 2.31e-07 | 31 |
subdivision of trunk | 5.28e-07 | 66 |
endoderm-derived structure | 7.80e-07 | 118 |
endoderm | 7.80e-07 | 118 |
presumptive endoderm | 7.80e-07 | 118 |