FFCP PHASE1:Hg19::chr2:228680160..228680220,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6364 | |EntrezGene=6364 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10619 | |HGNC=10619 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=75bp_to_ENST00000473642_5end | |association_with_transcript=75bp_to_ENST00000473642_5end | ||
|cluster_id=chr2:228680160..228680220,+ | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_2_at_CCL20_5end | |description=CAGE_peak_2_at_CCL20_5end | ||
|id=chr2:228680160..228680220,+ | |id=chr2:228680160..228680220,+ | ||
|ontology_enrichment_celltype=CL:0000860;3.95e-25;33!CL:0002057;3.95e-25;33!CL:0000473;5.00e-17;39!CL:0000234;5.00e-17;39!CL:0000576;1.00e-13;48!CL:0000766;2.32e-09;69!CL:0002602;2.06e-07;2!CL:0002554;6.47e-07;2 | |ontology_enrichment_celltype=CL:0002057!4.44e-16!42;CL:0000860!3.13e-15!45;CL:0002009!2.40e-09!65;CL:0002194!3.02e-09!63;CL:0000576!3.02e-09!63;CL:0000040!3.02e-09!63;CL:0000559!3.02e-09!63;CL:0000557!9.10e-08!71;CL:0000034!1.51e-07!444;CL:0000723!1.60e-07!436;CL:0000048!1.78e-07!430;CL:0000839!2.04e-07!70;CL:0002371!5.82e-07!591 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;3.95e-25;33!CL:0002057;3.95e-25;33!CL:0000473;5.00e-17;39!CL:0000234;5.00e-17;39!CL:0000576;1.00e-13;48!CL:0000766;2.32e-09;69!CL:0002602;2.06e-07;2!CL:0002554;6.47e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.69e-28,42;CL:0002057,5.69e-28,42;CL:0000473,9.75e-24,48;CL:0000234,9.75e-24,48;CL:0002194,7.83e-18,59;CL:0000576,7.83e-18,59;CL:0000040,7.83e-18,59;CL:0000559,7.83e-18,59;CL:0002009,4.49e-17,61;CL:0000839,2.23e-15,66;CL:0000557,4.53e-15,67;CL:0000766,1.17e-13,72;CL:0002087,2.20e-08,115;CL:0000048,9.67e-08,427;CL:0000034,1.21e-07,441;CL:0000723,1.82e-07,433;CL:0000763,2.02e-07,108;CL:0000049,2.02e-07,108;CL:0002602,2.03e-07,2;CL:0002554,4.01e-07,2;CL:0002031,5.32e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;7.30e-20;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0001473;5.85e-09;8!UBERON:0004536;5.85e-09;8!UBERON:0006558;5.85e-09;8!UBERON:0006444;2.06e-07;2!UBERON:0001995;2.06e-07;2!UBERON:0004715;2.06e-07;2!UBERON:0002465;4.25e-07;10 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!1.60e-11!115;UBERON:0002204!1.80e-09!167;UBERON:0002371!2.53e-09!80;UBERON:0002193!7.10e-09!112;UBERON:0001474!2.04e-08!86;UBERON:0004765!7.39e-08!101;UBERON:0001434!7.39e-08!101;UBERON:0002390!4.46e-07!102;UBERON:0003061!4.46e-07!102;UBERON:0000926!7.84e-07!448;UBERON:0004120!7.84e-07!448;UBERON:0006603!7.84e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;5.85e-09;8!UBERON:0004536;5.85e-09;8!UBERON:0006558;5.85e-09;8!UBERON:0006444;2.06e-07;2!UBERON:0001995;2.06e-07;2!UBERON:0004715;2.06e-07;2!UBERON:0002465;4.25e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,1.86e-18,93;UBERON:0004765,1.51e-16,90;UBERON:0002193,3.44e-16,108;UBERON:0002371,1.35e-15,76;UBERON:0001434,3.19e-14,100;UBERON:0001474,5.00e-14,82;UBERON:0002204,2.84e-13,167;UBERON:0002390,6.19e-12,98;UBERON:0003061,6.19e-12,98;UBERON:0001473,7.12e-09,8;UBERON:0004536,7.12e-09,8;UBERON:0006558,7.12e-09,8;UBERON:0006444,2.03e-07,2;UBERON:0001995,2.03e-07,2;UBERON:0004715,2.03e-07,2;UBERON:0003081,3.06e-07,203;UBERON:0002465,4.96e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0.218441372130172,0.263766978228454,3.46545788288131,11.5989081504771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21598163412751,1.60435557976113,1.95309783644267,0.223915474239924,0,0,0.145398238779565,0,0,0.929716147622738,1.6446715520873,4.02618282163635,2.8769239232215,2.56160706529101,1.89185783910868,28.958637181876,21.3009945582663,16.251178391321,0.752969358170419,0.272906150057846,1.12361742222542,32.4448925913157,18.2929545433373,41.5569131769377,0,0,0,37.7272010217159,36.3126543802329,40.4834461847124,0.502497330513487,0.521482918420201,0.868755378820466,14.5295880632009,27.2525450630798,36.3931745557017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0.263384084775077,0,0.786021525498329,0.205601498999509,0,0,0,0,0.111410456885174,0.883817722424512,0.443067789167242,0.812411591295047,0.384273959177026,0.130059347559878,0,0,0,0,0,0,0,0,0,0.506039384039006,0,0,0,0,0,0,0,0,0.604820229674197,0,0,0,0,0.767175371061182,0,0,0,0,0,0,0,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.860509862246441,0,0,0,0,1.55605517699883,0,0.163461903113459,0.302714855289863,0.576175924479999,0.70296429550139,0,0,0.149448680551801,0.587172493218824,0,0.280901613404497,0.204154171254893,0,0,0,0,1.82032272387605,3.59309070908119,0,0,0,0,0,0,0.680593098960126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,0,1.39310378409594,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,1.3725424823882,0.109750285408626,0,0,0.0925884451585296,0,1.03993478527958,0,0,0.234817388471643,1.01056513432752,2.77791307545966,1.14152491340759,0,0,0,0,0,0,0,0.141775097242386,0.806026704325635,0.871901815541886,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448524337381443,0,0.2933531432838,0,0,1.690605505112,0,0,0.771622122786426,1.41849132023278,0.799266537048298,1.57275793023962,0.542621605391443,0,1.95441710576241,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.61642896765115,0,0,0,0,0.128343036279748,0,1.30139853857622,0,0,0,0,0,0,0.858840442033979,0.500170521059677,7.05289061619313,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0.206768026122887,0.862856803274467,1.49418580924822,0.303127571446259,0,0,0,0,0,0,0,0.160853921143607,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0.254876273045038,0,0,0,0,0,0.328014645699706,2.27764876265012,0.103041011647722,0,0,0,0,0,0,3.69716681075147,2.76306614507033,0.827019434907183,1.28904293841928,0.290033387828457,0.170453254832202,0,0.330569830721956,0.192190067365106,1.14851441245126,0.30347334256665,0,0,0,0,0,0,0,0.286249773483982,0,1.2655176988749,0.38126038784765,0.767693373934002,0.42793898803392,0,0,0.179872457583315,1.37268514868027,0.235624804691373,1.01091240786658,1.58510321173008,0,0,1.21856744815642,0,0,0,0,0,0,1.75380354101505,0.578775534266688,0,0.202910376962704,0,0,0,0,0,0,0,0.329294892959902,0.379473173765715,0.349934720244983,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.07229042003222,0,15.6651958070608,0,0,0,3.13127361030843,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,4.44547960578548,0,0,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341826167541004,0,0,0,1.5950057986596,0,0,0,0,0,0,0,0,0,0,1.47698645169619,0.652931232636591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0.664653872707185,0.330991955875499,0.313932918407225,0,1.42304773014896,0,0,0,0,0,0,0,0.0730893170861856,0,0,0.0882561266915003,0,0,0.596143835108969,0,0,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0.717873024576814,0,0,0,0,0,0,1.10296455230113,1.40106959247983,1.48287796479207,0.0984274815147488,0.0846733320657845,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0.105600336519406,6.63363155531526,0,0,0,4.5768336777855,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0.213574825135389,3.30129040709298,0,0,0,0,0,0.544017803369474,0,0.306345576763462,0.327872630709804,0,0,0.122026264901963,0,0,0,0,0,0,0.303298235083296,0,0,0,0,0,0,0,0,0,0.889811221596536,0.228840068396924,0.151230923763239,0.621748802331122,0.443565449968902,0.159296767163702,2.24901556081802,0.155262956876259,0,0.265841714557995,0,0,0,0.406870733204662,0.727394636810238,0.214821114084977,1.39210127963548,0.398095888698616,0.800055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0.771656153083659,0,0,0,0,0,0,0,0,0,3.19504781379835,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828864656652147,0,0,0,0,0,0,0,0,0.955538938977433,0,0,0.731507549893617,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0.26796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| ||
|short_description=p2@CCL20 | |short_description=p2@CCL20 | ||
}} | }} |
Latest revision as of 04:17, 25 September 2015
Short description: | p2@CCL20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CCL20_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 75bp_to_ENST00000473642_5end |
EntrezGene: | CCL20 |
HGNC: | 10619 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.69e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.69e-28 | 42 |
defensive cell | 9.75e-24 | 48 |
phagocyte | 9.75e-24 | 48 |
monopoietic cell | 7.83e-18 | 59 |
monocyte | 7.83e-18 | 59 |
monoblast | 7.83e-18 | 59 |
promonocyte | 7.83e-18 | 59 |
macrophage dendritic cell progenitor | 4.49e-17 | 61 |
myeloid lineage restricted progenitor cell | 2.23e-15 | 66 |
granulocyte monocyte progenitor cell | 4.53e-15 | 67 |
myeloid leukocyte | 1.17e-13 | 72 |
nongranular leukocyte | 2.20e-08 | 115 |
multi fate stem cell | 9.67e-08 | 427 |
stem cell | 1.21e-07 | 441 |
somatic stem cell | 1.82e-07 | 433 |
myeloid cell | 2.02e-07 | 108 |
common myeloid progenitor | 2.02e-07 | 108 |
annulus pulposus cell | 2.03e-07 | 2 |
fibroblast of lymphatic vessel | 4.01e-07 | 2 |
hematopoietic lineage restricted progenitor cell | 5.32e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
immune system | 1.86e-18 | 93 |
skeletal element | 1.51e-16 | 90 |
hemolymphoid system | 3.44e-16 | 108 |
bone marrow | 1.35e-15 | 76 |
skeletal system | 3.19e-14 | 100 |
bone element | 5.00e-14 | 82 |
musculoskeletal system | 2.84e-13 | 167 |
hematopoietic system | 6.19e-12 | 98 |
blood island | 6.19e-12 | 98 |
lymphatic vessel | 7.12e-09 | 8 |
lymph vasculature | 7.12e-09 | 8 |
lymphatic part of lymphoid system | 7.12e-09 | 8 |
annulus fibrosus | 2.03e-07 | 2 |
fibrocartilage | 2.03e-07 | 2 |
annulus fibrosus disci intervertebralis | 2.03e-07 | 2 |
lateral plate mesoderm | 3.06e-07 | 203 |
lymphoid system | 4.96e-07 | 10 |