FFCP PHASE1:Hg19::chr2:228678550..228678570,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6364 | |EntrezGene=6364 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10619 | |HGNC=10619 | ||
|TSSclassifier=strong | |||
|UniProt=P78556 | |UniProt=P78556 | ||
|association_with_transcript=0bp_to_ENST00000358813,ENST00000409189,ENST00000489160,NM_001130046,NM_004591,uc002vpl.2,uc002vpm.2_5end | |association_with_transcript=0bp_to_ENST00000358813,ENST00000409189,ENST00000489160,NM_001130046,NM_004591,uc002vpl.2,uc002vpm.2_5end | ||
|cluster_id=chr2:228678550..228678570,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_CCL20_5end | |description=CAGE_peak_1_at_CCL20_5end | ||
|id=chr2:228678550..228678570,+ | |id=chr2:228678550..228678570,+ | ||
|ontology_enrichment_celltype=CL:0000860!8.60e-15!45;CL:0002057!1.15e-14!42;CL:0000766!1.75e-11!76;CL:0002009!3.64e-11!65;CL:0002371!9.51e-11!591;CL:0002194!2.80e-10!63;CL:0000576!2.80e-10!63;CL:0000040!2.80e-10!63;CL:0000559!2.80e-10!63;CL:0000012!1.21e-09!682;CL:0000557!1.36e-09!71;CL:0000548!3.44e-09!679;CL:0000004!3.44e-09!679;CL:0000255!3.44e-09!679;CL:0000223!8.86e-09!59;CL:0000839!2.39e-08!70;CL:0002076!3.46e-08!43;CL:0000144!3.53e-08!625;CL:0000359!4.85e-08!32;CL:0000680!5.46e-08!57;CL:0000056!5.46e-08!57;CL:0000355!5.46e-08!57;CL:0000220!1.53e-07!246;CL:0000187!2.11e-07!54;CL:0002321!3.93e-07!248;CL:0000192!8.25e-07!42;CL:0000514!8.25e-07!42 | |ontology_enrichment_celltype=CL:0000860!8.60e-15!45;CL:0002057!1.15e-14!42;CL:0000766!1.75e-11!76;CL:0002009!3.64e-11!65;CL:0002371!9.51e-11!591;CL:0002194!2.80e-10!63;CL:0000576!2.80e-10!63;CL:0000040!2.80e-10!63;CL:0000559!2.80e-10!63;CL:0000012!1.21e-09!682;CL:0000557!1.36e-09!71;CL:0000548!3.44e-09!679;CL:0000004!3.44e-09!679;CL:0000255!3.44e-09!679;CL:0000223!8.86e-09!59;CL:0000839!2.39e-08!70;CL:0002076!3.46e-08!43;CL:0000144!3.53e-08!625;CL:0000359!4.85e-08!32;CL:0000680!5.46e-08!57;CL:0000056!5.46e-08!57;CL:0000355!5.46e-08!57;CL:0000220!1.53e-07!246;CL:0000187!2.11e-07!54;CL:0002321!3.93e-07!248;CL:0000192!8.25e-07!42;CL:0000514!8.25e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000860;8.16e-17;33!CL:0002057;8.16e-17;33!CL:0000473;2.33e-11;39!CL:0000234;2.33e-11;39!CL:0000576;7.46e-08;48!CL:0000359;8.85e-08;32!CL:0002076;1.33e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.26e-15,42;CL:0002057,1.26e-15,42;CL:0000473,2.09e-13,48;CL:0000234,2.09e-13,48;CL:0000766,1.10e-10,72;CL:0002009,3.07e-10,61;CL:0000223,2.51e-09,58;CL:0002194,2.75e-09,59;CL:0000576,2.75e-09,59;CL:0000040,2.75e-09,59;CL:0000559,2.75e-09,59;CL:0000557,9.02e-09,67;CL:0002076,1.48e-08,42;CL:0000680,2.33e-08,58;CL:0000056,2.33e-08,58;CL:0000355,2.33e-08,58;CL:0000359,4.08e-08,32;CL:0000187,1.07e-07,55;CL:0000839,1.42e-07,66;CL:0000192,4.86e-07,43;CL:0000514,4.86e-07,43;CL:0002321,5.06e-07,250 | |||
|ontology_enrichment_development_v019=CL:0002057;6.80e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!2.50e-15!448;UBERON:0004120!2.50e-15!448;UBERON:0006603!2.50e-15!448;UBERON:0002405!6.54e-13!115;UBERON:0002204!2.62e-11!167;UBERON:0003104!4.53e-10!238;UBERON:0009142!4.53e-10!238;UBERON:0000486!7.78e-10!82;UBERON:0002193!2.92e-09!112;UBERON:0000467!3.55e-09!625;UBERON:0000923!3.81e-09!604;UBERON:0005291!3.81e-09!604;UBERON:0006598!3.81e-09!604;UBERON:0002532!3.81e-09!604;UBERON:0000480!5.58e-09!626;UBERON:0002050!5.97e-09!605;UBERON:0005423!5.97e-09!605;UBERON:0002371!1.51e-08!80;UBERON:0000922!1.72e-08!612;UBERON:0003081!1.90e-08!216;UBERON:0000468!1.02e-07!659;UBERON:0005256!1.10e-07!143;UBERON:0004119!1.28e-07!169;UBERON:0000925!1.28e-07!169;UBERON:0006595!1.28e-07!169;UBERON:0002100!2.19e-07!216;UBERON:0000490!2.29e-07!138;UBERON:0004290!5.53e-07!70;UBERON:0003914!5.69e-07!118;UBERON:0002390!6.57e-07!102;UBERON:0003061!6.57e-07!102;UBERON:0001134!7.19e-07!61;UBERON:0002036!7.19e-07!61;UBERON:0003082!7.19e-07!61 | |||
|ontology_enrichment_uberon_v019= | |||
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|phase1_expression=0.363356758541113,0.214100523890983,0.563817616383885,0,0,0,7.59899634504932,4.42203911398782,0.261185628199839,26.0477972691599,12.5604210235037,0.218441372130172,0,1.23766352960047,0.331397375727916,62.5262386200151,48.2155622419181,32.8639540674318,33.1794303177545,0,0,0,0.85870796139317,1.09499540058307,0.753255837568817,3.2857764471619,3.69452652524756,2.36132343941038,22.8151280572364,26.1003990706105,16.255692948188,10.1136334692682,4.51808878167375,7.02532619316897,0,0,3.22960483268332,284.199644576853,234.436459092596,118.053913669423,0.895661896959697,0.971680998056939,0.515151135268373,13.0858414901608,9.44689859222024,21.10481332334,371.189171938378,405.41153758952,1303.86382146839,534.244772542233,359.393471260328,1234.43724001841,8080.83875646634,6454.84683583826,9830.60866188327,113.698373083733,79.688595816891,395.513332623349,9215.57383150314,8045.04885074351,9707.69491813264,2.96866170168044,3.78980949481101,14.0654167675789,14138.4136875074,9491.22003863339,15227.3811656928,76.6308429033067,109.511412868242,279.30485429078,8369.64812390632,18995.3921866026,23790.3764382559,0,0.637812899895131,1.04829322754188,0.673971786878971,1.20141514273205,0.48217676009124,0,0,0.182664153764634,0,0,0,0,0,0,0,0,1.1384259382189,22.9022503854666,9.93910393125595,19.8256992868539,312.203269580716,0,1.180258620683,0.786021525498329,3.70082698199117,0,0,0,0,0.111410456885174,0.294605907474837,0.443067789167242,0,0.512365278902701,0.130059347559878,0,0,0,0,0,0,0.226618685395132,2.29932296161153,0.68725489096526,0.253019692019503,0,0,0,0,0,0,0,0,9.47551693156242,0.267440195783507,0.144824403882799,2.43806866313962,1.34140171940727,2.68511379871414,0,0,0.289693037921647,32.6067238290951,41.363963975724,21.8375427648997,8.42571710357743,17.0399484244665,1.76821751921912,12.3860398019464,2.96627554227544,0.324547393654683,0.174129737299267,0.132957960518865,38.8739717617707,8.00792875092179,15.2297575545122,0,0,0,0,0.419499436209906,0.275118041940067,0.626984899610432,1.03366703667732,3.20189636418039,4.35136796594071,14.5018554159293,17.4862584315258,12.935289050053,1.83831540172934,0.81014194788176,0.0892997282840798,0.22452937262617,0.337834441449967,0,0,0.549605231791222,57.9833836718678,155.11210565933,30.0904895978349,1.49091585508596,1.01304409331664,5.95841313659485,0.573673241497627,6.73869926176878,0.560677600142307,10.6748995729705,0.49333509683432,0.622422070799533,4.71487352243908,0.490385709340376,1.05950199351452,0,3.51482147750695,8.74048215124897,2.85235910772225,5.67904986096844,6.6937664226946,2.75184005425824,0.842704840213491,0,0,0.206651562351531,1.18800285728205,1.7308685049499,10.0117749813183,13.6537446945085,0,0,0,0,0,22.3854707770829,2.49550802952046,0,0,0.635795703478686,0,0.206105058476878,0,0,0,0,0.252433774244115,0.184099797284599,0,0,0,0.339121184620975,34.9802144225567,121.372023662921,38.7186203775155,0,0,0.116193942869518,0.310983165046111,0,0,7.8224766164908,0,0,59.9034627161253,20.934504968418,1.30137480043828,0,0.241011029883482,1.32352767278873,0.653638332277218,0.474541238222193,8.08987848960986,0.98110732562673,1.92373578473195,0,0,0.8231480226628,0,0,45.2100519671708,0.590789906681404,0,8.11723694384549,18.1861878916437,15.3650399572076,13.4882103909143,4.32274581370013,62.8675542626416,0.325808305310325,0,5.77325368101093,1.507095264676,3.99189560401794,643.441257671106,710.682761805097,506.456553248501,0,0,0,0,0.148631162288728,379.622027646447,99.4454198937248,164.175562606684,9.94099602001616,10.7534557250166,1.15014803749563,0,0,2.69526550203004,1.44119953416961,0.50496973370552,1.07946420296687,0,0,5.13217338068116,0,0,0,7.28852048244845,0.87192013766656,8.6539177268721,2.32689088364,3.57656445851882,24.513779824124,0,0,3.60090323966999,1.41849132023278,0.532844358032199,10.5803715307029,0.542621605391443,0.823240336780769,19.5441710576241,7.81862287233601,4.75171123760058,2.41151501647669,0,0.199945982364114,10.9461402577071,0.502257091432126,6.32501818449095,0,0,0,21.8619773068045,1.43833425785268,11.8180235738331,0,20.0971375405966,1.2937654491571,2.56686072559497,0,0,0,0,1.91381625495949,2.24702107184155,5.9832291840805,5.8018171881045,0.981531933753119,0.500170521059677,3.7977103317963,0,0.178428988797162,0,0.117141414992713,0.902838299183157,0,2.0694614258501,0,0,0.173767228936166,0.195801157462741,0,2.89475236572042,50.9085513931936,150.165673829446,1.21251028578504,0,0.604780586659361,0.744323423456331,0.306923946576125,0,0.256278298511402,0.511707249066704,1.12597744800525,0,1.3878872442239,0.710246901252508,0.246381468041427,7.78881643775432,0.697262270759755,7.00984807631409,17.2435564460825,2.20994373446151,0,0,0,1.80479845162965,11.2442392172446,0,1.46139224653261,36.9430701125065,0,0.510281115829547,2.59099099322567,3.08454505380579,0.812839312631559,0,8.6657932835313,1.66215201785745,0,0,0,0.256450125116389,0,11.3882438132506,50.3870546957362,0,0,153.903164182974,37.0534340240817,4.82051789532479,0.773365746336976,20.6425146933623,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| ||
|short_description=p1@CCL20 | |short_description=p1@CCL20 | ||
}} | }} |
Latest revision as of 04:16, 25 September 2015
Short description: | p1@CCL20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCL20_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000358813, ENST00000409189, ENST00000489160, NM_001130046, NM_004591, uc002vpl.2, uc002vpm.2_5end |
EntrezGene: | CCL20 |
HGNC: | 10619 |
UniProt: | P78556 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.26e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.26e-15 | 42 |
defensive cell | 2.09e-13 | 48 |
phagocyte | 2.09e-13 | 48 |
myeloid leukocyte | 1.10e-10 | 72 |
macrophage dendritic cell progenitor | 3.07e-10 | 61 |
endodermal cell | 2.51e-09 | 58 |
monopoietic cell | 2.75e-09 | 59 |
monocyte | 2.75e-09 | 59 |
monoblast | 2.75e-09 | 59 |
promonocyte | 2.75e-09 | 59 |
granulocyte monocyte progenitor cell | 9.02e-09 | 67 |
endo-epithelial cell | 1.48e-08 | 42 |
muscle precursor cell | 2.33e-08 | 58 |
myoblast | 2.33e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.33e-08 | 58 |
vascular associated smooth muscle cell | 4.08e-08 | 32 |
muscle cell | 1.07e-07 | 55 |
myeloid lineage restricted progenitor cell | 1.42e-07 | 66 |
smooth muscle cell | 4.86e-07 | 43 |
smooth muscle myoblast | 4.86e-07 | 43 |
embryonic cell | 5.06e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 1.01e-10 | 167 |
multilaminar epithelium | 2.46e-10 | 83 |
immune system | 3.84e-10 | 93 |
hemolymphoid system | 6.82e-09 | 108 |
developing anatomical structure | 3.73e-08 | 581 |
trunk mesenchyme | 4.59e-08 | 122 |
embryo | 9.73e-08 | 592 |
endoderm-derived structure | 1.12e-07 | 160 |
endoderm | 1.12e-07 | 160 |
presumptive endoderm | 1.12e-07 | 160 |
bone marrow | 1.47e-07 | 76 |
mesenchyme | 1.61e-07 | 160 |
entire embryonic mesenchyme | 1.61e-07 | 160 |
trunk | 1.88e-07 | 199 |
somite | 4.68e-07 | 71 |
presomitic mesoderm | 4.68e-07 | 71 |
presumptive segmental plate | 4.68e-07 | 71 |
dermomyotome | 4.68e-07 | 71 |
trunk paraxial mesoderm | 4.68e-07 | 71 |
unilaminar epithelium | 4.94e-07 | 148 |
skeletal muscle tissue | 5.95e-07 | 62 |
striated muscle tissue | 5.95e-07 | 62 |
myotome | 5.95e-07 | 62 |
muscle tissue | 7.95e-07 | 64 |
musculature | 7.95e-07 | 64 |
musculature of body | 7.95e-07 | 64 |
embryonic structure | 8.99e-07 | 564 |
paraxial mesoderm | 9.18e-07 | 72 |
presumptive paraxial mesoderm | 9.18e-07 | 72 |