FFCP PHASE1:Hg19::chr5:140743859..140743876,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56110 | |EntrezGene=56110 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8703 | |HGNC=8703 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y5G8 | |UniProt=Q9Y5G8 | ||
|association_with_transcript=-21bp_to_ENST00000518069,NM_018918,NM_032054,uc003lju.1,uc011das.1_5end | |association_with_transcript=-21bp_to_ENST00000518069,NM_018918,NM_032054,uc003lju.1,uc011das.1_5end | ||
|cluster_id=chr5:140743859..140743876,+ | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_2_at_PCDHGA5_5end | |description=CAGE_peak_2_at_PCDHGA5_5end | ||
|id=chr5:140743859..140743876,+ | |id=chr5:140743859..140743876,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,5.54e-09,8 | |||
|ontology_enrichment_development_v019=UBERON:0010115;1.01e-08;1!UBERON:0005425;1.01e-08;1!UBERON:0005062;1.53e-08;4!UBERON:0007284;1.53e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;3.05e-09;1!DOID:4549;3.05e-09;1!DOID:5861;3.05e-09;1!DOID:6496;3.05e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,3.06e-09,1;DOID:4549,3.06e-09,1;DOID:5861,3.06e-09,1;DOID:6496,3.06e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.01e-49!115;UBERON:0001049!5.95e-33!57;UBERON:0005068!5.95e-33!57;UBERON:0006241!5.95e-33!57;UBERON:0007135!5.95e-33!57;UBERON:0001017!3.55e-30!82;UBERON:0005743!1.54e-29!86;UBERON:0002780!2.30e-28!41;UBERON:0001890!2.30e-28!41;UBERON:0006240!2.30e-28!41;UBERON:0003080!1.87e-27!42;UBERON:0000073!8.59e-27!94;UBERON:0001016!8.59e-27!94;UBERON:0002616!1.19e-25!59;UBERON:0003075!2.62e-24!86;UBERON:0007284!2.62e-24!86;UBERON:0001893!3.64e-24!34;UBERON:0001869!7.49e-24!32;UBERON:0002020!8.47e-24!34;UBERON:0003528!8.47e-24!34;UBERON:0002346!1.04e-23!90;UBERON:0002791!4.91e-23!33;UBERON:0000955!6.22e-21!69;UBERON:0006238!6.22e-21!69;UBERON:0000956!1.01e-20!25;UBERON:0000203!1.01e-20!25;UBERON:0002619!5.64e-20!22;UBERON:0001950!6.03e-20!20;UBERON:0003056!3.64e-17!61;UBERON:0004121!6.01e-14!169;UBERON:0000924!6.78e-14!173;UBERON:0006601!6.78e-14!173;UBERON:0000153!6.78e-12!129;UBERON:0007811!6.78e-12!129;UBERON:0000033!6.22e-11!123;UBERON:0000025!8.73e-11!194;UBERON:0004111!1.06e-10!241;UBERON:0001871!4.43e-09!7;UBERON:0000200!5.07e-09!6;UBERON:0000477!6.80e-09!286;UBERON:0000468!7.05e-08!659;UBERON:0000481!6.19e-07!347;UBERON:0003076!6.57e-07!15;UBERON:0003057!6.57e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002133;3.42e-16;2!UBERON:0003978;4.20e-11;3!UBERON:0000946;4.20e-11;3!UBERON:0002134;3.43e-09;1!UBERON:0005208;3.43e-09;1!UBERON:0004145;3.43e-09;1!UBERON:0005946;3.43e-09;1!UBERON:0005965;3.43e-09;1!UBERON:0002078;3.43e-09;1!UBERON:0001950;9.94e-09;20!UBERON:0002363;1.01e-08;1!UBERON:0005795;1.01e-08;1!UBERON:0002135;1.01e-08;1!UBERON:0000941;1.01e-08;1!UBERON:0007195;1.01e-08;1!UBERON:0001785;1.01e-08;1!UBERON:0002464;1.01e-08;1!UBERON:0004904;1.01e-08;1!UBERON:0001021;1.01e-08;1!UBERON:0002784;2.57e-08;4!UBERON:0002619;5.95e-08;22!UBERON:0000956;5.22e-07;25!UBERON:0000203;5.22e-07;25!UBERON:0002021;5.39e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002133,1.60e-16,2;UBERON:0003978,2.54e-11,3;UBERON:0009751,2.54e-11,3;UBERON:0000946,2.54e-11,3;UBERON:0002523,2.54e-11,3;UBERON:0005983,2.54e-11,3;UBERON:0002165,2.54e-11,3;UBERON:0002062,2.54e-11,3;UBERON:0007280,2.54e-11,3;UBERON:0001016,3.04e-11,89;UBERON:0001017,9.84e-11,81;UBERON:0002134,3.31e-09,1;UBERON:0005208,3.31e-09,1;UBERON:0005946,3.31e-09,1;UBERON:0005965,3.31e-09,1;UBERON:0002078,3.31e-09,1;UBERON:0002363,4.52e-09,1;UBERON:0007645,4.52e-09,1;UBERON:0007647,4.52e-09,1;UBERON:0010115,4.52e-09,1;UBERON:0002135,4.89e-09,1;UBERON:0003075,5.93e-09,82;UBERON:0007284,5.93e-09,82;UBERON:0000941,9.74e-09,1;UBERON:0001785,9.74e-09,1;UBERON:0002464,9.74e-09,1;UBERON:0004904,9.74e-09,1;UBERON:0001021,9.74e-09,1;UBERON:0003902,9.74e-09,1;UBERON:0005425,9.74e-09,1;UBERON:0001950,1.36e-08,20;UBERON:0007195,1.53e-08,1;UBERON:0002784,1.65e-08,4;UBERON:0002346,1.87e-08,86;UBERON:0002780,7.70e-08,41;UBERON:0001890,7.70e-08,41;UBERON:0003080,7.70e-08,41;UBERON:0006240,7.70e-08,41;UBERON:0002619,7.89e-08,22;UBERON:0001049,3.19e-07,56;UBERON:0005068,3.19e-07,56;UBERON:0006241,3.19e-07,56;UBERON:0007135,3.19e-07,56;UBERON:0010314,3.98e-07,132;UBERON:0000956,6.67e-07,25;UBERON:0000203,6.67e-07,25;UBERON:0002021,6.85e-07,5;UBERON:0004121,7.87e-07,171;UBERON:0000924,7.87e-07,171;UBERON:0006601,7.87e-07,171 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.12786256184353,0,1.00267582127178,0,0,0.973269740605272,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0.168776332241266,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268675568108545,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718874566474748,1.14861935834114,0,0,0,0,0,0,0,0,0.508189248444927,1.30139853857622,1.54657762555539,1.67516265334349,0.637938751653163,0,0,0,0.49076596687656,0,0,0,0,0,0.585707074963566,0.300946099727719,2.27407504055985,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0.398495976502139,0.276283915531148,0,0,0,0,0,0,0,0.394573622547734,0,1.11136990144637,0,0.0927680981618513,0,1.04171104434093,0,0,0,0,0,0,0,0,0,0.482385754501632,0,0.884634079449797,0.295547618953547,0.438770794307945,0,0,0.615602068030377,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.808813595768125,0,0.468528891450678,0,0,0,0.394584402849391,1.20990716048664,1.53036380815245,1.95878396848313,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0.387956065953678,75.2824760678497,0.90392296312213,0,0,0.253243183823515,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,1.95497680890578,0,3.58936512288407,0,0.429226048136571,0.89268582976749,0.604651252380536,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0.2249738915515,0,0.789744236554321,0,0.0788057072991982,0.577000469484979,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0,0.293104467356165,0,0.258565912723101,0.39669780522807,0,0,0.427149650270779,0.314408610199332,0.414239055347196,0,0,0,0,0,0,0,0,0,0.886068179966986,0.610131324509816,1.001527445652,0,0.665574309221114,0.496771223531068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.256916900385838,0,0.159633859057151,1.02558182120378,3.52900374710405,0.622415272177961,0.322951291263702,1.42769420259154,0,0,0,0,0.762764190934334,0,0,0.225630985047772,0,0,0,0,0,0.472763092328763,0.781078098613847,0,0.380494861163441,0.546974809018219,0,0,0,0,1.60710550763486,0,0.606965604236632,0.227662191351298,0.0887023701626388,0,0,0,0.394636641377094,0,0.667388411352415,1.02041020705668,0.314231179832004,0,0,0,0,0.428859265059938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307988420568741,0,0.485710993059139,0,0,0.118920090777569,0,0,0,0,0,0,0.490296643507811,0,0.981542335574726,1.48523200163543,0.8453114551668,0,0,0.257831551894309,0,0,0,0,1.46067277649303,0,0,0,0.407948941145488,1.74540276136151,0,0,0.462175628631418,0,0,0,0,0,0,0.0918948995348449,0,0.227336094654718,0,1.65833887891756,0,0.213233981900981,0.476128862927481,0,0.0620747142958579,0,0.12729431655633,0.404234377916439,0.217716747896961,0.342233301085281,0.26940821205835,0.573777643141411,1.33064142618405,0,0,0,0,0,0,1.22068853494722,0.665756774185513,0.201273793591026,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.12786256184353,0,1.00267582127178,0,0,0.973269740605272,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0.168776332241266,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268675568108545,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718874566474748,1.14861935834114,0,0,0,0,0,0,0,0,0.508189248444927,1.30139853857622,1.54657762555539,1.67516265334349,0.637938751653163,0,0,0,0.49076596687656,0,0,0,0,0,0.585707074963566,0.300946099727719,2.27407504055985,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0.398495976502139,0.276283915531148,0,0,0,0,0,0,0,0.394573622547734,0,1.11136990144637,0,0.0927680981618513,0,1.04171104434093,0,0,0,0,0,0,0,0,0,0.482385754501632,0,0.884634079449797,0.295547618953547,0.438770794307945,0,0,0.615602068030377,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.808813595768125,0,0.468528891450678,0,0,0,0.394584402849391,1.20990716048664,1.53036380815245,1.95878396848313,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0.387956065953678,75.2824760678497,0.90392296312213,0,0,0.253243183823515,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,1.95497680890578,0,3.58936512288407,0,0.429226048136571,0.89268582976749,0.604651252380536,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0.2249738915515,0,0.789744236554321,0,0.0788057072991982,0.577000469484979,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0,0.293104467356165,0,0.258565912723101,0.39669780522807,0,0,0.427149650270779,0.314408610199332,0.414239055347196,0,0,0,0,0,0,0,0,0,0.886068179966986,0.610131324509816,1.001527445652,0,0.665574309221114,0.496771223531068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.256916900385838,0,0.159633859057151,1.02558182120378,3.52900374710405,0.622415272177961,0.322951291263702,1.42769420259154,0,0,0,0,0.762764190934334,0,0,0.225630985047772,0,0,0,0,0,0.472763092328763,0.781078098613847,0,0.380494861163441,0.546974809018219,0,0,0,0,1.60710550763486,0,0.606965604236632,0.227662191351298,0.0887023701626388,0,0,0,0.394636641377094,0,0.667388411352415,1.02041020705668,0.314231179832004,0,0,0,0,0.428859265059938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307988420568741,0,0.485710993059139,0,0,0.118920090777569,0,0,0,0,0,0,0.490296643507811,0,0.981542335574726,1.48523200163543,0.8453114551668,0,0,0.257831551894309,0,0,0,0,1.46067277649303,0,0,0,0.407948941145488,1.74540276136151,0,0,0.462175628631418,0,0,0,0,0,0,0.0918948995348449,0,0.227336094654718,0,1.65833887891756,0,0.213233981900981,0.476128862927481,0,0.0620747142958579,0,0.12729431655633,0.404234377916439,0.217716747896961,0.342233301085281,0.26940821205835,0.573777643141411,1.33064142618405,0,0,0,0,0,0,1.22068853494722,0.665756774185513,0.201273793591026,0 | ||
|short_description=p2@PCDHGA5 | |short_description=p2@PCDHGA5 | ||
}} | }} |
Latest revision as of 04:08, 25 September 2015
Short description: | p2@PCDHGA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PCDHGA5_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -21bp_to_ENST00000518069, NM_018918, NM_032054, uc003lju.1, uc011das.1_5end |
EntrezGene: | PCDHGA5 |
HGNC: | 8703 |
UniProt: | Q9Y5G8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 5.54e-09 | 8 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 3.06e-09 | 1 |
extraosseous chondrosarcoma | 3.06e-09 | 1 |
myxoid chondrosarcoma | 3.06e-09 | 1 |
extraskeletal myxoid chondrosarcoma | 3.06e-09 | 1 |