FFCP PHASE1:Hg19::chr5:140743776..140743784,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56110 | |EntrezGene=56110 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8703 | |HGNC=8703 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y5G8 | |UniProt=Q9Y5G8 | ||
|association_with_transcript=-113bp_to_ENST00000518069,NM_018918,NM_032054,uc003lju.1,uc011das.1_5end | |association_with_transcript=-113bp_to_ENST00000518069,NM_018918,NM_032054,uc003lju.1,uc011das.1_5end | ||
|cluster_id=chr5:140743776..140743784,+ | |||
|description=CAGE_peak_6_at_PCDHGA5_5end | |description=CAGE_peak_6_at_PCDHGA5_5end | ||
|id=chr5:140743776..140743784,+ | |id=chr5:140743776..140743784,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000138;5.35e-20;6!CL:0000047;2.21e-15;2!CL:0000153;1.08e-13;9!CL:0000447;1.08e-13;9!CL:0000327;1.31e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,4.86e-20,6;CL:0000138,4.86e-20,6;CL:0000153,1.02e-13,9;CL:0000447,1.02e-13,9;CL:0000327,1.27e-08,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;9.98e-30;1!DOID:4549;9.98e-30;1!DOID:5861;9.98e-30;1!DOID:6496;9.98e-30;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,7.48e-30,1;DOID:4549,7.48e-30,1;DOID:5861,7.48e-30,1;DOID:6496,7.48e-30,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!9.45e-31!115;UBERON:0001049!3.94e-30!57;UBERON:0005068!3.94e-30!57;UBERON:0006241!3.94e-30!57;UBERON:0007135!3.94e-30!57;UBERON:0001017!1.26e-25!82;UBERON:0005743!1.92e-25!86;UBERON:0002616!1.13e-24!59;UBERON:0003075!2.20e-22!86;UBERON:0007284!2.20e-22!86;UBERON:0000073!5.03e-22!94;UBERON:0001016!5.03e-22!94;UBERON:0003080!9.21e-22!42;UBERON:0002346!6.25e-21!90;UBERON:0002780!3.22e-20!41;UBERON:0001890!3.22e-20!41;UBERON:0006240!3.22e-20!41;UBERON:0000955!1.91e-19!69;UBERON:0006238!1.91e-19!69;UBERON:0001893!7.18e-17!34;UBERON:0002020!1.42e-16!34;UBERON:0003528!1.42e-16!34;UBERON:0001869!4.31e-16!32;UBERON:0002791!1.35e-15!33;UBERON:0002619!5.74e-15!22;UBERON:0003056!2.92e-14!61;UBERON:0001950!3.60e-14!20;UBERON:0000956!8.20e-13!25;UBERON:0000203!8.20e-13!25;UBERON:0003076!1.78e-09!15;UBERON:0003057!1.78e-09!15;UBERON:0004121!2.66e-09!169;UBERON:0000033!6.35e-09!123;UBERON:0000153!6.89e-09!129;UBERON:0007811!6.89e-09!129;UBERON:0000924!7.31e-09!173;UBERON:0006601!7.31e-09!173;UBERON:0000025!3.66e-08!194;UBERON:0001872!3.08e-07!5;UBERON:0004733!3.22e-07!12;UBERON:0002028!3.22e-07!12;UBERON:0007277!3.22e-07!12;UBERON:0002021!6.69e-07!5 | |ontology_enrichment_uberon=UBERON:0007023!9.45e-31!115;UBERON:0001049!3.94e-30!57;UBERON:0005068!3.94e-30!57;UBERON:0006241!3.94e-30!57;UBERON:0007135!3.94e-30!57;UBERON:0001017!1.26e-25!82;UBERON:0005743!1.92e-25!86;UBERON:0002616!1.13e-24!59;UBERON:0003075!2.20e-22!86;UBERON:0007284!2.20e-22!86;UBERON:0000073!5.03e-22!94;UBERON:0001016!5.03e-22!94;UBERON:0003080!9.21e-22!42;UBERON:0002346!6.25e-21!90;UBERON:0002780!3.22e-20!41;UBERON:0001890!3.22e-20!41;UBERON:0006240!3.22e-20!41;UBERON:0000955!1.91e-19!69;UBERON:0006238!1.91e-19!69;UBERON:0001893!7.18e-17!34;UBERON:0002020!1.42e-16!34;UBERON:0003528!1.42e-16!34;UBERON:0001869!4.31e-16!32;UBERON:0002791!1.35e-15!33;UBERON:0002619!5.74e-15!22;UBERON:0003056!2.92e-14!61;UBERON:0001950!3.60e-14!20;UBERON:0000956!8.20e-13!25;UBERON:0000203!8.20e-13!25;UBERON:0003076!1.78e-09!15;UBERON:0003057!1.78e-09!15;UBERON:0004121!2.66e-09!169;UBERON:0000033!6.35e-09!123;UBERON:0000153!6.89e-09!129;UBERON:0007811!6.89e-09!129;UBERON:0000924!7.31e-09!173;UBERON:0006601!7.31e-09!173;UBERON:0000025!3.66e-08!194;UBERON:0001872!3.08e-07!5;UBERON:0004733!3.22e-07!12;UBERON:0002028!3.22e-07!12;UBERON:0007277!3.22e-07!12;UBERON:0002021!6.69e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0002418;7.42e-11;3!UBERON:0004755;7.42e-11;3!UBERON:0001872;6.21e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,6.73e-11,3;UBERON:0004755,6.73e-11,3;UBERON:0001872,6.77e-07,5 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.144846518960824,2.3858578411533,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0.211931901159562,0,0.103052529238439,0,0,0,0.0974370051611986,0.252433774244115,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.531876233169741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0,0.837581326671744,0,0,0,0,0.36807447515742,0,0,0,0,0,0.234282829985426,0,2.27407504055985,0,0,0.184369168541703,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.241192877250816,0,0.552896299656123,0.295547618953547,0.219385397153973,0,0,0.615602068030377,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0.337005664903385,0,0.234264445725339,0,0,0,0.789168805698781,0,1.53036380815245,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,2.47117154736201,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.399358000997982,0,0.223171457441873,0.134366944973453,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0,0.242998226632099,0,0.0788057072991982,0.419636705079985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0.628817220398664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332787154610557,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.159633859057151,0.205116364240755,0.756215088665154,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.202612753855184,0,0.413373593002368,0.253663240775627,1.09394961803644,0,0.496211178389294,0,0,0,0.336283722218824,0,0.227662191351298,0,0,0,0,0.131545547125698,0,0.111231401892069,0.235479278551542,0.314231179832004,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.475680363110274,0,0,0,0,0.874238242015829,0,0.245148321753905,0,0.392616934229891,0,0.4226557275834,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0.339957450954573,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0,0.23806443146374,0,0,0,0.0636471582781649,0.202117188958219,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.611207220914332,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.144846518960824,2.3858578411533,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0.211931901159562,0,0.103052529238439,0,0,0,0.0974370051611986,0.252433774244115,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.531876233169741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0,0.837581326671744,0,0,0,0,0.36807447515742,0,0,0,0,0,0.234282829985426,0,2.27407504055985,0,0,0.184369168541703,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.241192877250816,0,0.552896299656123,0.295547618953547,0.219385397153973,0,0,0.615602068030377,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0.337005664903385,0,0.234264445725339,0,0,0,0.789168805698781,0,1.53036380815245,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,2.47117154736201,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.399358000997982,0,0.223171457441873,0.134366944973453,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0,0.242998226632099,0,0.0788057072991982,0.419636705079985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0.628817220398664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332787154610557,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.159633859057151,0.205116364240755,0.756215088665154,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.202612753855184,0,0.413373593002368,0.253663240775627,1.09394961803644,0,0.496211178389294,0,0,0,0.336283722218824,0,0.227662191351298,0,0,0,0,0.131545547125698,0,0.111231401892069,0.235479278551542,0.314231179832004,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.475680363110274,0,0,0,0,0.874238242015829,0,0.245148321753905,0,0.392616934229891,0,0.4226557275834,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0.339957450954573,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0,0.23806443146374,0,0,0,0.0636471582781649,0.202117188958219,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.611207220914332,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p6@PCDHGA5 | |short_description=p6@PCDHGA5 | ||
}} | }} |
Latest revision as of 04:04, 25 September 2015
Short description: | p6@PCDHGA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PCDHGA5_5end |
Coexpression cluster: | NA |
Association with transcript: | -113bp_to_ENST00000518069, NM_018918, NM_032054, uc003lju.1, uc011das.1_5end |
EntrezGene: | PCDHGA5 |
HGNC: | 8703 |
UniProt: | Q9Y5G8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 4.86e-20 | 6 |
chondrocyte | 4.86e-20 | 6 |
GAG secreting cell | 1.02e-13 | 9 |
carbohydrate secreting cell | 1.02e-13 | 9 |
extracellular matrix secreting cell | 1.27e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 6.73e-11 | 3 |
skeletal tissue | 6.73e-11 | 3 |
parietal lobe | 6.77e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 7.48e-30 | 1 |
extraosseous chondrosarcoma | 7.48e-30 | 1 |
myxoid chondrosarcoma | 7.48e-30 | 1 |
extraskeletal myxoid chondrosarcoma | 7.48e-30 | 1 |