FFCP PHASE1:Hg19::chr22:45809495..45809506,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27127 | |EntrezGene=27127 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11112 | |HGNC=11112 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NDV3 | |UniProt=Q8NDV3 | ||
|association_with_transcript=0bp_to_ENST00000404354,NM_148674,uc003bgc.2,uc003bgd.2_5end | |association_with_transcript=0bp_to_ENST00000404354,NM_148674,uc003bgc.2,uc003bgd.2_5end | ||
|cluster_id=chr22:45809495..45809506,- | |||
|coexpression_cluster_id=C2648 | |coexpression_cluster_id=C2648 | ||
|description=CAGE_peak_2_at_SMC1B_5end | |description=CAGE_peak_2_at_SMC1B_5end | ||
|id=chr22:45809495..45809506,- | |id=chr22:45809495..45809506,- | ||
|ontology_enrichment_celltype=CL:0002535;3.57e-27;2!CL:0002032;1.72e-14;1!CL:0000557;1.72e-14;1!CL:1000415;6.80e-08;2 | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019=CL:0002535;3.57e-27;2!CL:0002032;1.72e-14;1!CL:0000557;1.72e-14;1!CL:1000415;6.80e-08;2 | ||
|ontology_enrichment_disease=DOID:4362;1.76e-11;5!DOID:4929;6.80e-08;2 | |ontology_enrichment_celltype_v019_2=CL:0002535,3.58e-27,2;CL:1000415,8.04e-08,2 | ||
|ontology_enrichment_uberon=UBERON:0006955;3.57e-27;2!UBERON:0004801;3.57e-27;2!UBERON:0004913;1.72e-14;1!UBERON:0003703;1.72e-14;1!UBERON:0001174;1.72e-14;1!UBERON:0004914;1.72e-14;1!UBERON:0000002;1.01e-09;6!UBERON:0001560;1.01e-09;6!UBERON:0002294;1.85e-08;7!UBERON:0001173;1.85e-08;7!UBERON:0000473;9.23e-08;8 | |ontology_enrichment_development_v019=UBERON:0008425;7.63e-15;1 | ||
|ontology_enrichment_disease=DOID:14566!9.95e-17!239;DOID:305!1.90e-16!106;DOID:162!1.17e-15!235;DOID:0050687!5.94e-14!143;DOID:0050686!6.01e-10!137;DOID:4362!4.88e-08!5;DOID:299!7.52e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:4362;1.76e-11;5!DOID:4929;6.80e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,1.76e-11,5;DOID:305,3.99e-09,106;DOID:4929,7.52e-08,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0006955;3.57e-27;2!UBERON:0004801;3.57e-27;2!UBERON:0004913;1.72e-14;1!UBERON:0003703;1.72e-14;1!UBERON:0001174;1.72e-14;1!UBERON:0004914;1.72e-14;1!UBERON:0000002;1.01e-09;6!UBERON:0001560;1.01e-09;6!UBERON:0002294;1.85e-08;7!UBERON:0001173;1.85e-08;7!UBERON:0000473;9.23e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,3.58e-27,2;UBERON:0004801,3.58e-27,2;UBERON:0004913,2.11e-14,1;UBERON:0003703,2.11e-14,1;UBERON:0001174,2.11e-14,1;UBERON:0004914,2.11e-14,1;UBERON:0000002,1.01e-09,6;UBERON:0001560,1.01e-09,6;UBERON:0000473,9.08e-08,8 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63723844372141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0.910161361938026,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0.142283686696828,0.478278818186467,0,0,0,0,0,0,0,0,0.338583555603207,0,0,2.98092366383228,0,0.614481528616916,0.671028323677248,0.333698283423817,0,0,0,0,0,0,1.30998378285754,0,1.09224469574562,0,0,0,0.890894042497916,0,0,0,0,0.659215496907038,0,0,0,1.76352923497993,0,0,0,0,0,0,0,0,0,0,0,0,0.7812832832557,2.27395999990109,0,0.227586896570999,0.762760950878299,0.945550727071745,0,0,0,0,0,0,0,0,0.219385397153973,0,0.41827123283581,0,0,0,0,0.325942115766024,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0.326465616318295,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,1.13176968554523,0,0,0,0,0,0,0,0,0,0.397429223405979,0,1.17330829640882,0,0,0.19980960958213,0,0,0.343189995723929,0,0.248505071130865,0,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0.243585196761792,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0.734210113519403,0,0,0,0.176689145945881,0,0,0,0,0.607719912354764,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18284868973636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0.0657727735628491,0.118193840883968,0,0,0,0.280272163313789,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0.236664001461131,0.340853619036631,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0.935757853848423,0,0.237840181555137,0,0,1.96251696636676,0.0771741581079447,0,0.470317296361523,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0.26721740526556,0,0.752122617877125,3.94049230734845,4.82335434281121,0,0,0,0,0.0645889098360061,0.0620747142958579,0.112131862580613,0.0636471582781649,0,0,0,0,0,0,0.0814032686109745,3.52200241396461,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p2@SMC1B | |short_description=p2@SMC1B | ||
}} | }} |
Latest revision as of 04:01, 25 September 2015
Short description: | p2@SMC1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMC1B_5end |
Coexpression cluster: | C2648_transitionalcell_acute_testis_small_breast_argyrophil_epidermoid |
Association with transcript: | 0bp_to_ENST00000404354, NM_148674, uc003bgc.2, uc003bgd.2_5end |
EntrezGene: | SMC1B |
HGNC: | 11112 |
UniProt: | Q8NDV3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 3.58e-27 | 2 |
epithelial cell of gall bladder | 8.04e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 3.58e-27 | 2 |
cervix epithelium | 3.58e-27 | 2 |
hepatopancreatic ampulla | 2.11e-14 | 1 |
extrahepatic bile duct | 2.11e-14 | 1 |
common bile duct | 2.11e-14 | 1 |
duodenal papilla | 2.11e-14 | 1 |
uterine cervix | 1.01e-09 | 6 |
neck of organ | 1.01e-09 | 6 |
testis | 9.08e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 1.76e-11 | 5 |
carcinoma | 3.99e-09 | 106 |
tubular adenocarcinoma | 7.52e-08 | 2 |