FFCP PHASE1:Hg19::chr19:10946872..10946894,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11018 | |EntrezGene=11018 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17291 | |HGNC=17291 | ||
|TSSclassifier=strong | |||
|UniProt=Q13445 | |UniProt=Q13445 | ||
|association_with_transcript=88bp_to_ENST00000214869,NM_006858,uc002mpy.2_5end | |association_with_transcript=88bp_to_ENST00000214869,NM_006858,uc002mpy.2_5end | ||
|cluster_id=chr19:10946872..10946894,- | |||
|coexpression_cluster_id=C887 | |coexpression_cluster_id=C887 | ||
|description=CAGE_peak_1_at_TMED1_5end | |description=CAGE_peak_1_at_TMED1_5end | ||
|id=chr19:10946872..10946894,- | |id=chr19:10946872..10946894,- | ||
|ontology_enrichment_celltype=CL:0000359;3.07e-14;32!CL:0000192;1.82e-13;43!CL:0000134;6.41e-10;55!CL:0000187;9.85e-10;55!CL:0000723;1.10e-08;61!CL:0000393;2.36e-08;61!CL:0000211;2.36e-08;61!CL:0000048;2.86e-08;58!CL:0000349;3.81e-07;19!CL:0000034;4.79e-07;69 | |ontology_enrichment_celltype=CL:0000055!5.30e-23!180;CL:0000012!2.78e-22!682;CL:0000222!2.81e-22!119;CL:0000548!3.30e-22!679;CL:0000004!3.30e-22!679;CL:0000255!3.30e-22!679;CL:0000183!6.72e-21!59;CL:0002321!4.81e-20!248;CL:0000220!1.89e-19!246;CL:0000192!1.89e-18!42;CL:0000514!1.89e-18!42;CL:0000187!3.24e-18!54;CL:0000680!6.11e-18!57;CL:0000056!6.11e-18!57;CL:0000355!6.11e-18!57;CL:0000144!1.43e-16!625;CL:0000393!1.22e-15!60;CL:0000211!1.22e-15!60;CL:0000359!6.20e-15!32;CL:0002371!2.76e-14!591;CL:0000066!9.84e-11!254;CL:0000003!2.18e-09!722;CL:0002078!6.36e-08!44;CL:0000115!3.38e-07!35 | ||
| | |ontology_enrichment_celltype_v019=CL:0000359;3.07e-14;32!CL:0000192;1.82e-13;43!CL:0000134;6.41e-10;55!CL:0000187;9.85e-10;55!CL:0000723;1.10e-08;61!CL:0000393;2.36e-08;61!CL:0000211;2.36e-08;61!CL:0000048;2.86e-08;58!CL:0000349;3.81e-07;19!CL:0000034;4.79e-07;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.19e-22,121;CL:0002321,1.98e-20,250;CL:0000192,1.90e-18,43;CL:0000514,1.90e-18,43;CL:0000187,2.93e-18,55;CL:0000680,5.40e-18,58;CL:0000056,5.40e-18,58;CL:0000355,5.40e-18,58;CL:0000393,1.04e-15,61;CL:0000211,1.04e-15,61;CL:0000359,6.19e-15,32;CL:0000066,1.26e-10,253;CL:0002078,3.80e-08,45;CL:0000115,2.01e-07,36;CL:0000349,3.86e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000514;1.82e-13;43!CL:0000355;1.48e-09;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0004573;8.93e-12;33!UBERON:0004571;8.93e-12;33!UBERON:0001637;1.14e-11;42!UBERON:0003509;1.14e-11;42!UBERON:0004572;1.14e-11;42!UBERON:0003914;7.91e-10;74!UBERON:0007500;1.31e-09;56!UBERON:0001981;1.31e-09;56!UBERON:0004537;1.31e-09;56!UBERON:0002049;7.63e-09;75!UBERON:0007798;7.63e-09;75!UBERON:0000055;1.19e-08;65!UBERON:0000947;5.04e-07;21!UBERON:0010191;5.04e-07;21 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!5.96e-25!118;UBERON:0005256!2.85e-23!143;UBERON:0002049!2.68e-20!79;UBERON:0007798!2.68e-20!79;UBERON:0004872!4.74e-20!84;UBERON:0000490!5.38e-20!138;UBERON:0000486!2.55e-18!82;UBERON:0004290!1.49e-17!70;UBERON:0000914!1.62e-17!83;UBERON:0002329!1.62e-17!83;UBERON:0003077!1.62e-17!83;UBERON:0003059!1.62e-17!83;UBERON:0007282!1.62e-17!83;UBERON:0009618!1.62e-17!83;UBERON:0007285!1.62e-17!83;UBERON:0002100!1.64e-17!216;UBERON:0003104!1.74e-17!238;UBERON:0009142!1.74e-17!238;UBERON:0001134!2.39e-17!61;UBERON:0002036!2.39e-17!61;UBERON:0003082!2.39e-17!61;UBERON:0000055!1.06e-16!69;UBERON:0001981!5.39e-16!60;UBERON:0007500!5.39e-16!60;UBERON:0004537!5.39e-16!60;UBERON:0006965!5.39e-16!60;UBERON:0002385!1.13e-15!63;UBERON:0001015!1.13e-15!63;UBERON:0000383!1.13e-15!63;UBERON:0001637!1.65e-15!42;UBERON:0003509!1.65e-15!42;UBERON:0004572!1.65e-15!42;UBERON:0001009!3.78e-14!113;UBERON:0004535!1.64e-13!110;UBERON:0004573!1.35e-12!33;UBERON:0004571!1.35e-12!33;UBERON:0000926!4.31e-12!448;UBERON:0004120!4.31e-12!448;UBERON:0006603!4.31e-12!448;UBERON:0000481!2.35e-11!347;UBERON:0000119!8.52e-10!312;UBERON:0000483!9.01e-10!309;UBERON:0003103!4.48e-09!69;UBERON:0000468!9.42e-09!659;UBERON:0000477!3.86e-08!286;UBERON:0009569!1.10e-07!113;UBERON:0000475!3.46e-07!365;UBERON:0000947!7.23e-07!21;UBERON:0010191!7.23e-07!21;UBERON:0002417!8.79e-07!61;UBERON:0000916!8.79e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;8.93e-12;33!UBERON:0004571;8.93e-12;33!UBERON:0001637;1.14e-11;42!UBERON:0003509;1.14e-11;42!UBERON:0004572;1.14e-11;42!UBERON:0003914;7.91e-10;74!UBERON:0007500;1.31e-09;56!UBERON:0001981;1.31e-09;56!UBERON:0004537;1.31e-09;56!UBERON:0002049;7.63e-09;75!UBERON:0007798;7.63e-09;75!UBERON:0000055;1.19e-08;65!UBERON:0000947;5.04e-07;21!UBERON:0010191;5.04e-07;21 | |||
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| ||
|short_description=p1@TMED1 | |short_description=p1@TMED1 | ||
}} | }} |
Latest revision as of 03:13, 25 September 2015
Short description: | p1@TMED1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMED1_5end |
Coexpression cluster: | C887_Mesenchymal_Alveolar_Smooth_Renal_Fibroblast_leiomyoma_Preadipocyte |
Association with transcript: | 88bp_to_ENST00000214869, NM_006858, uc002mpy.2_5end |
EntrezGene: | TMED1 |
HGNC: | 17291 |
UniProt: | Q13445 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.19e-22 | 121 |
embryonic cell | 1.98e-20 | 250 |
smooth muscle cell | 1.90e-18 | 43 |
smooth muscle myoblast | 1.90e-18 | 43 |
muscle cell | 2.93e-18 | 55 |
muscle precursor cell | 5.40e-18 | 58 |
myoblast | 5.40e-18 | 58 |
multi-potent skeletal muscle stem cell | 5.40e-18 | 58 |
electrically responsive cell | 1.04e-15 | 61 |
electrically active cell | 1.04e-15 | 61 |
vascular associated smooth muscle cell | 6.19e-15 | 32 |
epithelial cell | 1.26e-10 | 253 |
meso-epithelial cell | 3.80e-08 | 45 |
endothelial cell | 2.01e-07 | 36 |
extraembryonic cell | 3.86e-07 | 19 |