FFCP PHASE1:Hg19::chr9:127358120..127358170,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2649 | |EntrezGene=2649 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7985 | |HGNC=7985 | ||
|TSSclassifier=strong | |||
|UniProt=C9JDI9 | |UniProt=C9JDI9 | ||
|association_with_transcript=-33bp_to_ENST00000475178_5end | |association_with_transcript=-33bp_to_ENST00000475178_5end | ||
|cluster_id=chr9:127358120..127358170,- | |||
|coexpression_cluster_id=C83 | |coexpression_cluster_id=C83 | ||
|description=CAGE_peak_3_at_NR6A1_5end | |description=CAGE_peak_3_at_NR6A1_5end | ||
|id=chr9:127358120..127358170,- | |id=chr9:127358120..127358170,- | ||
|ontology_enrichment_celltype=CL:0000148!3.20e-16!10;CL:0000541!3.20e-16!10;CL:0002322!9.59e-15!5;CL:0000039!1.71e-14!7;CL:0000586!1.71e-14!7;CL:0000147!3.76e-11!14;CL:0000181!2.84e-10!12;CL:0000417!2.84e-10!12;CL:0000668!2.84e-10!12;CL:0000414!2.84e-10!12;CL:0000412!2.84e-10!12;CL:0000182!2.84e-10!12;CL:0002541!3.75e-09!3;CL:0000710!2.30e-07!20 | |ontology_enrichment_celltype=CL:0000148!3.20e-16!10;CL:0000541!3.20e-16!10;CL:0002322!9.59e-15!5;CL:0000039!1.71e-14!7;CL:0000586!1.71e-14!7;CL:0000147!3.76e-11!14;CL:0000181!2.84e-10!12;CL:0000417!2.84e-10!12;CL:0000668!2.84e-10!12;CL:0000414!2.84e-10!12;CL:0000412!2.84e-10!12;CL:0000182!2.84e-10!12;CL:0002541!3.75e-09!3;CL:0000710!2.30e-07!20 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.34e-25;5!CL:0000039;1.88e-18;7!CL:0000586;1.88e-18;7!CL:0000148;3.43e-17;10!CL:0000147;4.07e-12;14!CL:0000182;4.72e-10;12!CL:0002321;2.35e-08;15!CL:0000710;2.65e-08;20!CL:0002541;7.26e-08;3!CL:0000540;9.75e-08;6!CL:0000404;9.75e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.27e-25,5;CL:0000039,1.92e-18,7;CL:0000586,1.92e-18,7;CL:0000148,2.53e-17,10;CL:0000541,2.53e-17,10;CL:0000147,3.30e-12,14;CL:0000182,4.96e-10,12;CL:0000710,2.30e-08,20;CL:0002541,7.64e-08,3;CL:0000540,1.06e-07,6;CL:0000031,1.06e-07,6;CL:0000404,1.06e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.87e-11;11!UBERON:0009497;2.20e-09;13!CL:0000031;9.75e-08;6 | |||
|ontology_enrichment_disease=DOID:3095!8.92e-09!22;DOID:2994!8.92e-09!22 | |ontology_enrichment_disease=DOID:3095!8.92e-09!22;DOID:2994!8.92e-09!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;1.25e-10;22!DOID:2994;1.25e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.25e-10,22;DOID:2994,1.25e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0002107!3.44e-12!19;UBERON:0006925!3.44e-12!19;UBERON:0008836!3.44e-12!19;UBERON:0008835!3.12e-10!22;UBERON:0003894!3.12e-10!22;UBERON:0005057!5.56e-10!26;UBERON:0009854!1.07e-09!23;UBERON:0000476!3.75e-09!3;UBERON:0000920!3.75e-09!3;UBERON:0007499!9.44e-09!25;UBERON:0009497!9.44e-09!25;UBERON:0000015!9.44e-09!25;UBERON:0002423!9.44e-09!25;UBERON:0006235!9.44e-09!25;UBERON:0004161!9.44e-09!25;UBERON:0009856!2.46e-08!26 | |ontology_enrichment_uberon=UBERON:0002107!3.44e-12!19;UBERON:0006925!3.44e-12!19;UBERON:0008836!3.44e-12!19;UBERON:0008835!3.12e-10!22;UBERON:0003894!3.12e-10!22;UBERON:0005057!5.56e-10!26;UBERON:0009854!1.07e-09!23;UBERON:0000476!3.75e-09!3;UBERON:0000920!3.75e-09!3;UBERON:0007499!9.44e-09!25;UBERON:0009497!9.44e-09!25;UBERON:0000015!9.44e-09!25;UBERON:0002423!9.44e-09!25;UBERON:0006235!9.44e-09!25;UBERON:0004161!9.44e-09!25;UBERON:0009856!2.46e-08!26 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;8.68e-09;19!UBERON:0006925;8.68e-09;19!UBERON:0003124;7.26e-08;3!UBERON:0000920;7.26e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,8.81e-09,19;UBERON:0006925,8.81e-09,19;UBERON:0008836,8.81e-09,19;UBERON:0000920,7.64e-08,3;UBERON:0008835,1.68e-07,22;UBERON:0003894,1.68e-07,22;UBERON:0009854,3.77e-07,23;UBERON:0003124,4.28e-07,7 | |||
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| ||
|short_description=p3@NR6A1 | |short_description=p3@NR6A1 | ||
}} | }} |
Latest revision as of 00:58, 25 September 2015
Short description: | p3@NR6A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NR6A1_5end |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | -33bp_to_ENST00000475178_5end |
EntrezGene: | NR6A1 |
HGNC: | 7985 |
UniProt: | C9JDI9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.27e-25 | 5 |
germ line cell | 1.92e-18 | 7 |
germ cell | 1.92e-18 | 7 |
melanocyte | 2.53e-17 | 10 |
melanoblast | 2.53e-17 | 10 |
pigment cell | 3.30e-12 | 14 |
hepatocyte | 4.96e-10 | 12 |
neurecto-epithelial cell | 2.30e-08 | 20 |
chorionic membrane mesenchymal stem cell | 7.64e-08 | 3 |
neuron | 1.06e-07 | 6 |
neuroblast | 1.06e-07 | 6 |
electrically signaling cell | 1.06e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
liver | 8.81e-09 | 19 |
digestive gland | 8.81e-09 | 19 |
liver bud | 8.81e-09 | 19 |
egg chorion | 7.64e-08 | 3 |
hepatic diverticulum | 1.68e-07 | 22 |
liver primordium | 1.68e-07 | 22 |
digestive tract diverticulum | 3.77e-07 | 23 |
chorion | 4.28e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.25e-10 | 22 |
germ cell cancer | 1.25e-10 | 22 |