FFCP PHASE1:Hg19::chr2:224840525..224840564,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5270 | |EntrezGene=5270 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=8951 | |HGNC=8951 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-143bp_to_AJ293400_5end | |association_with_transcript=-143bp_to_AJ293400_5end | ||
|cluster_id=chr2:224840525..224840564,- | |||
|coexpression_cluster_id=C354 | |||
|description=CAGE_peak_12_at_SERPINE2_5end | |description=CAGE_peak_12_at_SERPINE2_5end | ||
|id=chr2:224840525..224840564,- | |id=chr2:224840525..224840564,- | ||
|ontology_enrichment_celltype=CL:0000055!1.12e-17!180;CL:0000057!7.13e-13!75;CL:0002620!5.78e-08!23 | |ontology_enrichment_celltype=CL:0000055!1.12e-17!180;CL:0000057!7.13e-13!75;CL:0002620!5.78e-08!23 | ||
|ontology_enrichment_celltype_v019=CL:0002579;7.14e-12;3!CL:0002541;1.02e-11;3!CL:0000153;7.11e-10;9!CL:0000447;7.11e-10;9!CL:1000306;8.25e-09;4!CL:0002547;8.25e-09;4!CL:0000499;8.70e-09;28!CL:0000327;4.52e-08;15!CL:0002334;1.41e-07;12!CL:0002617;1.68e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002579,8.43e-12,3;CL:0002541,1.01e-11,3;CL:0000057,1.30e-10,76;CL:0000153,7.01e-10,9;CL:0000447,7.01e-10,9;CL:0000499,8.17e-09,28;CL:1000306,1.10e-08,4;CL:0002547,1.10e-08,4;CL:0000327,4.19e-08,15;CL:0002334,1.48e-07,12;CL:0002617,1.52e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;2.43e-11;3!DOID:127;2.43e-11;3!DOID:0060072;1.32e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.66e-11,3;DOID:127,1.66e-11,3;DOID:0060072,9.94e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0002097!2.46e-07!40 | |ontology_enrichment_uberon=UBERON:0002097!2.46e-07!40 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;8.73e-14;9!UBERON:0000042;8.73e-14;9!UBERON:0003124;1.02e-11;3!UBERON:0000920;1.02e-11;3!UBERON:0003688;7.53e-10;6!UBERON:0002358;7.53e-10;6!UBERON:0003684;7.53e-10;6!UBERON:0001178;7.53e-10;6!UBERON:0004797;8.25e-09;4!UBERON:0000415;8.25e-09;4!UBERON:0007240;8.25e-09;4!UBERON:0005742;8.25e-09;4!UBERON:0005734;8.25e-09;4!UBERON:0004664;8.25e-09;4!UBERON:0004663;8.25e-09;4!UBERON:0005406;1.24e-08;2!UBERON:0005631;1.38e-08;10!UBERON:0000158;1.38e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,1.01e-11,3;UBERON:0004457,3.56e-10,12;UBERON:0000042,3.56e-10,12;UBERON:0003688,7.39e-10,6;UBERON:0002358,7.39e-10,6;UBERON:0003684,7.39e-10,6;UBERON:0001178,7.39e-10,6;UBERON:0000415,1.10e-08,4;UBERON:0007240,1.10e-08,4;UBERON:0005742,1.10e-08,4;UBERON:0005734,1.10e-08,4;UBERON:0004664,1.10e-08,4;UBERON:0004663,1.10e-08,4;UBERON:0005406,1.15e-08,2;UBERON:0004923,1.88e-08,66 | |||
|phase1_expression=1.81678379270557,1.07050261945492,0.845726424575827,0,1.34088328328186,6.97870819280295,0,0,0,0.245733936501509,0,0,0,0,0.331397375727916,0.672325146451775,0,0,0,0,0.204000691244253,0.313454721478088,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,2.53007406669196,0.50133791063589,0.869079113764942,3.9764297352555,7.29952305453954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.9515512271251,2.02608818663328,0.926864265692532,6.02356903572509,2.12801029319014,0,1.06748995729705,0.24666754841716,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0.149448680551801,0.117434498643765,0.161872944368132,0,0,0.122834317311768,0.206651562351531,1.18800285728205,0.741800787835671,0,0,0,0.125118519871964,0,0.438977620880838,0.612975591598039,1.05166641234618,0.113432183160021,0.717558542755448,1.70845911054854,0.635795703478686,0.900273288253207,0.824420233907511,0.515281080091258,1.48893485065272,1.35021065793013,0.584622030967192,0,0.920498986422993,0.323292113637624,3.19508633264953,0.705264687593482,0.169560592310488,0.193260853163297,0.818238361772504,0.286804595389004,0,0.132529768321485,0.232387885739037,0,0,0,0,0.643240938192885,0,0.464367928031979,0,0.236613600079688,0,0,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.329250856225877,0,0.201057944823262,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0.088048434013226,0,0,0,0.063497894292169,0.381988425558278,1.17217447210047,0,1.33675740514321,0.901029173531752,0.571652865261156,0.224262168690721,0,0.07333828582095,0.775630294546667,0,0,1.06375246633948,0,0,0,0,0,0,0,0,0,0,0.904318131178758,0,0,0,0,0,0,0,0,2.60606352001643,2.26023954805422,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0.207970861530807,0.356857977594324,0.157702415033935,1.17141414992713,0.300946099727719,4.5481500811197,0,1.32845119707087,0,1.30325421702124,0,0,0,0,0,0,0,0.30239029332968,5.70647957983187,0.767309866440312,0.561320188866147,4.61300937320523,2.04682899626681,8.20354997832398,5.93672265779964,0,0.177561725313127,0.0821271560138091,0,0,0,2.20557117333613,0.184161977871793,0.229628896329213,0.364182336013434,0.524497659837696,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0.328014645699706,0,0.103041011647722,0.0915694648183434,0.082509499920588,0,0.650060246036521,1.6068392984416,0,0,0.307007349452259,0,0,0,0.0852266274161009,0,0.330569830721956,0.384380134730212,0.382838137483752,0.4046311234222,0,4.7221852024596,0,0.308033580176089,1.06461206063404,0.869932992075073,0,0.143124886741991,0,0,0,0,0,0,0.78494864019923,0,0.54907405947211,0.353437207037059,0.404364963146632,0,0,0,1.46228093778771,0,0,0.565621727814851,1.13008116620243,1.10273068709225,0,2.63070531152258,0.578775534266688,0,0,0.30982349809975,0,0,0,0.35667105148125,0,4.01104507065562,1.31717957183961,0,0,0.288666338176536,0.670302275535787,0,0.0941438007767792,0.86101074534246,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,1.43246690842614,0.296964680832639,0,0,0,0.333926115068718,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.371072392647405,0,0,0,0,0.1137934482855,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0.0769502585037971,0.341826167541004,0,0,0,7.33702667383415,1.28236630762607,16.5240780565777,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0.31593289814244,0,0,0,0,0.941798755221676,1.19472429772959,0,0.138674673013139,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0.19871461170299,0,0,0,0.213452994739353,0,0,0,0,0.14405479798815,0,0,0.407712618220842,0,0,0,0,0.136905378891993,0,0.429765441419957,0,0.558564802544508,0,0.717873024576814,0,0,0,0.0671834724867263,2.88239906833923,0,0.157566364614447,0,0,0,0,0,0.408610218334727,0.643012593860077,0,0,0,0,0.0607495566580247,0,0.236417121897595,0,0,1.07572403599707,0.383830394638891,0,0,0,2.71499800876856,2.5926644736038,2.93928624098468,0,0,0.511164065356265,0.113312091520126,0,0,0.129282956361551,0.13223260174269,0,0,0,0.314408610199332,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0.488105059607853,0.1251909307065,0,0.221858103073705,0.0620964029413835,0,0,0.758245587708239,0.856396000634902,0,0,0,0,0,0,0.568209015825267,0.754703705257725,0,0.686520205190771,0.151230923763239,0.777186002913902,0.73927574994817,0.477890301491107,0.449803112163605,0.155262956876259,3.31764966272684,0.797525143673985,0,0.150257608997218,0,0.406870733204662,0.363697318405119,0.107410557042488,0.464033759878494,0.398095888698616,0,0.343395705182793,0.336749488765919,0,0,0,0.260994291965212,0.226705925512272,0,0,0.179088841081487,0.617602894321944,0,0,0.192914038270915,0,0.256241518587947,0,0.303859956177382,0.138258436151731,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0.567515953566836,0,0,1.86623178009892,0,0,0.157265941855896,0,0.169732529954025,0,0.123935764259002,0,0.954013051960256,0,0,0,0,0,0,0,0.615349092722265,0,0,0,0,0,0,0,0,0.762764190934334,0.690359926060101,0,0.150420656698515,0.20170506870352,0,0,0.655087670040387,0,0.0675375846183947,0,0.413373593002368,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0.79832133146375,0,0.685952037749674,0.0679697329768317,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0.173858272302579,0,0.207216164163037,0.17071847709395,0,0,0.354996002191696,0.340853619036631,0,0,0.62041277132864,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0.4226557275834,1.18948980281472,0,0.0644578879735772,0,0,0,0.0802413666891683,0,0,0.143339583151451,0,0.203974470572744,0.436350690340377,0,5.57992527250127,6.93263442947127,0.865253124247578,0,0,0,0.101988829741982,0,0,0,0,0.267964130156178,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0.0717222053926763,0.332660356546013,0.0814032686109745,0.106727345877715,0,0.808426818959282,0,0,0,0,0,0 | |phase1_expression=1.81678379270557,1.07050261945492,0.845726424575827,0,1.34088328328186,6.97870819280295,0,0,0,0.245733936501509,0,0,0,0,0.331397375727916,0.672325146451775,0,0,0,0,0.204000691244253,0.313454721478088,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,2.53007406669196,0.50133791063589,0.869079113764942,3.9764297352555,7.29952305453954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.9515512271251,2.02608818663328,0.926864265692532,6.02356903572509,2.12801029319014,0,1.06748995729705,0.24666754841716,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0.149448680551801,0.117434498643765,0.161872944368132,0,0,0.122834317311768,0.206651562351531,1.18800285728205,0.741800787835671,0,0,0,0.125118519871964,0,0.438977620880838,0.612975591598039,1.05166641234618,0.113432183160021,0.717558542755448,1.70845911054854,0.635795703478686,0.900273288253207,0.824420233907511,0.515281080091258,1.48893485065272,1.35021065793013,0.584622030967192,0,0.920498986422993,0.323292113637624,3.19508633264953,0.705264687593482,0.169560592310488,0.193260853163297,0.818238361772504,0.286804595389004,0,0.132529768321485,0.232387885739037,0,0,0,0,0.643240938192885,0,0.464367928031979,0,0.236613600079688,0,0,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.329250856225877,0,0.201057944823262,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0.088048434013226,0,0,0,0.063497894292169,0.381988425558278,1.17217447210047,0,1.33675740514321,0.901029173531752,0.571652865261156,0.224262168690721,0,0.07333828582095,0.775630294546667,0,0,1.06375246633948,0,0,0,0,0,0,0,0,0,0,0.904318131178758,0,0,0,0,0,0,0,0,2.60606352001643,2.26023954805422,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0.207970861530807,0.356857977594324,0.157702415033935,1.17141414992713,0.300946099727719,4.5481500811197,0,1.32845119707087,0,1.30325421702124,0,0,0,0,0,0,0,0.30239029332968,5.70647957983187,0.767309866440312,0.561320188866147,4.61300937320523,2.04682899626681,8.20354997832398,5.93672265779964,0,0.177561725313127,0.0821271560138091,0,0,0,2.20557117333613,0.184161977871793,0.229628896329213,0.364182336013434,0.524497659837696,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0.328014645699706,0,0.103041011647722,0.0915694648183434,0.082509499920588,0,0.650060246036521,1.6068392984416,0,0,0.307007349452259,0,0,0,0.0852266274161009,0,0.330569830721956,0.384380134730212,0.382838137483752,0.4046311234222,0,4.7221852024596,0,0.308033580176089,1.06461206063404,0.869932992075073,0,0.143124886741991,0,0,0,0,0,0,0.78494864019923,0,0.54907405947211,0.353437207037059,0.404364963146632,0,0,0,1.46228093778771,0,0,0.565621727814851,1.13008116620243,1.10273068709225,0,2.63070531152258,0.578775534266688,0,0,0.30982349809975,0,0,0,0.35667105148125,0,4.01104507065562,1.31717957183961,0,0,0.288666338176536,0.670302275535787,0,0.0941438007767792,0.86101074534246,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,1.43246690842614,0.296964680832639,0,0,0,0.333926115068718,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.371072392647405,0,0,0,0,0.1137934482855,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0.0769502585037971,0.341826167541004,0,0,0,7.33702667383415,1.28236630762607,16.5240780565777,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0.31593289814244,0,0,0,0,0.941798755221676,1.19472429772959,0,0.138674673013139,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0.19871461170299,0,0,0,0.213452994739353,0,0,0,0,0.14405479798815,0,0,0.407712618220842,0,0,0,0,0.136905378891993,0,0.429765441419957,0,0.558564802544508,0,0.717873024576814,0,0,0,0.0671834724867263,2.88239906833923,0,0.157566364614447,0,0,0,0,0,0.408610218334727,0.643012593860077,0,0,0,0,0.0607495566580247,0,0.236417121897595,0,0,1.07572403599707,0.383830394638891,0,0,0,2.71499800876856,2.5926644736038,2.93928624098468,0,0,0.511164065356265,0.113312091520126,0,0,0.129282956361551,0.13223260174269,0,0,0,0.314408610199332,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0.488105059607853,0.1251909307065,0,0.221858103073705,0.0620964029413835,0,0,0.758245587708239,0.856396000634902,0,0,0,0,0,0,0.568209015825267,0.754703705257725,0,0.686520205190771,0.151230923763239,0.777186002913902,0.73927574994817,0.477890301491107,0.449803112163605,0.155262956876259,3.31764966272684,0.797525143673985,0,0.150257608997218,0,0.406870733204662,0.363697318405119,0.107410557042488,0.464033759878494,0.398095888698616,0,0.343395705182793,0.336749488765919,0,0,0,0.260994291965212,0.226705925512272,0,0,0.179088841081487,0.617602894321944,0,0,0.192914038270915,0,0.256241518587947,0,0.303859956177382,0.138258436151731,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0.567515953566836,0,0,1.86623178009892,0,0,0.157265941855896,0,0.169732529954025,0,0.123935764259002,0,0.954013051960256,0,0,0,0,0,0,0,0.615349092722265,0,0,0,0,0,0,0,0,0.762764190934334,0.690359926060101,0,0.150420656698515,0.20170506870352,0,0,0.655087670040387,0,0.0675375846183947,0,0.413373593002368,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0.79832133146375,0,0.685952037749674,0.0679697329768317,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0.173858272302579,0,0.207216164163037,0.17071847709395,0,0,0.354996002191696,0.340853619036631,0,0,0.62041277132864,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0.4226557275834,1.18948980281472,0,0.0644578879735772,0,0,0,0.0802413666891683,0,0,0.143339583151451,0,0.203974470572744,0.436350690340377,0,5.57992527250127,6.93263442947127,0.865253124247578,0,0,0,0.101988829741982,0,0,0,0,0.267964130156178,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0.0717222053926763,0.332660356546013,0.0814032686109745,0.106727345877715,0,0.808426818959282,0,0,0,0,0,0 | ||
|short_description=p12@SERPINE2 | |short_description=p12@SERPINE2 | ||
}} | }} |
Latest revision as of 00:45, 25 September 2015
Short description: | p12@SERPINE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_SERPINE2_5end |
Coexpression cluster: | C354_Fibroblast_Preadipocyte_Chondrocyte_chorionic_tenocyte_Synoviocyte_Smooth |
Association with transcript: | -143bp_to_AJ293400_5end |
EntrezGene: | SERPINE2 |
HGNC: | 8951 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
omentum preadipocyte | 8.43e-12 | 3 |
chorionic membrane mesenchymal stem cell | 1.01e-11 | 3 |
fibroblast | 1.30e-10 | 76 |
GAG secreting cell | 7.01e-10 | 9 |
carbohydrate secreting cell | 7.01e-10 | 9 |
stromal cell | 8.17e-09 | 28 |
fibroblast of tunica adventitia of artery | 1.10e-08 | 4 |
fibroblast of the aortic adventitia | 1.10e-08 | 4 |
extracellular matrix secreting cell | 4.19e-08 | 15 |
preadipocyte | 1.48e-07 | 12 |
adipocyte of breast | 1.52e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 1.01e-11 | 3 |
cavity lining | 3.56e-10 | 12 |
serous membrane | 3.56e-10 | 12 |
omentum | 7.39e-10 | 6 |
peritoneum | 7.39e-10 | 6 |
abdominal cavity | 7.39e-10 | 6 |
visceral peritoneum | 7.39e-10 | 6 |
artery wall | 1.10e-08 | 4 |
tunica adventitia of artery | 1.10e-08 | 4 |
adventitia | 1.10e-08 | 4 |
tunica adventitia of blood vessel | 1.10e-08 | 4 |
aorta tunica adventitia | 1.10e-08 | 4 |
aorta wall | 1.10e-08 | 4 |
perirenal fat | 1.15e-08 | 2 |
organ component layer | 1.88e-08 | 66 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.66e-11 | 3 |
leiomyoma | 1.66e-11 | 3 |
benign neoplasm | 9.94e-09 | 4 |