FFCP PHASE1:Hg19::chr12:80084303..80084332,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:80084303..80084332,- to FFCP PHASE1:Hg19::chr12:80084303..80084332,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5074 | |EntrezGene=5074 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8614 | |HGNC=8614 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-443bp_to_ENST00000551712_5end | |||
|cluster_id=chr12:80084303..80084332,- | |||
|coexpression_cluster_id=C1688 | |||
|description=CAGE_peak_1_at_PAWR_5end | |||
|id=chr12:80084303..80084332,- | |||
|ontology_enrichment_celltype=CL:0000066!9.23e-42!254;CL:0000076!1.04e-14!62;CL:0002321!1.74e-14!248;CL:0000220!7.57e-14!246;CL:0000077!1.63e-09!19;CL:0000223!8.08e-09!59;CL:0000213!9.40e-09!57;CL:0000215!9.40e-09!57;CL:0002076!2.35e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000077;1.21e-09;19!CL:0000076;4.46e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.47e-42,253;CL:0000076,4.14e-14,63;CL:0002321,6.27e-14,250;CL:0000077,1.31e-09,19;CL:0000223,2.04e-09,58;CL:0000213,6.88e-09,58;CL:0000215,6.88e-09,58;CL:0002076,5.69e-08,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!8.58e-16!106;DOID:0050687!2.23e-15!143;DOID:162!9.24e-09!235;DOID:14566!4.20e-08!239;DOID:7!7.26e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.85e-16,106;DOID:0050687,2.14e-15,143;DOID:162,3.12e-09,235;DOID:14566,1.51e-08,239;DOID:7,6.26e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0000466!4.75e-15!126;UBERON:0009569!2.33e-14!113;UBERON:0004119!8.39e-14!169;UBERON:0000925!8.39e-14!169;UBERON:0006595!8.39e-14!169;UBERON:0001007!7.11e-12!155;UBERON:0001555!7.11e-12!155;UBERON:0007026!7.11e-12!155;UBERON:0000464!1.62e-11!104;UBERON:0005177!1.13e-10!107;UBERON:0005911!4.86e-10!82;UBERON:0002417!7.43e-10!61;UBERON:0000916!7.43e-10!61;UBERON:0001048!9.82e-10!168;UBERON:0002100!1.39e-09!216;UBERON:0003886!1.58e-09!63;UBERON:0000077!7.09e-09!130;UBERON:0002553!7.19e-09!70;UBERON:0004921!3.39e-08!129;UBERON:0004185!3.39e-08!129;UBERON:0005172!4.96e-08!55;UBERON:0005173!4.96e-08!55;UBERON:0000475!1.55e-07!365;UBERON:0003929!5.95e-07!54;UBERON:0003104!9.51e-07!238;UBERON:0009142!9.51e-07!238 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009569,1.04e-14,112;UBERON:0004119,2.53e-12,160;UBERON:0000925,2.53e-12,160;UBERON:0006595,2.53e-12,160;UBERON:0005177,3.42e-12,101;UBERON:0001007,7.78e-11,145;UBERON:0001555,7.78e-11,145;UBERON:0007026,7.78e-11,145;UBERON:0002417,2.05e-10,60;UBERON:0000916,2.05e-10,60;UBERON:0005911,3.66e-10,82;UBERON:0002100,2.50e-09,199;UBERON:0005172,1.57e-08,54;UBERON:0005173,1.57e-08,54;UBERON:0001048,1.10e-07,160;UBERON:0003886,1.53e-07,54;UBERON:0003929,4.04e-07,54;UBERON:0004921,4.25e-07,118;UBERON:0002553,6.90e-07,61 | |||
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| ||
|short_description=p1@PAWR | |||
}} | }} |
Latest revision as of 00:34, 25 September 2015
Short description: | p1@PAWR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PAWR_5end |
Coexpression cluster: | C1688_pancreatic_large_testicular_oral_extraskeletal_mesothelioma_small |
Association with transcript: | -443bp_to_ENST00000551712_5end |
EntrezGene: | PAWR |
HGNC: | 8614 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.47e-42 | 253 |
squamous epithelial cell | 4.14e-14 | 63 |
embryonic cell | 6.27e-14 | 250 |
mesothelial cell | 1.31e-09 | 19 |
endodermal cell | 2.04e-09 | 58 |
lining cell | 6.88e-09 | 58 |
barrier cell | 6.88e-09 | 58 |
endo-epithelial cell | 5.69e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
subdivision of trunk | 1.04e-14 | 112 |
endoderm-derived structure | 2.53e-12 | 160 |
endoderm | 2.53e-12 | 160 |
presumptive endoderm | 2.53e-12 | 160 |
trunk region element | 3.42e-12 | 101 |
digestive system | 7.78e-11 | 145 |
digestive tract | 7.78e-11 | 145 |
primitive gut | 7.78e-11 | 145 |
abdominal segment of trunk | 2.05e-10 | 60 |
abdomen | 2.05e-10 | 60 |
endo-epithelium | 3.66e-10 | 82 |
trunk | 2.50e-09 | 199 |
abdomen element | 1.57e-08 | 54 |
abdominal segment element | 1.57e-08 | 54 |
primordium | 1.10e-07 | 160 |
body cavity precursor | 1.53e-07 | 54 |
gut epithelium | 4.04e-07 | 54 |
subdivision of digestive tract | 4.25e-07 | 118 |
anatomical cavity | 6.90e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.85e-16 | 106 |
cell type cancer | 2.14e-15 | 143 |
cancer | 3.12e-09 | 235 |
disease of cellular proliferation | 1.51e-08 | 239 |
disease of anatomical entity | 6.26e-07 | 39 |