FFCP PHASE1:Hg19::chr11:86383446..86383460,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:86383446..86383460,- to FFCP PHASE1:Hg19::chr11:86383446..86383460,-: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10873 | |EntrezGene=10873 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6985 | |HGNC=6985 | ||
|TSSclassifier=strong | |||
|UniProt=E9PKA0 | |UniProt=E9PKA0 | ||
|association_with_transcript=9bp_to_ENST00000532471_5end | |||
|cluster_id=chr11:86383446..86383460,- | |||
|description=CAGE_peak_6_at_ME3_5end | |||
|id=chr11:86383446..86383460,- | |||
|ontology_enrichment_celltype=CL:0000071!7.56e-09!18;CL:0002546!7.56e-09!18;CL:0002139!3.16e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000071;4.61e-11;18!CL:0002139;1.06e-09;24!CL:0000136;1.07e-07;13!CL:0000115;6.50e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000071,4.72e-11,18;CL:0002546,4.72e-11,18;CL:0002139,1.66e-09,24;CL:0000115,1.23e-08,36;CL:0002078,1.90e-07,45 | |||
|ontology_enrichment_development_v019=CL:0002546;4.61e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000477!1.53e-18!286;UBERON:0000025!1.19e-17!194;UBERON:0000119!3.82e-17!312;UBERON:0000483!5.27e-17!309;UBERON:0004111!8.11e-17!241;UBERON:0000467!3.23e-15!625;UBERON:0000480!3.39e-15!626;UBERON:0000468!5.08e-15!659;UBERON:0000481!8.42e-14!347;UBERON:0000922!2.35e-12!612;UBERON:0002050!3.85e-12!605;UBERON:0005423!3.85e-12!605;UBERON:0000923!8.39e-12!604;UBERON:0005291!8.39e-12!604;UBERON:0006598!8.39e-12!604;UBERON:0002532!8.39e-12!604;UBERON:0007023!8.96e-12!115;UBERON:0003075!9.27e-12!86;UBERON:0007284!9.27e-12!86;UBERON:0001049!1.73e-11!57;UBERON:0005068!1.73e-11!57;UBERON:0006241!1.73e-11!57;UBERON:0007135!1.73e-11!57;UBERON:0002616!4.68e-11!59;UBERON:0000062!3.57e-10!511;UBERON:0000064!4.97e-10!219;UBERON:0002346!5.50e-10!90;UBERON:0000956!2.52e-09!25;UBERON:0000203!2.52e-09!25;UBERON:0000475!3.86e-09!365;UBERON:0001986!7.56e-09!18;UBERON:0004638!7.56e-09!18;UBERON:0004852!7.56e-09!18;UBERON:0002020!8.15e-09!34;UBERON:0003528!8.15e-09!34;UBERON:0001869!1.03e-08!32;UBERON:0005743!1.96e-08!86;UBERON:0003080!2.04e-08!42;UBERON:0002619!2.26e-08!22;UBERON:0001893!2.47e-08!34;UBERON:0003056!3.83e-08!61;UBERON:0002791!4.29e-08!33;UBERON:0000955!4.98e-08!69;UBERON:0006238!4.98e-08!69;UBERON:0002780!6.54e-08!41;UBERON:0001890!6.54e-08!41;UBERON:0006240!6.54e-08!41;UBERON:0002049!6.76e-08!79;UBERON:0007798!6.76e-08!79;UBERON:0001950!1.15e-07!20;UBERON:0000073!1.18e-07!94;UBERON:0001016!1.18e-07!94;UBERON:0001017!1.36e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;3.96e-13;25!UBERON:0000203;3.96e-13;25!UBERON:0004638;4.61e-11;18!UBERON:0001986;4.61e-11;18!UBERON:0004852;4.61e-11;18!UBERON:0002619;6.47e-11;22!UBERON:0001950;6.84e-11;20!UBERON:0003528;1.58e-09;34!UBERON:0002020;1.58e-09;34!UBERON:0001869;2.05e-08;32!UBERON:0000487;2.55e-08;22!UBERON:0002791;5.91e-08;32!UBERON:0006914;5.96e-08;25!UBERON:0001893;7.40e-08;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,1.88e-12,25;UBERON:0000203,1.88e-12,25;UBERON:0000025,1.06e-11,192;UBERON:0004638,4.72e-11,18;UBERON:0001986,4.72e-11,18;UBERON:0004852,4.72e-11,18;UBERON:0002619,1.11e-10,22;UBERON:0001950,1.55e-10,20;UBERON:0003528,8.61e-10,34;UBERON:0002020,8.61e-10,34;UBERON:0004111,1.45e-09,240;UBERON:0001049,7.99e-09,56;UBERON:0005068,7.99e-09,56;UBERON:0006241,7.99e-09,56;UBERON:0007135,7.99e-09,56;UBERON:0000073,8.57e-09,53;UBERON:0002616,8.57e-09,53;UBERON:0002791,1.21e-08,32;UBERON:0001869,1.21e-08,32;UBERON:0000487,2.58e-08,22;UBERON:0006914,4.71e-08,25;UBERON:0003075,6.20e-08,82;UBERON:0007284,6.20e-08,82;UBERON:0000483,6.24e-08,306;UBERON:0001893,7.46e-08,34;UBERON:0000119,1.17e-07,309;UBERON:0002346,3.62e-07,86;UBERON:0010371,6.42e-07,104 | |||
|phase1_expression=0.181678379270557,2.99740733447376,0.986680828671798,0,1.78784437770915,2.61701557230111,5.06599756336621,0.631719873426831,1.56711376919903,0.737201809504527,2.09340350391728,0.218441372130172,0.527533956456907,0.74259811776028,1.65698687863958,0,0.602694528023977,0.730310090387373,0.975865597581014,0.861847406537515,0.204000691244253,1.25381888591235,1.14494394852423,1.23186982565596,1.00434111675842,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0.369754010166788,0,0,0.880801318004542,0,0.401088894940283,0,0.223915474239924,0,0.257575567634187,0.145398238779565,0.377875943688809,0.485168122375632,0.697287110717054,1.23350366406548,1.23882548358041,0,0,0.236482229888585,0.689491361473237,0,0,0.376484679085209,0,0.224723484445085,0.306083892370903,0.641858054152187,0,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0,0,0.368277635987565,0.632924774881769,0.211255286311942,0.425208599930087,0,0.22465726229299,0,0.32145117339416,0.570025487482497,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0,0,0,0.267440195783507,0.144824403882799,0,0,0.12786256184353,0,2.00535164254356,0.579386075843295,0,0.486634870302636,0.378139268656271,3.1042115644759,1.58102614247627,0.982343066232845,0,0,0.324547393654683,0.696518949197069,1.19662164466979,0,0,0,0.993812036833525,3.4409383804245,0.694281003215189,1.69592382577203,3.77549492588915,1.10047216776027,1.8809546988313,1.03366703667732,0.35576626268671,0,1.61131726843659,2.28081631715554,1.46437234528902,1.10298924103761,0.81014194788176,1.07159673940896,1.34717623575702,0.450445921933289,3.06633274931766,3.79706263827252,2.5648244150257,0,0,0,1.49091585508596,0.25326102332916,1.19168262731897,2.0078563452417,0.709336764396714,0.560677600142307,0,0.49333509683432,0.622422070799533,0.404132016209064,1.63461903113459,0.302714855289863,0.576175924479999,0.937285727335186,0.936480230490962,0.570471821544449,0.747243402759005,0.23486899728753,0.647491777472526,0.280901613404497,0.61246251376468,0.491337269247072,0.413303124703062,1.18800285728205,0.741800787835671,0.910161361938026,1.43723628363248,0.505008341862199,0.250237039743928,0.554128230968366,1.31693286264251,0.919463387397059,0.45071417671979,0.340296549480063,0.89694817844431,0,0.211931901159562,0.900273288253207,0.103052529238439,0.515281080091258,0.18611685633159,0.168776332241266,0.194874010322397,1.26216887122057,0.276149695926898,0.646584227275248,0.355009592516614,0.10075209822764,0,0.386521706326594,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.310983165046111,0,0,1.56449532329816,1.28648187638577,1.38134921352481,0.464367928031979,1.44375896333917,0.236613600079688,0.168584690078102,0.241011029883482,0.441175890929576,0,0,0.404493924480493,0.196221465125346,0,1.4763109092493,0,0.4115740113314,1.47008711385542,0,0.982827216677626,0.590789906681404,0,0.245976877086227,0.857839051492628,0,0,0,0.185176890317059,0.651616610620649,0,0,1.04337364477569,0.234817388471643,0.288732895522148,0,1.33177906564219,0,0,0,1.40402559083543,0.297262324577456,0.93733833986777,0,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.672786506072164,0.43596006883328,0.22001485746285,0.129271715757778,0,0,0.797814349754612,0,0,0,0.266422179016099,0.57191197463259,0.542621605391443,0,0,0,0,0,0,0.699810938274399,1.2162378064119,0,2.10833939483032,0.718874566474748,0,2.85273810081437,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0.335032530668698,0.637938751653163,0,0,0,0.49076596687656,1.50051156317903,0.271265023699736,1.24782516918484,0.356857977594324,0.473107245101804,0.702848489956279,0,0,0,0,0.368738337083406,0.434418072340414,0.783204629850962,1.37257369524342,0.206768026122887,0,0.106727557803444,0.303127571446259,0,1.5119514666484,0,1.38115775959256,0.561320188866147,0,0.511707249066704,0.160853921143607,0,0.154209693802656,0,0.492762936082855,0,0.464841513839837,0.725156697549733,0,0.0920809889358963,0.34444334449382,0.364182336013434,0.393373244878272,0,0.385076685522074,0,0,0.527758144464379,2.27466768141793,1.19065593693561,0.215915916102139,0,1.89662506280697,0,0.254876273045038,0.831076008928724,0.447749509444357,0,0,2.3080511260475,1.31205858279882,0.650756789328606,0.412164046590889,0.366277859273374,0.165018999841176,0.574265537996172,0,0,0.290012154876366,1.23238893691716,0,0.964856007391714,0.644521469209642,0.870100163485371,0.681813019328807,0.0890320356467374,0.165284915360978,0.384380134730212,0.382838137483752,0,0,0.31481234683064,0.6970372701606,0.308033580176089,0.532306030317022,0,0.37064843820784,0.429374660225974,0.372158369359667,0.632758849437452,0.953150969619124,0,0.42793898803392,0.318203247925937,1.56989728039846,0.719489830333259,0.274537029736055,0.353437207037059,0,0,1.26377536871694,0.975267478179181,0,0,0.136499911407986,0.565621727814851,1.13008116620243,0,0,1.75380354101505,0.578775534266688,0.655894752046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|phase1_expression=0.181678379270557,2.99740733447376,0.986680828671798,0,1.78784437770915,2.61701557230111,5.06599756336621,0.631719873426831,1.56711376919903,0.737201809504527,2.09340350391728,0.218441372130172,0.527533956456907,0.74259811776028,1.65698687863958,0,0.602694528023977,0.730310090387373,0.975865597581014,0.861847406537515,0.204000691244253,1.25381888591235,1.14494394852423,1.23186982565596,1.00434111675842,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0.369754010166788,0,0,0.880801318004542,0,0.401088894940283,0,0.223915474239924,0,0.257575567634187,0.145398238779565,0.377875943688809,0.485168122375632,0.697287110717054,1.23350366406548,1.23882548358041,0,0,0.236482229888585,0.689491361473237,0,0,0.376484679085209,0,0.224723484445085,0.306083892370903,0.641858054152187,0,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0,0,0.368277635987565,0.632924774881769,0.211255286311942,0.425208599930087,0,0.22465726229299,0,0.32145117339416,0.570025487482497,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0,0,0,0.267440195783507,0.144824403882799,0,0,0.12786256184353,0,2.00535164254356,0.579386075843295,0,0.486634870302636,0.378139268656271,3.1042115644759,1.58102614247627,0.982343066232845,0,0,0.324547393654683,0.696518949197069,1.19662164466979,0,0,0,0.993812036833525,3.4409383804245,0.694281003215189,1.69592382577203,3.77549492588915,1.10047216776027,1.8809546988313,1.03366703667732,0.35576626268671,0,1.61131726843659,2.28081631715554,1.46437234528902,1.10298924103761,0.81014194788176,1.07159673940896,1.34717623575702,0.450445921933289,3.06633274931766,3.79706263827252,2.5648244150257,0,0,0,1.49091585508596,0.25326102332916,1.19168262731897,2.0078563452417,0.709336764396714,0.560677600142307,0,0.49333509683432,0.622422070799533,0.404132016209064,1.63461903113459,0.302714855289863,0.576175924479999,0.937285727335186,0.936480230490962,0.570471821544449,0.747243402759005,0.23486899728753,0.647491777472526,0.280901613404497,0.61246251376468,0.491337269247072,0.413303124703062,1.18800285728205,0.741800787835671,0.910161361938026,1.43723628363248,0.505008341862199,0.250237039743928,0.554128230968366,1.31693286264251,0.919463387397059,0.45071417671979,0.340296549480063,0.89694817844431,0,0.211931901159562,0.900273288253207,0.103052529238439,0.515281080091258,0.18611685633159,0.168776332241266,0.194874010322397,1.26216887122057,0.276149695926898,0.646584227275248,0.355009592516614,0.10075209822764,0,0.386521706326594,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.310983165046111,0,0,1.56449532329816,1.28648187638577,1.38134921352481,0.464367928031979,1.44375896333917,0.236613600079688,0.168584690078102,0.241011029883482,0.441175890929576,0,0,0.404493924480493,0.196221465125346,0,1.4763109092493,0,0.4115740113314,1.47008711385542,0,0.982827216677626,0.590789906681404,0,0.245976877086227,0.857839051492628,0,0,0,0.185176890317059,0.651616610620649,0,0,1.04337364477569,0.234817388471643,0.288732895522148,0,1.33177906564219,0,0,0,1.40402559083543,0.297262324577456,0.93733833986777,0,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.672786506072164,0.43596006883328,0.22001485746285,0.129271715757778,0,0,0.797814349754612,0,0,0,0.266422179016099,0.57191197463259,0.542621605391443,0,0,0,0,0,0,0.699810938274399,1.2162378064119,0,2.10833939483032,0.718874566474748,0,2.85273810081437,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0.335032530668698,0.637938751653163,0,0,0,0.49076596687656,1.50051156317903,0.271265023699736,1.24782516918484,0.356857977594324,0.473107245101804,0.702848489956279,0,0,0,0,0.368738337083406,0.434418072340414,0.783204629850962,1.37257369524342,0.206768026122887,0,0.106727557803444,0.303127571446259,0,1.5119514666484,0,1.38115775959256,0.561320188866147,0,0.511707249066704,0.160853921143607,0,0.154209693802656,0,0.492762936082855,0,0.464841513839837,0.725156697549733,0,0.0920809889358963,0.34444334449382,0.364182336013434,0.393373244878272,0,0.385076685522074,0,0,0.527758144464379,2.27466768141793,1.19065593693561,0.215915916102139,0,1.89662506280697,0,0.254876273045038,0.831076008928724,0.447749509444357,0,0,2.3080511260475,1.31205858279882,0.650756789328606,0.412164046590889,0.366277859273374,0.165018999841176,0.574265537996172,0,0,0.290012154876366,1.23238893691716,0,0.964856007391714,0.644521469209642,0.870100163485371,0.681813019328807,0.0890320356467374,0.165284915360978,0.384380134730212,0.382838137483752,0,0,0.31481234683064,0.6970372701606,0.308033580176089,0.532306030317022,0,0.37064843820784,0.429374660225974,0.372158369359667,0.632758849437452,0.953150969619124,0,0.42793898803392,0.318203247925937,1.56989728039846,0.719489830333259,0.274537029736055,0.353437207037059,0,0,1.26377536871694,0.975267478179181,0,0,0.136499911407986,0.565621727814851,1.13008116620243,0,0,1.75380354101505,0.578775534266688,0.655894752046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| ||
|short_description=p6@ME3 | |||
}} | }} |
Latest revision as of 22:31, 24 September 2015
Short description: | p6@ME3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ME3_5end |
Coexpression cluster: | NA |
Association with transcript: | 9bp_to_ENST00000532471_5end |
EntrezGene: | ME3 |
HGNC: | 6985 |
UniProt: | E9PKA0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood vessel endothelial cell | 4.72e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.72e-11 | 18 |
endothelial cell of vascular tree | 1.66e-09 | 24 |
endothelial cell | 1.23e-08 | 36 |
meso-epithelial cell | 1.90e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 1.88e-12 | 25 |
pallium | 1.88e-12 | 25 |
tube | 1.06e-11 | 192 |
blood vessel endothelium | 4.72e-11 | 18 |
endothelium | 4.72e-11 | 18 |
cardiovascular system endothelium | 4.72e-11 | 18 |
regional part of cerebral cortex | 1.11e-10 | 22 |
neocortex | 1.55e-10 | 20 |
brain grey matter | 8.61e-10 | 34 |
gray matter | 8.61e-10 | 34 |
anatomical conduit | 1.45e-09 | 240 |
neural tube | 7.99e-09 | 56 |
neural rod | 7.99e-09 | 56 |
future spinal cord | 7.99e-09 | 56 |
neural keel | 7.99e-09 | 56 |
regional part of nervous system | 8.57e-09 | 53 |
regional part of brain | 8.57e-09 | 53 |
regional part of telencephalon | 1.21e-08 | 32 |
cerebral hemisphere | 1.21e-08 | 32 |
simple squamous epithelium | 2.58e-08 | 22 |
squamous epithelium | 4.71e-08 | 25 |
neural plate | 6.20e-08 | 82 |
presumptive neural plate | 6.20e-08 | 82 |
epithelium | 6.24e-08 | 306 |
telencephalon | 7.46e-08 | 34 |
cell layer | 1.17e-07 | 309 |
neurectoderm | 3.62e-07 | 86 |
ecto-epithelium | 6.42e-07 | 104 |