FFCP PHASE1:Hg19::chr1:209979467..209979494,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3664 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6121 | |||
|TSSclassifier=strong | |||
|UniProt=O14896 | |||
|association_with_transcript=0bp_to_uc001hhq.1,uc009xct.1,uc010psm.1_5end | |||
|cluster_id=chr1:209979467..209979494,- | |||
|description=CAGE_peak_1_at_IRF6_5end | |||
|id=chr1:209979467..209979494,- | |||
|ontology_enrichment_celltype=CL:0000066!2.94e-27!254;CL:0002076!2.19e-17!43;CL:0000223!6.90e-13!59;CL:0002251!6.63e-09!21;CL:0002368!9.42e-08!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;9.66e-16;42!CL:0002251;1.12e-10;20!CL:0002368;1.85e-09;13!CL:0002159;2.43e-07;14!CL:1000507;4.27e-07;10!CL:1000494;4.27e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.64e-30,253;CL:0002076,5.21e-20,42;CL:0000223,2.58e-16,58;CL:0002251,1.15e-10,20;CL:0002368,1.90e-09,13;CL:0002159,2.44e-07,14;CL:1000507,4.14e-07,10;CL:1000494,4.14e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000223;4.08e-09;58 | |||
|ontology_enrichment_disease=DOID:1749!5.47e-10!14;DOID:305!3.38e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.06e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,6.10e-12,14;DOID:305,1.15e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.61e-12!169;UBERON:0000925!1.61e-12!169;UBERON:0006595!1.61e-12!169;UBERON:0007023!4.63e-10!115;UBERON:0000464!1.06e-09!104;UBERON:0000064!2.64e-08!219;UBERON:0001007!2.99e-08!155;UBERON:0001555!2.99e-08!155;UBERON:0007026!2.99e-08!155;UBERON:0001004!7.09e-08!72;UBERON:0000466!7.81e-08!126;UBERON:0000468!9.95e-08!659;UBERON:0000062!1.18e-07!511;UBERON:0000161!2.36e-07!35;UBERON:0004111!3.00e-07!241;UBERON:0001008!4.76e-07!45;UBERON:0004921!6.17e-07!129;UBERON:0004185!6.17e-07!129;UBERON:0000166!7.54e-07!21;UBERON:0006554!9.92e-07!44 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;8.00e-08;30!UBERON:0001008;8.00e-08;30!UBERON:0004921;8.89e-08;33!UBERON:0000161;3.35e-07;19!UBERON:0000166;3.35e-07;19!UBERON:0004211;4.27e-07;10!UBERON:0009773;4.27e-07;10!UBERON:0001231;4.27e-07;10!UBERON:0004810;4.27e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.34e-18,160;UBERON:0000925,6.34e-18,160;UBERON:0006595,6.34e-18,160;UBERON:0001007,8.72e-13,145;UBERON:0001555,8.72e-13,145;UBERON:0007026,8.72e-13,145;UBERON:0001008,1.17e-11,48;UBERON:0006554,3.16e-11,47;UBERON:0004921,4.72e-11,118;UBERON:0001004,8.28e-11,74;UBERON:0000161,6.23e-10,36;UBERON:0000166,1.48e-08,22;UBERON:0005177,2.31e-08,101;UBERON:0005911,3.44e-08,82;UBERON:0005157,6.42e-08,47;UBERON:0005153,1.62e-07,37;UBERON:0005631,3.01e-07,14;UBERON:0000158,3.01e-07,14;UBERON:0004810,4.14e-07,10;UBERON:0001041,7.17e-07,87;UBERON:0004111,7.95e-07,240 | |||
|phase1_expression=0,0,0,0,0,1.74467704820074,0,0,0.261185628199839,16.4641737456011,25.8186432149798,40.4116538440819,40.8838816254103,0.123766352960047,0,1.34465029290355,1.20538905604795,0.730310090387373,0,0,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0.393364276848904,0,0.77408061658038,63.440064489046,90.6629815522533,149.010866097215,0,0,0,0,0.401088894940283,0.434021741431704,0,0,0,0.290796477559129,0,0.242584061187816,0,0.411167888021826,0,0,0,0.236482229888585,0,0,0,0,0.545812300115692,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,3.02699751316684,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,1.09227722252426,0.889509253863555,0.853460445133014,0.400395987036012,1.72425731986345,0,0.954053754535364,1.1384259382189,1.17447437874188,0.382273228125229,0,1.12101712596307,0,0.590129310341499,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535081656179426,0,0,0,0,0,0,0,0,0,0.127986611154418,1.24930726552346,0.236777252044017,0.821127996921047,0,0.267440195783507,0.289648807765598,0,0,0,0,0,0.144846518960824,0,0,0.283604451492204,0.221729397462564,0.263504357079378,7.13835961462534,295.079183516959,213.571839043831,0.324547393654683,0,0.132957960518865,0,0,0,1.78886166630035,0,2.77712401286075,0,0.838998872419812,5.77747888074142,7.31482382878837,1.03366703667732,0,1.00416183829401,0.402829317109147,0,1.95249646038536,0,15.3926970097534,1.07159673940896,1.79623498100936,5.63057402416611,6.13266549863533,1.89853131913626,2.19842092716489,1.31780417436063,3.87780264148325,330.995385576184,0.993943903390637,0.506522046658319,0,0,0.354668382198357,1.12135520028461,2.1349799145941,0,0.311211035399766,0.808264032418128,0.163461903113459,0.151357427644931,0,0,0,3.4228309292667,0,0,0,0.140450806702248,0,0.491337269247072,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0.538168907066586,0.213557388818567,0,0,0.103052529238439,0,0,15.189869901714,18.8053419961113,2.52433774244115,0.552299391853796,0.969876340912871,1.06502877754984,1.0075209822764,4.0694542154517,192.87433145697,137.464044777781,108.985746247821,9.87987019649723,4.10842281796604,8.59835177234436,11.6100381617215,5.55105871926382,3.6497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.0834566161479,6.87979051674338,17.1329072937607,0,22.9988380075622,0.171567810298526,262.74218326825,136.00612144172,60.0157965297436,182.769590742937,0,1.03993478527958,1.44331342025273,0.579652024875384,0.352226082707465,5.05282567163758,6.01881166349594,7.41991193714933,10.2726571734706,9.4433477830436,0,0.468008530278475,0,113.417939124,171.341770762837,143.19284821481,149.02538177754,171.183389784724,208.560177465875,0,0.088048434013226,1.24396869324463,1.29707958075265,0.75745460055828,0.571481048629521,0.763976851116555,2.34434894420094,15.3965201420435,0.719792448923265,0,0.285826432630578,0,0,0,0,0,0,0,0,0,1.41849132023278,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.718874566474748,1.14861935834114,0,0,0,0,0,0.197030760201927,0.431255149719035,0.898401253958239,0,0,0,0,0,2.24702107184155,0,0.828831026872071,0.12269149171914,1.00034104211935,0,0,0.535286966391485,0.315404830067869,0.117141414992713,0.601892199455438,0,0,0,0.921845842708516,0.347534457872331,0,0,0,0.431428401637234,0,40.922222145245,26.6296703216795,21.4697108264073,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,11.2399288120209,130.930725108045,100.736601895871,0,0,0,73.9967365168155,42.2814200703237,15.6869953835371,33.61202167025,37.365276628078,0,0.340187410553031,0.431831832204279,0,5.96082162596476,12.0405545725165,44.0935952367916,83.1076008928724,12.536986264442,0,0.261435451024901,0.769350375349168,1.96808787419823,4.55529752530024,20.402120306249,0,0.082509499920588,212.478249058584,141.063073389925,0,0,0,0,0,0,0,0.0852266274161009,0,135.20306076528,121.848502709477,109.108869182869,149.713515666214,0,0.31481234683064,0,0,0.532306030317022,0,0.55597265731176,0,1.116475108079,0.632758849437452,0,0.255897791311334,0,0,0,0,0,0.235624804691373,0,0,0,0,0,1.05650146756755,0,0,0,0,0,0,0,0.655894752046633,0,1.8589409885985,0.845086807596724,0,0.0982490410131212,0,0,0.844430541190656,0.658589785919804,2.27683904259429,0.699869440489966,121.720972597773,108.588968636798,156.803018200305,18.4521849522487,424.478297453833,593.019594350042,532.116184244011,356.071270320787,0.507447609232169,0,0,0.238231775457789,0,0,0,0.79312517629427,0,0,113.698660215199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.2054270106193,0.73254089635947,0,0,0,53.7175090659803,34.4479029765861,50.9886765484725,1.9882952955326,0.140669416410513,0,0,21.1125408127993,8.567663494796,3.86797481743607,20.9104180719049,0,0,0.311039587661807,25.4327433746935,9.30910108313168,0,19.7286811273867,0,0,0,0.0927680981618513,0,29.9491925248018,36.2958999984212,5.79999660347835,50.1829106939053,18.0520091707864,15.8379746784517,2.06846023944879,0,0,4.42870692906919,0.241192877250816,25.9388951739042,7.96170671504817,17.4373095182593,3.07139556015562,0,77.3801780746248,12.6198423946227,0,10.6059396018508,23.247229902131,21.6208270124796,32.85711945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| |||
|short_description=p1@IRF6 | |||
}} |
Latest revision as of 21:09, 24 September 2015
Short description: | p1@IRF6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IRF6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc001hhq.1, uc009xct.1, uc010psm.1_5end |
EntrezGene: | IRF6 |
HGNC: | 6121 |
UniProt: | O14896 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.64e-30 | 253 |
endo-epithelial cell | 5.21e-20 | 42 |
endodermal cell | 2.58e-16 | 58 |
epithelial cell of alimentary canal | 1.15e-10 | 20 |
respiratory epithelial cell | 1.90e-09 | 13 |
general ecto-epithelial cell | 2.44e-07 | 14 |
kidney tubule cell | 4.14e-07 | 10 |
nephron tubule epithelial cell | 4.14e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 6.34e-18 | 160 |
endoderm | 6.34e-18 | 160 |
presumptive endoderm | 6.34e-18 | 160 |
digestive system | 8.72e-13 | 145 |
digestive tract | 8.72e-13 | 145 |
primitive gut | 8.72e-13 | 145 |
renal system | 1.17e-11 | 48 |
urinary system structure | 3.16e-11 | 47 |
subdivision of digestive tract | 4.72e-11 | 118 |
respiratory system | 8.28e-11 | 74 |
orifice | 6.23e-10 | 36 |
oral opening | 1.48e-08 | 22 |
trunk region element | 2.31e-08 | 101 |
endo-epithelium | 3.44e-08 | 82 |
epithelial fold | 6.42e-08 | 47 |
epithelial bud | 1.62e-07 | 37 |
extraembryonic membrane | 3.01e-07 | 14 |
membranous layer | 3.01e-07 | 14 |
nephron tubule epithelium | 4.14e-07 | 10 |
foregut | 7.17e-07 | 87 |
anatomical conduit | 7.95e-07 | 240 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 6.10e-12 | 14 |
carcinoma | 1.15e-09 | 106 |