FFCP PHASE1:Hg19::chr20:22565185..22565223,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:22565185..22565223,- to FFCP PHASE1:Hg19::chr20:22565185..22565223,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3170 | |EntrezGene=3170 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5022 | |HGNC=5022 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y261,B0ZTD4 | |UniProt=Q9Y261,B0ZTD4 | ||
|association_with_transcript=-84bp_to_ENST00000319993,ENST00000419308,NM_021784,uc002wsm.2_5end | |||
|cluster_id=chr20:22565185..22565223,- | |||
|description=CAGE_peak_3_at_FOXA2_5end | |||
|id=chr20:22565185..22565223,- | |||
|ontology_enrichment_celltype=CL:0000223!3.35e-24!59;CL:0002076!1.92e-22!43;CL:0000066!6.10e-20!254;CL:0002368!9.32e-16!13;CL:0002202!1.40e-10!9;CL:0002632!1.40e-10!9;CL:0000082!3.06e-10!19;CL:0002251!1.51e-07!21;CL:0002159!5.11e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.27e-27;13!CL:0002202;2.77e-18;9!CL:0002632;2.77e-18;9!CL:0002076;5.78e-16;42!CL:0000082;4.24e-12;19!CL:0000307;5.01e-09;3!CL:0002328;5.72e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,8.57e-28,13;CL:0000223,9.99e-21,58;CL:0002076,1.04e-19,42;CL:0002202,2.37e-18,9;CL:0002632,2.37e-18,9;CL:0000066,3.58e-17,253;CL:0000082,4.76e-12,19;CL:0000068,4.57e-09,3;CL:0000069,4.57e-09,3;CL:0000307,4.57e-09,3;CL:0000377,4.57e-09,3;CL:0002328,5.37e-09,3 | |||
|ontology_enrichment_development_v019=UBERON:0001041;6.19e-20;30!UBERON:0009497;2.84e-13;13!CL:0000223;2.71e-12;58!UBERON:0004161;1.45e-09;11!CL:0000377;5.01e-09;3 | |||
|ontology_enrichment_disease=DOID:305!9.33e-15!106;DOID:0050687!2.41e-11!143;DOID:162!1.04e-08!235;DOID:14566!1.33e-08!239;DOID:1749!3.22e-07!14;DOID:0050615!4.49e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:0050615;3.35e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.10e-09,106;DOID:0050687,2.87e-07,143;DOID:0050615,3.75e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.14e-21!169;UBERON:0000925!5.14e-21!169;UBERON:0006595!5.14e-21!169;UBERON:0001007!1.52e-20!155;UBERON:0001555!1.52e-20!155;UBERON:0007026!1.52e-20!155;UBERON:0005911!1.06e-17!82;UBERON:0005153!4.83e-17!37;UBERON:0004921!3.02e-16!129;UBERON:0004185!3.02e-16!129;UBERON:0005178!3.47e-15!34;UBERON:0002224!3.47e-15!34;UBERON:0005181!1.52e-14!35;UBERON:0000077!6.54e-14!130;UBERON:0002048!1.64e-13!22;UBERON:0000117!1.64e-13!22;UBERON:0000171!1.64e-13!22;UBERON:0000170!1.64e-13!22;UBERON:0005597!1.64e-13!22;UBERON:0000118!1.64e-13!22;UBERON:0000466!2.87e-13!126;UBERON:0001004!7.64e-13!72;UBERON:0005157!1.22e-12!51;UBERON:0005177!1.26e-12!107;UBERON:0000065!1.70e-12!53;UBERON:0001041!4.58e-12!98;UBERON:0008947!2.21e-11!38;UBERON:0003258!2.21e-11!38;UBERON:0004802!3.06e-10!19;UBERON:0000115!3.06e-10!19;UBERON:0000464!4.14e-10!104;UBERON:0004807!4.66e-09!28;UBERON:0007196!4.89e-09!14;UBERON:0001558!4.89e-09!14;UBERON:0003929!1.06e-08!54;UBERON:0000344!1.16e-08!12;UBERON:0001048!3.65e-08!168;UBERON:0000915!1.31e-07!52;UBERON:0009569!2.05e-07!113;UBERON:0000072!4.42e-07!46;UBERON:0003100!6.50e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0002048;1.92e-17;22!UBERON:0000117;1.92e-17;22!UBERON:0000171;1.92e-17;22!UBERON:0000170;1.92e-17;22!UBERON:0005178;7.24e-16;34!UBERON:0002224;7.24e-16;34!UBERON:0005181;7.91e-16;35!UBERON:0000065;1.50e-13;44!UBERON:0004807;2.81e-12;22!UBERON:0004802;4.24e-12;19!UBERON:0000115;4.24e-12;19!UBERON:0007196;2.44e-10;15!UBERON:0001558;2.44e-10;15!UBERON:0004815;5.72e-09;3!UBERON:0002031;5.72e-09;3!UBERON:0000072;1.00e-07;37!UBERON:0005911;1.94e-07;36!UBERON:0000915;3.61e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005178,2.01e-18,34;UBERON:0002224,2.01e-18,34;UBERON:0005153,3.29e-18,37;UBERON:0005181,9.17e-18,35;UBERON:0002048,2.12e-17,22;UBERON:0000117,2.12e-17,22;UBERON:0000171,2.12e-17,22;UBERON:0000170,2.12e-17,22;UBERON:0005597,2.12e-17,22;UBERON:0000118,2.12e-17,22;UBERON:0005157,5.93e-17,47;UBERON:0000065,4.43e-16,54;UBERON:0001041,2.38e-15,87;UBERON:0004119,1.31e-14,160;UBERON:0000925,1.31e-14,160;UBERON:0006595,1.31e-14,160;UBERON:0004921,3.00e-14,118;UBERON:0008947,5.73e-14,38;UBERON:0003258,5.73e-14,38;UBERON:0005911,1.03e-13,82;UBERON:0001007,8.89e-13,145;UBERON:0001555,8.89e-13,145;UBERON:0007026,8.89e-13,145;UBERON:0001004,9.85e-13,74;UBERON:0004802,4.76e-12,19;UBERON:0000115,4.76e-12,19;UBERON:0005177,3.63e-11,101;UBERON:0000915,1.70e-10,52;UBERON:0007196,2.23e-10,15;UBERON:0001558,2.23e-10,15;UBERON:0004807,4.55e-09,28;UBERON:0004815,5.37e-09,3;UBERON:0002031,5.37e-09,3;UBERON:0001048,1.61e-08,160;UBERON:0009569,9.26e-08,112;UBERON:0000072,1.01e-07,47;UBERON:0007499,1.18e-07,25;UBERON:0009856,2.74e-07,26 | |||
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| ||
|short_description=p3@FOXA2 | |||
}} | }} |
Latest revision as of 19:02, 24 September 2015
Short description: | p3@FOXA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FOXA2_5end |
Coexpression cluster: | NA |
Association with transcript: | -84bp_to_ENST00000319993, ENST00000419308, NM_021784, uc002wsm.2_5end |
EntrezGene: | FOXA2 |
HGNC: | 5022 |
UniProt: | Q9Y261B0ZTD4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 8.57e-28 | 13 |
endodermal cell | 9.99e-21 | 58 |
endo-epithelial cell | 1.04e-19 | 42 |
epithelial cell of tracheobronchial tree | 2.37e-18 | 9 |
epithelial cell of lower respiratory tract | 2.37e-18 | 9 |
epithelial cell | 3.58e-17 | 253 |
epithelial cell of lung | 4.76e-12 | 19 |
duct epithelial cell | 4.57e-09 | 3 |
branched duct epithelial cell | 4.57e-09 | 3 |
tracheal epithelial cell | 4.57e-09 | 3 |
tracheoblast | 4.57e-09 | 3 |
bronchial epithelial cell | 5.37e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.10e-09 | 106 |
cell type cancer | 2.87e-07 | 143 |
respiratory system cancer | 3.75e-07 | 16 |