FFCP PHASE1:Hg19::chr3:129693555..129693572,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7200 | |EntrezGene=7200 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12298 | |HGNC=12298 | ||
|TSSclassifier=strong | |||
|UniProt=D6RFM1 | |UniProt=D6RFM1 | ||
|association_with_transcript=24bp_to_ENST00000507066_5end | |association_with_transcript=24bp_to_ENST00000507066_5end | ||
|cluster_id=chr3:129693555..129693572,+ | |||
|description=CAGE_peak_1_at_TRH_5end | |description=CAGE_peak_1_at_TRH_5end | ||
|id=chr3:129693555..129693572,+ | |id=chr3:129693555..129693572,+ | ||
|ontology_enrichment_celltype=CL:0002334!7.91e-11!12 | |ontology_enrichment_celltype=CL:0002334!7.91e-11!12 | ||
|ontology_enrichment_celltype_v019=CL:0002334;4.65e-15;12!CL:0000135;6.25e-09;3!CL:0000388;6.25e-09;3!CL:0002580;1.32e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,4.28e-15,12;CL:0000135,6.03e-09,3;CL:0000388,6.03e-09,3;CL:0002580,1.26e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.98e-15!82;UBERON:0001049!1.03e-14!57;UBERON:0005068!1.03e-14!57;UBERON:0006241!1.03e-14!57;UBERON:0007135!1.03e-14!57;UBERON:0005743!1.86e-14!86;UBERON:0003075!3.06e-14!86;UBERON:0007284!3.06e-14!86;UBERON:0000073!1.66e-13!94;UBERON:0001016!1.66e-13!94;UBERON:0002346!5.40e-13!90;UBERON:0002616!1.32e-11!59;UBERON:0000955!8.14e-10!69;UBERON:0006238!8.14e-10!69;UBERON:0007023!2.45e-09!115;UBERON:0002780!4.21e-09!41;UBERON:0001890!4.21e-09!41;UBERON:0006240!4.21e-09!41;UBERON:0002020!4.30e-09!34;UBERON:0003528!4.30e-09!34;UBERON:0001893!8.58e-09!34;UBERON:0003080!1.00e-08!42;UBERON:0002791!3.35e-08!33;UBERON:0004121!3.92e-08!169;UBERON:0003076!5.39e-08!15;UBERON:0003057!5.39e-08!15;UBERON:0001869!6.97e-08!32;UBERON:0000924!1.35e-07!173;UBERON:0006601!1.35e-07!173;UBERON:0002298!7.95e-07!8;UBERON:0000153!9.07e-07!129;UBERON:0007811!9.07e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0004732;2.06e-10;13!UBERON:0002298;5.33e-10;6!UBERON:0007846;6.25e-09;3!UBERON:0000043;6.25e-09;3!UBERON:0007845;6.25e-09;3!UBERON:0004733;6.44e-09;12!UBERON:0002028;6.44e-09;12!UBERON:0001896;2.95e-08;3!UBERON:0005290;2.95e-08;3!UBERON:0004457;8.04e-07;9!UBERON:0000042;8.04e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,1.77e-11,15;UBERON:0003057,1.77e-11,15;UBERON:0004732,2.17e-10,13;UBERON:0002298,6.00e-10,6;UBERON:0007846,6.03e-09,3;UBERON:0000043,6.03e-09,3;UBERON:0007845,6.03e-09,3;UBERON:0004733,6.74e-09,12;UBERON:0002028,6.74e-09,12;UBERON:0007277,6.74e-09,12;UBERON:0001896,2.40e-08,3;UBERON:0005290,2.40e-08,3;UBERON:0010096,2.40e-08,3;UBERON:0001016,2.75e-08,89;UBERON:0001017,5.97e-08,81;UBERON:0003075,6.66e-08,82;UBERON:0007284,6.66e-08,82;UBERON:0002346,2.64e-07,86;UBERON:0001049,9.41e-07,56;UBERON:0005068,9.41e-07,56;UBERON:0006241,9.41e-07,56;UBERON:0007135,9.41e-07,56 | |||
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| ||
|short_description=p1@TRH | |short_description=p1@TRH | ||
}} | }} |
Latest revision as of 18:31, 24 September 2015
Short description: | p1@TRH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRH_5end |
Coexpression cluster: | NA |
Association with transcript: | 24bp_to_ENST00000507066_5end |
EntrezGene: | TRH |
HGNC: | 12298 |
UniProt: | D6RFM1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 4.28e-15 | 12 |
fibrocyte | 6.03e-09 | 3 |
tendon cell | 6.03e-09 | 3 |
preadipocyte of the breast | 1.26e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
posterior neural tube | 1.77e-11 | 15 |
chordal neural plate | 1.77e-11 | 15 |
segmental subdivision of nervous system | 2.17e-10 | 13 |
brainstem | 6.00e-10 | 6 |
dense regular connective tissue | 6.03e-09 | 3 |
tendon | 6.03e-09 | 3 |
regular connective tissue | 6.03e-09 | 3 |
segmental subdivision of hindbrain | 6.74e-09 | 12 |
hindbrain | 6.74e-09 | 12 |
presumptive hindbrain | 6.74e-09 | 12 |
medulla oblongata | 2.40e-08 | 3 |
myelencephalon | 2.40e-08 | 3 |
future myelencephalon | 2.40e-08 | 3 |
nervous system | 2.75e-08 | 89 |
central nervous system | 5.97e-08 | 81 |
neural plate | 6.66e-08 | 82 |
presumptive neural plate | 6.66e-08 | 82 |
neurectoderm | 2.64e-07 | 86 |
neural tube | 9.41e-07 | 56 |
neural rod | 9.41e-07 | 56 |
future spinal cord | 9.41e-07 | 56 |
neural keel | 9.41e-07 | 56 |