FFCP PHASE1:Hg19::chr3:129693504..129693519,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7200 | |EntrezGene=7200 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12298 | |HGNC=12298 | ||
|TSSclassifier=strong | |||
|UniProt=D6RFM1 | |UniProt=D6RFM1 | ||
|association_with_transcript=-11bp_to_ENST00000507066_5end | |association_with_transcript=-11bp_to_ENST00000507066_5end | ||
|cluster_id=chr3:129693504..129693519,+ | |||
|coexpression_cluster_id=C430 | |coexpression_cluster_id=C430 | ||
|description=CAGE_peak_3_at_TRH_5end | |description=CAGE_peak_3_at_TRH_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000135!2.48e-07!3;CL:0000386!2.48e-07!3;CL:0000388!2.48e-07!3 | |ontology_enrichment_celltype=CL:0000135!2.48e-07!3;CL:0000386!2.48e-07!3;CL:0000388!2.48e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002032;2.16e-10;1!CL:0000557;2.16e-10;1!CL:0000037;6.32e-10;1!CL:0001024;6.32e-10;1!CL:0002322;8.61e-08;5 | |ontology_enrichment_celltype_v019=CL:0002032;2.16e-10;1!CL:0000557;2.16e-10;1!CL:0000037;6.32e-10;1!CL:0001024;6.32e-10;1!CL:0002322;8.61e-08;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0001024,5.30e-10,1;CL:0002322,8.32e-08,5 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!4.44e-14!86;UBERON:0001017!6.00e-14!82;UBERON:0000073!4.94e-13!94;UBERON:0001016!4.94e-13!94;UBERON:0001049!7.33e-12!57;UBERON:0005068!7.33e-12!57;UBERON:0006241!7.33e-12!57;UBERON:0007135!7.33e-12!57;UBERON:0001869!7.57e-12!32;UBERON:0002020!5.80e-11!34;UBERON:0003528!5.80e-11!34;UBERON:0001893!6.32e-11!34;UBERON:0002791!5.00e-10!33;UBERON:0002616!5.22e-10!59;UBERON:0002780!1.32e-09!41;UBERON:0001890!1.32e-09!41;UBERON:0006240!1.32e-09!41;UBERON:0000955!1.72e-09!69;UBERON:0006238!1.72e-09!69;UBERON:0003080!2.78e-09!42;UBERON:0003075!3.17e-09!86;UBERON:0007284!3.17e-09!86;UBERON:0002346!1.61e-08!90;UBERON:0000956!1.07e-07!25;UBERON:0000203!1.07e-07!25;UBERON:0002619!1.69e-07!22;UBERON:0000043!2.48e-07!3;UBERON:0001950!5.45e-07!20;UBERON:0003056!6.41e-07!61;UBERON:0007023!9.29e-07!115 | |ontology_enrichment_uberon=UBERON:0005743!4.44e-14!86;UBERON:0001017!6.00e-14!82;UBERON:0000073!4.94e-13!94;UBERON:0001016!4.94e-13!94;UBERON:0001049!7.33e-12!57;UBERON:0005068!7.33e-12!57;UBERON:0006241!7.33e-12!57;UBERON:0007135!7.33e-12!57;UBERON:0001869!7.57e-12!32;UBERON:0002020!5.80e-11!34;UBERON:0003528!5.80e-11!34;UBERON:0001893!6.32e-11!34;UBERON:0002791!5.00e-10!33;UBERON:0002616!5.22e-10!59;UBERON:0002780!1.32e-09!41;UBERON:0001890!1.32e-09!41;UBERON:0006240!1.32e-09!41;UBERON:0000955!1.72e-09!69;UBERON:0006238!1.72e-09!69;UBERON:0003080!2.78e-09!42;UBERON:0003075!3.17e-09!86;UBERON:0007284!3.17e-09!86;UBERON:0002346!1.61e-08!90;UBERON:0000956!1.07e-07!25;UBERON:0000203!1.07e-07!25;UBERON:0002619!1.69e-07!22;UBERON:0000043!2.48e-07!3;UBERON:0001950!5.45e-07!20;UBERON:0003056!6.41e-07!61;UBERON:0007023!9.29e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;3.54e-07;49 | |ontology_enrichment_uberon_v019=UBERON:0000922;3.54e-07;49 | ||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0.363356758541113,0,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0,0,0.286235987131057,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,1.76160263600908,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0.306083892370903,0.320929027076094,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628975936525128,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96513985737078,1.68152568894461,6.32121803460185,0,0,0,0,0,0,1.94826728407911,0,0.294605907474837,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0,1.51052125730374,1.7622379352613,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.507095264676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0.254094624222463,1.30139853857622,0.773288812777695,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99267679560631,0.368738337083406,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0.256278298511402,0,0,0,0.154209693802656,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633322905892992,1.97576935775941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7235483311913,0,29.5405965649846,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,7.98455192004777,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0.219385397153973,0,0,1.00035336054936,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,2.93774963014692,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,5.10986352267889,0,0,0.279282401272254,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0.136203406111576,0.160753148465019,0,0,0.2249738915515,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0.13223260174269,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.332787154610557,0.18628920882415,0,0,0,0,0,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0.636008701306837,3.70650201505891,0,0,0,0.128458450192919,0,0,0.205116364240755,1.76450187355203,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.451261970095544,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,1.09394961803644,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0.571812353413251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6906229103336,0.169927114687817,0,0.193373663920732,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0.743990036333503,0.462175628631418,4.32626562123789,0,0,0,0.407955318967927,0.534434810531121,0,0.752122617877125,0,0.267964130156178,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0.366724332548599,0,0,0,0 | |phase1_expression=0.363356758541113,0,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0,0,0.286235987131057,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,1.76160263600908,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0.306083892370903,0.320929027076094,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628975936525128,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96513985737078,1.68152568894461,6.32121803460185,0,0,0,0,0,0,1.94826728407911,0,0.294605907474837,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0,1.51052125730374,1.7622379352613,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.507095264676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0.254094624222463,1.30139853857622,0.773288812777695,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99267679560631,0.368738337083406,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0.256278298511402,0,0,0,0.154209693802656,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633322905892992,1.97576935775941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7235483311913,0,29.5405965649846,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,7.98455192004777,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0.219385397153973,0,0,1.00035336054936,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,2.93774963014692,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,5.10986352267889,0,0,0.279282401272254,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0.136203406111576,0.160753148465019,0,0,0.2249738915515,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0.13223260174269,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.332787154610557,0.18628920882415,0,0,0,0,0,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0.636008701306837,3.70650201505891,0,0,0,0.128458450192919,0,0,0.205116364240755,1.76450187355203,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.451261970095544,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,1.09394961803644,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0.571812353413251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6906229103336,0.169927114687817,0,0.193373663920732,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0.743990036333503,0.462175628631418,4.32626562123789,0,0,0,0.407955318967927,0.534434810531121,0,0.752122617877125,0,0.267964130156178,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0.366724332548599,0,0,0,0 | ||
|short_description=p3@TRH | |short_description=p3@TRH | ||
}} | }} |
Latest revision as of 18:31, 24 September 2015
Short description: | p3@TRH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TRH_5end |
Coexpression cluster: | C430_acute_giant_chronic_CD34_CD133_melanoma_skeletal |
Association with transcript: | -11bp_to_ENST00000507066_5end |
EntrezGene: | TRH |
HGNC: | 12298 |
UniProt: | D6RFM1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD34-positive, CD38-negative hematopoietic stem cell | 5.30e-10 | 1 |
embryonic stem cell | 8.32e-08 | 5 |