FFCP PHASE1:Hg19::chr6:130544089..130544105,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:130544089..130544105,- to FFCP PHASE1:Hg19::chr6:130544089..130544105,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=154075 | |EntrezGene=154075 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21574 | |HGNC=21574 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N6K7 | |UniProt=Q8N6K7 | ||
|association_with_transcript=0bp_to_ENST00000439090,NM_001017373,uc003qbw.2_5end | |||
|cluster_id=chr6:130544089..130544105,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_1_at_SAMD3_5end | |||
|id=chr6:130544089..130544105,- | |||
|ontology_enrichment_celltype=CL:0000791!1.97e-24!18;CL:0000789!1.97e-24!18;CL:0002420!1.97e-24!18;CL:0002419!1.97e-24!18;CL:0000790!1.97e-24!18;CL:0000738!6.77e-24!140;CL:0000838!4.69e-21!52;CL:0000542!1.96e-20!53;CL:0000051!1.96e-20!53;CL:0002087!5.43e-20!119;CL:0000084!7.29e-20!25;CL:0000827!7.29e-20!25;CL:0002031!2.97e-16!124;CL:0000625!3.87e-16!11;CL:0000037!1.31e-15!172;CL:0000566!1.31e-15!172;CL:0002032!5.75e-14!165;CL:0000837!5.75e-14!165;CL:0000988!1.10e-13!182;CL:0000624!9.19e-09!6;CL:0000094!1.56e-07!8;CL:0000236!2.71e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.70e-43;18!CL:0000789;1.70e-43;18!CL:0002419;1.70e-43;18!CL:0000084;5.17e-37;25!CL:0000625;2.85e-28;11!CL:0000542;2.90e-19;53!CL:0000624;1.09e-14;6!CL:0000623;1.31e-08;3!CL:0000898;1.49e-08;3!CL:0000226;4.23e-08;3!CL:0000842;4.23e-08;3!CL:0002087;6.81e-08;104!CL:0000767;7.92e-08;3!CL:0002619;2.68e-07;3!CL:0000094;3.45e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.50e-43,18;CL:0000789,1.50e-43,18;CL:0002420,1.50e-43,18;CL:0002419,1.50e-43,18;CL:0000790,1.50e-43,18;CL:0000084,4.93e-37,25;CL:0000827,4.93e-37,25;CL:0000838,2.76e-33,52;CL:0000542,1.71e-32,53;CL:0000051,1.71e-32,53;CL:0000625,2.82e-28,11;CL:0000738,8.27e-22,136;CL:0002087,1.24e-20,115;CL:0002031,1.23e-15,120;CL:0000037,1.68e-15,168;CL:0000624,9.58e-15,6;CL:0000988,3.75e-14,177;CL:0002032,1.30e-13,161;CL:0000837,1.30e-13,161;CL:0000623,1.28e-08,3;CL:0000825,1.28e-08,3;CL:0000898,1.45e-08,3;CL:0000226,4.23e-08,3;CL:0000842,4.23e-08,3;CL:0000767,7.93e-08,3;CL:0002619,2.34e-07,3;CL:0000094,3.55e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000790;1.70e-43;18!CL:0000051;2.90e-19;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.97e-21!115;UBERON:0000178!6.73e-12!15;UBERON:0000179!6.73e-12!15;UBERON:0000463!6.73e-12!15;UBERON:0002390!1.56e-08!102;UBERON:0003061!1.56e-08!102;UBERON:0002193!4.57e-08!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.40e-21;15!UBERON:0000179;1.40e-21;15!UBERON:0000463;1.40e-21;15!UBERON:0002390;7.17e-13;32!UBERON:0002193;1.38e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.38e-21,15;UBERON:0000179,1.38e-21,15;UBERON:0000463,1.38e-21,15;UBERON:0004177,2.73e-08,7;UBERON:0005057,2.73e-08,7;UBERON:0002390,6.75e-07,98;UBERON:0003061,6.75e-07,98 | |||
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| ||
|short_description=p1@SAMD3 | |||
}} | }} |
Latest revision as of 17:25, 24 September 2015
Short description: | p1@SAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SAMD3_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000439090, NM_001017373, uc003qbw.2_5end |
EntrezGene: | SAMD3 |
HGNC: | 21574 |
UniProt: | Q8N6K7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.50e-43 | 18 |
alpha-beta T cell | 1.50e-43 | 18 |
immature T cell | 1.50e-43 | 18 |
mature T cell | 1.50e-43 | 18 |
immature alpha-beta T cell | 1.50e-43 | 18 |
T cell | 4.93e-37 | 25 |
pro-T cell | 4.93e-37 | 25 |
lymphoid lineage restricted progenitor cell | 2.76e-33 | 52 |
lymphocyte | 1.71e-32 | 53 |
common lymphoid progenitor | 1.71e-32 | 53 |
CD8-positive, alpha-beta T cell | 2.82e-28 | 11 |
leukocyte | 8.27e-22 | 136 |
nongranular leukocyte | 1.24e-20 | 115 |
hematopoietic lineage restricted progenitor cell | 1.23e-15 | 120 |
hematopoietic stem cell | 1.68e-15 | 168 |
CD4-positive, alpha-beta T cell | 9.58e-15 | 6 |
hematopoietic cell | 3.75e-14 | 177 |
hematopoietic oligopotent progenitor cell | 1.30e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.30e-13 | 161 |
natural killer cell | 1.28e-08 | 3 |
pro-NK cell | 1.28e-08 | 3 |
naive T cell | 1.45e-08 | 3 |
single nucleate cell | 4.23e-08 | 3 |
mononuclear cell | 4.23e-08 | 3 |
basophil | 7.93e-08 | 3 |
adult endothelial progenitor cell | 2.34e-07 | 3 |
granulocyte | 3.55e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
blood | 1.38e-21 | 15 |
haemolymphatic fluid | 1.38e-21 | 15 |
organism substance | 1.38e-21 | 15 |
hemopoietic organ | 2.73e-08 | 7 |
immune organ | 2.73e-08 | 7 |
hematopoietic system | 6.75e-07 | 98 |
blood island | 6.75e-07 | 98 |