FFCP PHASE1:Hg19::chr6:130536707..130536763,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=154075 | |EntrezGene=154075 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21574 | |HGNC=21574 | ||
|TSSclassifier=strong | |||
|UniProt=E9PR45 | |UniProt=E9PR45 | ||
|association_with_transcript=23bp_to_ENST00000532763_5end | |association_with_transcript=23bp_to_ENST00000532763_5end | ||
|cluster_id=chr6:130536707..130536763,- | |||
|coexpression_cluster_id=C98 | |||
|description=CAGE_peak_2_at_SAMD3_5end | |description=CAGE_peak_2_at_SAMD3_5end | ||
|id=chr6:130536707..130536763,- | |id=chr6:130536707..130536763,- | ||
|ontology_enrichment_celltype=CL:0000738!1.10e-27!140;CL:0002087!5.77e-25!119;CL:0000791!1.67e-20!18;CL:0000789!1.67e-20!18;CL:0002420!1.67e-20!18;CL:0002419!1.67e-20!18;CL:0000790!1.67e-20!18;CL:0002031!1.72e-20!124;CL:0000037!3.20e-19!172;CL:0000566!3.20e-19!172;CL:0000084!2.37e-17!25;CL:0000827!2.37e-17!25;CL:0000988!8.03e-17!182;CL:0002032!3.96e-16!165;CL:0000837!3.96e-16!165;CL:0002057!1.14e-14!42;CL:0000625!1.31e-14!11;CL:0000766!2.16e-14!76;CL:0000860!4.74e-13!45;CL:0002194!4.79e-12!63;CL:0000576!4.79e-12!63;CL:0000040!4.79e-12!63;CL:0000559!4.79e-12!63;CL:0002009!2.39e-11!65;CL:0000838!2.65e-11!52;CL:0000542!6.51e-11!53;CL:0000051!6.51e-11!53;CL:0000839!1.97e-10!70;CL:0000557!3.89e-10!71;CL:0000763!6.01e-07!112;CL:0000049!6.01e-07!112 | |ontology_enrichment_celltype=CL:0000738!1.10e-27!140;CL:0002087!5.77e-25!119;CL:0000791!1.67e-20!18;CL:0000789!1.67e-20!18;CL:0002420!1.67e-20!18;CL:0002419!1.67e-20!18;CL:0000790!1.67e-20!18;CL:0002031!1.72e-20!124;CL:0000037!3.20e-19!172;CL:0000566!3.20e-19!172;CL:0000084!2.37e-17!25;CL:0000827!2.37e-17!25;CL:0000988!8.03e-17!182;CL:0002032!3.96e-16!165;CL:0000837!3.96e-16!165;CL:0002057!1.14e-14!42;CL:0000625!1.31e-14!11;CL:0000766!2.16e-14!76;CL:0000860!4.74e-13!45;CL:0002194!4.79e-12!63;CL:0000576!4.79e-12!63;CL:0000040!4.79e-12!63;CL:0000559!4.79e-12!63;CL:0002009!2.39e-11!65;CL:0000838!2.65e-11!52;CL:0000542!6.51e-11!53;CL:0000051!6.51e-11!53;CL:0000839!1.97e-10!70;CL:0000557!3.89e-10!71;CL:0000763!6.01e-07!112;CL:0000049!6.01e-07!112 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.54e-30;18!CL:0000789;1.54e-30;18!CL:0002419;1.54e-30;18!CL:0000625;5.78e-26;11!CL:0000084;1.21e-20;25!CL:0000094;1.17e-09;8!CL:0000623;2.46e-08;3!CL:0000767;5.18e-08;3!CL:0000226;8.45e-08;3!CL:0000842;8.45e-08;3!CL:0002087;1.91e-07;104!CL:0002619;6.24e-07;3!CL:0000081;8.51e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.62e-30,18;CL:0000789,1.62e-30,18;CL:0002420,1.62e-30,18;CL:0002419,1.62e-30,18;CL:0000790,1.62e-30,18;CL:0000625,5.98e-26,11;CL:0000738,1.32e-21,136;CL:0000084,1.25e-20,25;CL:0000827,1.25e-20,25;CL:0002087,3.44e-18,115;CL:0000037,3.92e-15,168;CL:0000988,9.38e-14,177;CL:0002031,1.35e-13,120;CL:0000838,6.97e-13,52;CL:0000542,1.56e-12,53;CL:0000051,1.56e-12,53;CL:0002032,1.70e-12,161;CL:0000837,1.70e-12,161;CL:0000094,1.11e-09,8;CL:0000623,2.41e-08,3;CL:0000825,2.41e-08,3;CL:0000767,5.07e-08,3;CL:0000766,5.82e-08,72;CL:0000226,8.57e-08,3;CL:0000842,8.57e-08,3;CL:0002619,4.55e-07,3;CL:0000081,8.21e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.54e-30;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.92e-23!115;UBERON:0002390!6.00e-19!102;UBERON:0003061!6.00e-19!102;UBERON:0002193!1.43e-16!112;UBERON:0000178!3.22e-11!15;UBERON:0000179!3.22e-11!15;UBERON:0000463!3.22e-11!15;UBERON:0002371!1.96e-08!80;UBERON:0002405!1.62e-07!115;UBERON:0001474!3.65e-07!86 | |ontology_enrichment_uberon=UBERON:0007023!1.92e-23!115;UBERON:0002390!6.00e-19!102;UBERON:0003061!6.00e-19!102;UBERON:0002193!1.43e-16!112;UBERON:0000178!3.22e-11!15;UBERON:0000179!3.22e-11!15;UBERON:0000463!3.22e-11!15;UBERON:0002371!1.96e-08!80;UBERON:0002405!1.62e-07!115;UBERON:0001474!3.65e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.27e-21;15!UBERON:0000179;7.27e-21;15!UBERON:0000463;7.27e-21;15!UBERON:0002390;1.64e-13;32!UBERON:0002193;4.31e-08;42!UBERON:0004177;5.58e-07;5!UBERON:0005057;5.58e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.40e-21,15;UBERON:0000179,7.40e-21,15;UBERON:0000463,7.40e-21,15;UBERON:0002390,7.63e-16,98;UBERON:0003061,7.63e-16,98;UBERON:0002193,1.34e-14,108;UBERON:0004177,1.08e-10,7;UBERON:0005057,1.08e-10,7;UBERON:0002370,6.80e-09,4;UBERON:0005058,6.80e-09,4;UBERON:0009113,6.80e-09,4;UBERON:0003295,6.80e-09,4;UBERON:0005562,6.80e-09,4 | |||
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| ||
|short_description=p2@SAMD3 | |short_description=p2@SAMD3 | ||
}} | }} |
Latest revision as of 17:24, 24 September 2015
Short description: | p2@SAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SAMD3_5end |
Coexpression cluster: | C98_CD8_Natural_Basophils_blood_CD4_Peripheral_Whole |
Association with transcript: | 23bp_to_ENST00000532763_5end |
EntrezGene: | SAMD3 |
HGNC: | 21574 |
UniProt: | E9PR45 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.62e-30 | 18 |
alpha-beta T cell | 1.62e-30 | 18 |
immature T cell | 1.62e-30 | 18 |
mature T cell | 1.62e-30 | 18 |
immature alpha-beta T cell | 1.62e-30 | 18 |
CD8-positive, alpha-beta T cell | 5.98e-26 | 11 |
leukocyte | 1.32e-21 | 136 |
T cell | 1.25e-20 | 25 |
pro-T cell | 1.25e-20 | 25 |
nongranular leukocyte | 3.44e-18 | 115 |
hematopoietic stem cell | 3.92e-15 | 168 |
hematopoietic cell | 9.38e-14 | 177 |
hematopoietic lineage restricted progenitor cell | 1.35e-13 | 120 |
lymphoid lineage restricted progenitor cell | 6.97e-13 | 52 |
lymphocyte | 1.56e-12 | 53 |
common lymphoid progenitor | 1.56e-12 | 53 |
hematopoietic oligopotent progenitor cell | 1.70e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.70e-12 | 161 |
granulocyte | 1.11e-09 | 8 |
natural killer cell | 2.41e-08 | 3 |
pro-NK cell | 2.41e-08 | 3 |
basophil | 5.07e-08 | 3 |
myeloid leukocyte | 5.82e-08 | 72 |
single nucleate cell | 8.57e-08 | 3 |
mononuclear cell | 8.57e-08 | 3 |
adult endothelial progenitor cell | 4.55e-07 | 3 |
blood cell | 8.21e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
blood | 7.40e-21 | 15 |
haemolymphatic fluid | 7.40e-21 | 15 |
organism substance | 7.40e-21 | 15 |
hematopoietic system | 7.63e-16 | 98 |
blood island | 7.63e-16 | 98 |
hemolymphoid system | 1.34e-14 | 108 |
hemopoietic organ | 1.08e-10 | 7 |
immune organ | 1.08e-10 | 7 |
thymus | 6.80e-09 | 4 |
hemolymphoid system gland | 6.80e-09 | 4 |
thymic region | 6.80e-09 | 4 |
pharyngeal gland | 6.80e-09 | 4 |
thymus primordium | 6.80e-09 | 4 |