FFCP PHASE1:Hg19::chr9:117880804..117880815,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3371 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5318 | |||
|TSSclassifier=strong | |||
|UniProt=P24821,B4E1W8,Q4LE33 | |||
|association_with_transcript=-268bp_to_ENST00000350763,NM_002160_5end | |||
|cluster_id=chr9:117880804..117880815,- | |||
|coexpression_cluster_id=C2686 | |||
|description=CAGE_peak_4_at_TNC_5end | |||
|id=chr9:117880804..117880815,- | |||
|ontology_enrichment_celltype=CL:0000128!1.98e-10!7;CL:0000126!1.98e-10!7;CL:0000127!1.98e-10!7;CL:0002453!1.98e-10!7;CL:0002620!1.51e-07!23;CL:0000133!2.37e-07!59;CL:0002319!2.63e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002603;1.16e-27;3!CL:0000064;2.08e-27;3!CL:0000067;2.08e-27;3!CL:0005012;2.08e-27;3!CL:0002304;2.08e-27;3!CL:0000128;1.36e-20;7!CL:0000126;1.36e-20;7!CL:0000127;1.36e-20;7!CL:0000047;4.28e-19;2!CL:0002319;1.72e-11;25!CL:0000243;1.37e-08;15!CL:0000125;1.37e-08;15!CL:0000095;1.07e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002603,1.22e-27,3;CL:0000064,1.91e-27,3;CL:0000067,1.91e-27,3;CL:0005012,1.91e-27,3;CL:0002304,1.91e-27,3;CL:0000128,1.26e-20,7;CL:0000126,1.26e-20,7;CL:0000127,1.26e-20,7;CL:0002453,1.26e-20,7;CL:0000133,8.50e-16,59;CL:0000221,1.04e-12,72;CL:0002319,1.69e-11,25;CL:0000243,1.33e-08,15;CL:0000125,1.33e-08,15;CL:0000030,1.33e-08,15;CL:0000339,1.33e-08,15;CL:0000095,1.04e-07,17;CL:0000123,1.04e-07,17;CL:0000333,6.51e-07,41 | |||
|ontology_enrichment_development_v019=CL:0000339;1.37e-08;15!CL:0000133;2.38e-08;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;8.61e-08;5!DOID:450;8.61e-08;5!DOID:66;8.61e-08;5!DOID:423;8.61e-08;5!DOID:0080000;8.61e-08;5!DOID:11722;8.61e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,9.55e-08,5;DOID:450,9.55e-08,5;DOID:66,9.55e-08,5;DOID:423,9.55e-08,5;DOID:0080000,9.55e-08,5;DOID:11722,9.55e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0001017!5.50e-13!82;UBERON:0005743!7.48e-12!86;UBERON:0000073!2.73e-11!94;UBERON:0001016!2.73e-11!94;UBERON:0001049!1.33e-09!57;UBERON:0005068!1.33e-09!57;UBERON:0006241!1.33e-09!57;UBERON:0007135!1.33e-09!57;UBERON:0000955!3.79e-09!69;UBERON:0006238!3.79e-09!69;UBERON:0002616!6.06e-09!59;UBERON:0000924!1.12e-08!173;UBERON:0006601!1.12e-08!173;UBERON:0004121!2.87e-08!169;UBERON:0002346!3.72e-08!90;UBERON:0003075!9.82e-08!86;UBERON:0007284!9.82e-08!86;UBERON:0000033!8.09e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001778;2.08e-27;3!UBERON:0001775;2.08e-27;3!UBERON:0000488;1.01e-20;4!UBERON:0002037;3.86e-14;6!UBERON:0002203;5.14e-14;6!UBERON:0001768;5.14e-14;6!UBERON:0002200;5.14e-14;6!UBERON:0007625;4.21e-13;11!UBERON:0001801;2.48e-10;14!UBERON:0002680;1.34e-09;9!UBERON:0001895;1.34e-09;9!UBERON:0006876;7.15e-08;11!UBERON:0000019;1.19e-07;19!UBERON:0000047;1.19e-07;19!UBERON:0004088;1.19e-07;19!UBERON:0010230;1.19e-07;19!UBERON:0004733;2.59e-07;12!UBERON:0002028;2.59e-07;12!UBERON:0000970;2.85e-07;20!UBERON:0010371;5.95e-07;31!UBERON:0002104;6.24e-07;21!UBERON:0001456;6.24e-07;21!UBERON:0004732;8.77e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.91e-27,3;UBERON:0001775,1.91e-27,3;UBERON:0000488,9.45e-21,4;UBERON:0002037,3.96e-14,6;UBERON:0006215,3.96e-14,6;UBERON:0002203,4.93e-14,6;UBERON:0001768,4.93e-14,6;UBERON:0002200,4.93e-14,6;UBERON:0007625,3.72e-13,11;UBERON:0001801,2.25e-10,14;UBERON:0002680,1.36e-09,9;UBERON:0001895,1.36e-09,9;UBERON:0010092,1.36e-09,9;UBERON:0006876,6.99e-08,11;UBERON:0003075,2.49e-07,82;UBERON:0007284,2.49e-07,82;UBERON:0004733,2.62e-07,12;UBERON:0002028,2.62e-07,12;UBERON:0007277,2.62e-07,12;UBERON:0000019,2.66e-07,20;UBERON:0000047,2.66e-07,20;UBERON:0010312,2.66e-07,20;UBERON:0004088,2.66e-07,20;UBERON:0010230,2.66e-07,20;UBERON:0003072,2.66e-07,20;UBERON:0004128,2.66e-07,20;UBERON:0003071,2.66e-07,20;UBERON:0005085,5.62e-07,31;UBERON:0000970,5.87e-07,21;UBERON:0002104,5.87e-07,21;UBERON:0002346,6.20e-07,86;UBERON:0010371,7.57e-07,104;UBERON:0004732,8.86e-07,13 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0.331397375727916,0,0,0,0,5.78668972960903,2.24400760368678,7.20945859399602,0.572471974262113,1.36874425072884,0.87879847716362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0.50133791063589,0.434539556882471,0,1.45990461090791,4.91581049253153,2.66075276955077,2.45937399940753,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0.30648779579902,0.150238058906597,0,0.538168907066586,1.2813443329114,0.211931901159562,1.20036438433761,0,0.515281080091258,0.18611685633159,0.168776332241266,0.584622030967192,0.504867548488229,0.920498986422993,0,0.355009592516614,0.503760491138201,0.169560592310488,0,0,0,0,0,0.348581828608555,0.207322110030741,0.252320850875628,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0.0925884451585296,0,0,0,1.39116485970092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.531876233169741,0,0,0,0.266422179016099,0,0.542621605391443,0,0,0,0,0,1.74306691720059,0.399891964728228,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,7.11464947822898,3.90419561572865,0.773288812777695,0.837581326671744,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0,0,0.468565659970853,0,0,0,1.99267679560631,0.184369168541703,0.347534457872331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355123450626254,0.164254312027618,0,0,0,0.601519410909855,0.0920809889358963,0,0.364182336013434,0,0,0.0770153371044148,0,0,0.211103257785751,0,0,0,0,0,0,0,0.831076008928724,0.223874754722178,0,0,0,0,0,0,0.732555718546747,0.742585499285292,0,0.650060246036521,0,1.54673149267395,0.154048617114644,0,0,0,0,0.0852266274161009,0.267096106940212,0,0.192190067365106,0,0.10115778085555,0,0,0,0,0,0,0,0.143124886741991,0,0.632758849437452,0,0.255897791311334,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.556543525114529,0.494411622680279,0,0,0.276283915531148,0,0.511343412510774,0,0,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0.174919999992391,0,0,0.508507300585533,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404406797884062,0.802577647298789,0.468528891450678,0,0,0,0,0,0,0.31593289814244,0,0.103688191397247,0.664653872707185,0.330991955875499,0.313932918407225,0,0,0.138674673013139,0,0,0.174118413160805,0,0,0,0,0,0.0969890164884194,0,0.451961481561065,0.137041924646751,0,0,0,0.400794101257669,0,0.39961921916426,0,0,0,1.00838358591705,0,0,0.135904206073614,0,0,0.577901179803038,1.20084057741958,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.681017030557878,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0,1.02232813071253,0.226624183040251,0,0,0.258565912723101,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0.124192805882767,0,0,0,0,0.235265819698172,0,0,0,0.233713309847224,0,0.189403005275089,0.251567901752575,0.889811221596536,0,0,0,0,0,0,0.155262956876259,0,0.265841714557995,0,0.300515217994437,0.380805212168795,0,0,0.107410557042488,0,0,0.400027764663154,0,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0.184105950251841,0,0,0,0.323474434190045,1.25812753484717,0,0.169732529954025,0.212574920101683,0,0,0,0,0,0.352675943690684,0,0.192687675289379,0,0,0,0,0.0691572524642179,0,0,0,0.11796972334774,0,0.231051332300676,0,0,0,0,0.40341013740704,0,0,0.655087670040387,0,0,0,0,0,0.546974809018219,0,0.496211178389294,0,0,0,0.672567444437648,0,0,0,0,0.342976018874837,0,0.0657727735628491,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0.173858272302579,0.801711364730253,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0.294450700845729,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0.4226557275834,0,0,0,0,0,0.352894871715692,0,0,0,0.286679166302903,0,0.135982980381829,0,0,0.743990036333503,0.462175628631418,0,0.252332849670158,0.546327859818478,1.14028650910293,0,0,0,0,0,0,0.829169439458779,0.103432995861895,0,0,0,0.0620747142958579,0,0,0.202117188958219,0,0,0,0,0,0.407016343054873,0,0,0,0,0.244482888365733,0,0,0,0 | |||
|short_description=p4@TNC | |||
}} |
Latest revision as of 17:13, 24 September 2015
Short description: | p4@TNC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TNC_5end |
Coexpression cluster: | C2686_Neural_Ciliary_Astrocyte_neuroblastoma_Lens_teratocarcinoma_Neurons |
Association with transcript: | -268bp_to_ENST00000350763, NM_002160_5end |
EntrezGene: | TNC |
HGNC: | 5318 |
UniProt: | P24821B4E1W8Q4LE33 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 1.22e-27 | 3 |
ciliated cell | 1.91e-27 | 3 |
ciliated epithelial cell | 1.91e-27 | 3 |
multi-ciliated epithelial cell | 1.91e-27 | 3 |
non-pigmented ciliary epithelial cell | 1.91e-27 | 3 |
oligodendrocyte | 1.26e-20 | 7 |
macroglial cell | 1.26e-20 | 7 |
astrocyte | 1.26e-20 | 7 |
oligodendrocyte precursor cell | 1.26e-20 | 7 |
neurectodermal cell | 8.50e-16 | 59 |
ectodermal cell | 1.04e-12 | 72 |
neural cell | 1.69e-11 | 25 |
glial cell (sensu Vertebrata) | 1.33e-08 | 15 |
glial cell | 1.33e-08 | 15 |
glioblast | 1.33e-08 | 15 |
glioblast (sensu Vertebrata) | 1.33e-08 | 15 |
neuron associated cell | 1.04e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 1.04e-07 | 17 |
migratory neural crest cell | 6.51e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 1.91e-27 | 3 |
ciliary body | 1.91e-27 | 3 |
atypical epithelium | 9.45e-21 | 4 |
cerebellum | 3.96e-14 | 6 |
rhombic lip | 3.96e-14 | 6 |
vasculature of eye | 4.93e-14 | 6 |
uvea | 4.93e-14 | 6 |
vasculature of head | 4.93e-14 | 6 |
pigment epithelium of eye | 3.72e-13 | 11 |
anterior segment of eyeball | 2.25e-10 | 14 |
regional part of metencephalon | 1.36e-09 | 9 |
metencephalon | 1.36e-09 | 9 |
future metencephalon | 1.36e-09 | 9 |
vasculature of organ | 6.99e-08 | 11 |
neural plate | 2.49e-07 | 82 |
presumptive neural plate | 2.49e-07 | 82 |
segmental subdivision of hindbrain | 2.62e-07 | 12 |
hindbrain | 2.62e-07 | 12 |
presumptive hindbrain | 2.62e-07 | 12 |
camera-type eye | 2.66e-07 | 20 |
simple eye | 2.66e-07 | 20 |
immature eye | 2.66e-07 | 20 |
ocular region | 2.66e-07 | 20 |
eyeball of camera-type eye | 2.66e-07 | 20 |
optic cup | 2.66e-07 | 20 |
optic vesicle | 2.66e-07 | 20 |
eye primordium | 2.66e-07 | 20 |
ectodermal placode | 5.62e-07 | 31 |
eye | 5.87e-07 | 21 |
visual system | 5.87e-07 | 21 |
neurectoderm | 6.20e-07 | 86 |
ecto-epithelium | 7.57e-07 | 104 |
segmental subdivision of nervous system | 8.86e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 9.55e-08 | 5 |
myotonic disease | 9.55e-08 | 5 |
muscle tissue disease | 9.55e-08 | 5 |
myopathy | 9.55e-08 | 5 |
muscular disease | 9.55e-08 | 5 |
myotonic dystrophy | 9.55e-08 | 5 |