FFCP PHASE1:Hg19::chr9:117880804..117880815,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3371 | |EntrezGene=3371 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5318 | |HGNC=5318 | ||
|TSSclassifier=strong | |||
|UniProt=P24821,B4E1W8,Q4LE33 | |UniProt=P24821,B4E1W8,Q4LE33 | ||
|association_with_transcript=-268bp_to_ENST00000350763,NM_002160_5end | |association_with_transcript=-268bp_to_ENST00000350763,NM_002160_5end | ||
|cluster_id=chr9:117880804..117880815,- | |||
|coexpression_cluster_id=C2686 | |coexpression_cluster_id=C2686 | ||
|description=CAGE_peak_4_at_TNC_5end | |description=CAGE_peak_4_at_TNC_5end | ||
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|ontology_enrichment_celltype=CL:0000128!1.98e-10!7;CL:0000126!1.98e-10!7;CL:0000127!1.98e-10!7;CL:0002453!1.98e-10!7;CL:0002620!1.51e-07!23;CL:0000133!2.37e-07!59;CL:0002319!2.63e-07!25 | |ontology_enrichment_celltype=CL:0000128!1.98e-10!7;CL:0000126!1.98e-10!7;CL:0000127!1.98e-10!7;CL:0002453!1.98e-10!7;CL:0002620!1.51e-07!23;CL:0000133!2.37e-07!59;CL:0002319!2.63e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0002603;1.16e-27;3!CL:0000064;2.08e-27;3!CL:0000067;2.08e-27;3!CL:0005012;2.08e-27;3!CL:0002304;2.08e-27;3!CL:0000128;1.36e-20;7!CL:0000126;1.36e-20;7!CL:0000127;1.36e-20;7!CL:0000047;4.28e-19;2!CL:0002319;1.72e-11;25!CL:0000243;1.37e-08;15!CL:0000125;1.37e-08;15!CL:0000095;1.07e-07;17 | |ontology_enrichment_celltype_v019=CL:0002603;1.16e-27;3!CL:0000064;2.08e-27;3!CL:0000067;2.08e-27;3!CL:0005012;2.08e-27;3!CL:0002304;2.08e-27;3!CL:0000128;1.36e-20;7!CL:0000126;1.36e-20;7!CL:0000127;1.36e-20;7!CL:0000047;4.28e-19;2!CL:0002319;1.72e-11;25!CL:0000243;1.37e-08;15!CL:0000125;1.37e-08;15!CL:0000095;1.07e-07;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0002603,1.22e-27,3;CL:0000064,1.91e-27,3;CL:0000067,1.91e-27,3;CL:0005012,1.91e-27,3;CL:0002304,1.91e-27,3;CL:0000128,1.26e-20,7;CL:0000126,1.26e-20,7;CL:0000127,1.26e-20,7;CL:0002453,1.26e-20,7;CL:0000133,8.50e-16,59;CL:0000221,1.04e-12,72;CL:0002319,1.69e-11,25;CL:0000243,1.33e-08,15;CL:0000125,1.33e-08,15;CL:0000030,1.33e-08,15;CL:0000339,1.33e-08,15;CL:0000095,1.04e-07,17;CL:0000123,1.04e-07,17;CL:0000333,6.51e-07,41 | |||
|ontology_enrichment_development_v019=CL:0000339;1.37e-08;15!CL:0000133;2.38e-08;59 | |ontology_enrichment_development_v019=CL:0000339;1.37e-08;15!CL:0000133;2.38e-08;59 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;8.61e-08;5!DOID:450;8.61e-08;5!DOID:66;8.61e-08;5!DOID:423;8.61e-08;5!DOID:0080000;8.61e-08;5!DOID:11722;8.61e-08;5 | |ontology_enrichment_disease_v019=DOID:17;8.61e-08;5!DOID:450;8.61e-08;5!DOID:66;8.61e-08;5!DOID:423;8.61e-08;5!DOID:0080000;8.61e-08;5!DOID:11722;8.61e-08;5 | ||
|ontology_enrichment_disease_v019_2=DOID:17,9.55e-08,5;DOID:450,9.55e-08,5;DOID:66,9.55e-08,5;DOID:423,9.55e-08,5;DOID:0080000,9.55e-08,5;DOID:11722,9.55e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0001017!5.50e-13!82;UBERON:0005743!7.48e-12!86;UBERON:0000073!2.73e-11!94;UBERON:0001016!2.73e-11!94;UBERON:0001049!1.33e-09!57;UBERON:0005068!1.33e-09!57;UBERON:0006241!1.33e-09!57;UBERON:0007135!1.33e-09!57;UBERON:0000955!3.79e-09!69;UBERON:0006238!3.79e-09!69;UBERON:0002616!6.06e-09!59;UBERON:0000924!1.12e-08!173;UBERON:0006601!1.12e-08!173;UBERON:0004121!2.87e-08!169;UBERON:0002346!3.72e-08!90;UBERON:0003075!9.82e-08!86;UBERON:0007284!9.82e-08!86;UBERON:0000033!8.09e-07!123 | |ontology_enrichment_uberon=UBERON:0001017!5.50e-13!82;UBERON:0005743!7.48e-12!86;UBERON:0000073!2.73e-11!94;UBERON:0001016!2.73e-11!94;UBERON:0001049!1.33e-09!57;UBERON:0005068!1.33e-09!57;UBERON:0006241!1.33e-09!57;UBERON:0007135!1.33e-09!57;UBERON:0000955!3.79e-09!69;UBERON:0006238!3.79e-09!69;UBERON:0002616!6.06e-09!59;UBERON:0000924!1.12e-08!173;UBERON:0006601!1.12e-08!173;UBERON:0004121!2.87e-08!169;UBERON:0002346!3.72e-08!90;UBERON:0003075!9.82e-08!86;UBERON:0007284!9.82e-08!86;UBERON:0000033!8.09e-07!123 | ||
|ontology_enrichment_uberon_v019=UBERON:0001778;2.08e-27;3!UBERON:0001775;2.08e-27;3!UBERON:0000488;1.01e-20;4!UBERON:0002037;3.86e-14;6!UBERON:0002203;5.14e-14;6!UBERON:0001768;5.14e-14;6!UBERON:0002200;5.14e-14;6!UBERON:0007625;4.21e-13;11!UBERON:0001801;2.48e-10;14!UBERON:0002680;1.34e-09;9!UBERON:0001895;1.34e-09;9!UBERON:0006876;7.15e-08;11!UBERON:0000019;1.19e-07;19!UBERON:0000047;1.19e-07;19!UBERON:0004088;1.19e-07;19!UBERON:0010230;1.19e-07;19!UBERON:0004733;2.59e-07;12!UBERON:0002028;2.59e-07;12!UBERON:0000970;2.85e-07;20!UBERON:0010371;5.95e-07;31!UBERON:0002104;6.24e-07;21!UBERON:0001456;6.24e-07;21!UBERON:0004732;8.77e-07;13 | |ontology_enrichment_uberon_v019=UBERON:0001778;2.08e-27;3!UBERON:0001775;2.08e-27;3!UBERON:0000488;1.01e-20;4!UBERON:0002037;3.86e-14;6!UBERON:0002203;5.14e-14;6!UBERON:0001768;5.14e-14;6!UBERON:0002200;5.14e-14;6!UBERON:0007625;4.21e-13;11!UBERON:0001801;2.48e-10;14!UBERON:0002680;1.34e-09;9!UBERON:0001895;1.34e-09;9!UBERON:0006876;7.15e-08;11!UBERON:0000019;1.19e-07;19!UBERON:0000047;1.19e-07;19!UBERON:0004088;1.19e-07;19!UBERON:0010230;1.19e-07;19!UBERON:0004733;2.59e-07;12!UBERON:0002028;2.59e-07;12!UBERON:0000970;2.85e-07;20!UBERON:0010371;5.95e-07;31!UBERON:0002104;6.24e-07;21!UBERON:0001456;6.24e-07;21!UBERON:0004732;8.77e-07;13 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.91e-27,3;UBERON:0001775,1.91e-27,3;UBERON:0000488,9.45e-21,4;UBERON:0002037,3.96e-14,6;UBERON:0006215,3.96e-14,6;UBERON:0002203,4.93e-14,6;UBERON:0001768,4.93e-14,6;UBERON:0002200,4.93e-14,6;UBERON:0007625,3.72e-13,11;UBERON:0001801,2.25e-10,14;UBERON:0002680,1.36e-09,9;UBERON:0001895,1.36e-09,9;UBERON:0010092,1.36e-09,9;UBERON:0006876,6.99e-08,11;UBERON:0003075,2.49e-07,82;UBERON:0007284,2.49e-07,82;UBERON:0004733,2.62e-07,12;UBERON:0002028,2.62e-07,12;UBERON:0007277,2.62e-07,12;UBERON:0000019,2.66e-07,20;UBERON:0000047,2.66e-07,20;UBERON:0010312,2.66e-07,20;UBERON:0004088,2.66e-07,20;UBERON:0010230,2.66e-07,20;UBERON:0003072,2.66e-07,20;UBERON:0004128,2.66e-07,20;UBERON:0003071,2.66e-07,20;UBERON:0005085,5.62e-07,31;UBERON:0000970,5.87e-07,21;UBERON:0002104,5.87e-07,21;UBERON:0002346,6.20e-07,86;UBERON:0010371,7.57e-07,104;UBERON:0004732,8.86e-07,13 | |||
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| ||
|short_description=p4@TNC | |short_description=p4@TNC | ||
}} | }} |
Latest revision as of 17:13, 24 September 2015
Short description: | p4@TNC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TNC_5end |
Coexpression cluster: | C2686_Neural_Ciliary_Astrocyte_neuroblastoma_Lens_teratocarcinoma_Neurons |
Association with transcript: | -268bp_to_ENST00000350763, NM_002160_5end |
EntrezGene: | TNC |
HGNC: | 5318 |
UniProt: | P24821B4E1W8Q4LE33 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 1.22e-27 | 3 |
ciliated cell | 1.91e-27 | 3 |
ciliated epithelial cell | 1.91e-27 | 3 |
multi-ciliated epithelial cell | 1.91e-27 | 3 |
non-pigmented ciliary epithelial cell | 1.91e-27 | 3 |
oligodendrocyte | 1.26e-20 | 7 |
macroglial cell | 1.26e-20 | 7 |
astrocyte | 1.26e-20 | 7 |
oligodendrocyte precursor cell | 1.26e-20 | 7 |
neurectodermal cell | 8.50e-16 | 59 |
ectodermal cell | 1.04e-12 | 72 |
neural cell | 1.69e-11 | 25 |
glial cell (sensu Vertebrata) | 1.33e-08 | 15 |
glial cell | 1.33e-08 | 15 |
glioblast | 1.33e-08 | 15 |
glioblast (sensu Vertebrata) | 1.33e-08 | 15 |
neuron associated cell | 1.04e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 1.04e-07 | 17 |
migratory neural crest cell | 6.51e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 1.91e-27 | 3 |
ciliary body | 1.91e-27 | 3 |
atypical epithelium | 9.45e-21 | 4 |
cerebellum | 3.96e-14 | 6 |
rhombic lip | 3.96e-14 | 6 |
vasculature of eye | 4.93e-14 | 6 |
uvea | 4.93e-14 | 6 |
vasculature of head | 4.93e-14 | 6 |
pigment epithelium of eye | 3.72e-13 | 11 |
anterior segment of eyeball | 2.25e-10 | 14 |
regional part of metencephalon | 1.36e-09 | 9 |
metencephalon | 1.36e-09 | 9 |
future metencephalon | 1.36e-09 | 9 |
vasculature of organ | 6.99e-08 | 11 |
neural plate | 2.49e-07 | 82 |
presumptive neural plate | 2.49e-07 | 82 |
segmental subdivision of hindbrain | 2.62e-07 | 12 |
hindbrain | 2.62e-07 | 12 |
presumptive hindbrain | 2.62e-07 | 12 |
camera-type eye | 2.66e-07 | 20 |
simple eye | 2.66e-07 | 20 |
immature eye | 2.66e-07 | 20 |
ocular region | 2.66e-07 | 20 |
eyeball of camera-type eye | 2.66e-07 | 20 |
optic cup | 2.66e-07 | 20 |
optic vesicle | 2.66e-07 | 20 |
eye primordium | 2.66e-07 | 20 |
ectodermal placode | 5.62e-07 | 31 |
eye | 5.87e-07 | 21 |
visual system | 5.87e-07 | 21 |
neurectoderm | 6.20e-07 | 86 |
ecto-epithelium | 7.57e-07 | 104 |
segmental subdivision of nervous system | 8.86e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 9.55e-08 | 5 |
myotonic disease | 9.55e-08 | 5 |
muscle tissue disease | 9.55e-08 | 5 |
myopathy | 9.55e-08 | 5 |
muscular disease | 9.55e-08 | 5 |
myotonic dystrophy | 9.55e-08 | 5 |