FFCP PHASE1:Hg19::chr9:117880477..117880491,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:117880477..117880491,-
|short_description=p2@TNC
|description=CAGE_peak_2_at_TNC_5end
|association_with_transcript=0bp_to_ENST00000340094,ENST00000345230,E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3371 | |EntrezGene=3371 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5318 | |HGNC=5318 | ||
|TSSclassifier=strong | |||
|UniProt=P24821,E7EVS8,F5H5D6 | |UniProt=P24821,E7EVS8,F5H5D6 | ||
|association_with_transcript=0bp_to_ENST00000340094,ENST00000345230,ENST00000346706,ENST00000442945,ENST00000534839,ENST00000535648,uc004bjj.3_5end | |||
|cluster_id=chr9:117880477..117880491,- | |||
|coexpression_cluster_id=C864 | |||
|description=CAGE_peak_2_at_TNC_5end | |||
|id=chr9:117880477..117880491,- | |||
|ontology_enrichment_celltype=CL:0000055!1.15e-19!180;CL:0000057!1.48e-10!75;CL:0002620!1.40e-08!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;8.00e-09;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,6.74e-09,23;CL:0000057,8.23e-09,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;6.35e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.95e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!4.33e-14!365;UBERON:0000481!5.59e-13!347;UBERON:0000468!1.21e-12!659;UBERON:0003102!9.62e-12!95;UBERON:0000486!2.51e-10!82;UBERON:0000914!9.00e-10!83;UBERON:0002329!9.00e-10!83;UBERON:0003077!9.00e-10!83;UBERON:0003059!9.00e-10!83;UBERON:0007282!9.00e-10!83;UBERON:0009618!9.00e-10!83;UBERON:0007285!9.00e-10!83;UBERON:0000467!2.71e-09!625;UBERON:0000922!4.21e-09!612;UBERON:0000480!4.23e-09!626;UBERON:0002050!1.02e-08!605;UBERON:0005423!1.02e-08!605;UBERON:0000923!2.09e-08!604;UBERON:0005291!2.09e-08!604;UBERON:0006598!2.09e-08!604;UBERON:0002532!2.09e-08!604;UBERON:0005256!3.98e-08!143;UBERON:0003104!7.91e-08!238;UBERON:0009142!7.91e-08!238;UBERON:0002199!2.00e-07!45;UBERON:0002416!2.00e-07!45;UBERON:0002100!2.30e-07!216;UBERON:0004290!2.63e-07!70;UBERON:0002097!8.05e-07!40 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,2.47e-13,99;UBERON:0000486,1.14e-10,83;UBERON:0002199,4.06e-08,46;UBERON:0002416,4.06e-08,46;UBERON:0007524,1.33e-07,73;UBERON:0002329,1.42e-07,71;UBERON:0003059,1.42e-07,71;UBERON:0007282,1.42e-07,71;UBERON:0004290,1.42e-07,71;UBERON:0009618,1.42e-07,71;UBERON:0002097,2.52e-07,41;UBERON:0003077,2.94e-07,72;UBERON:0007285,2.94e-07,72;UBERON:0007503,6.65e-07,78 | |||
|phase1_expression=2.36181893051724,7.27941781229343,0.422863212287913,6.00439790118782,0.446961094427288,2.61701557230111,5.06599756336621,1.89515962028049,0,6.14334841253772,5.58240934377942,7.20856528029568,5.53910654279752,2.22779435328084,2.65117900582333,8.74022690387308,10.2458069764076,11.684961446198,9.75865597581014,37.1825595391899,11.2200380184339,57.3622140304901,14.0255633694218,23.8161499626819,13.4330624366439,0,0,0,0,0,0.154816123316076,1.83884244895785,4.51808878167375,9.61360426433648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,8.67453965722959,5.0133791063589,10.8634889220618,31.0161519349929,48.6634870302636,28.7385844178766,25.2771513107323,11.6820264971858,3.99486180268024,6.19301990097322,7.04490441290416,0,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.54141078213801,3.97577561356255,0.12663051166458,2.51577443545116,6.3104056564739,2.12801029319014,4.48542080113846,4.2699598291882,7.15335890409764,0.933633106199299,0.67355336034844,0,0.454072282934794,0.576175924479999,5.62371436401112,6.55536161343673,0,3.43731965269142,3.87533845524424,5.6655530528846,5.47758146138769,1.83738754129404,3.0708579327942,3.20309921644873,2.37600571456411,2.96720315134268,1.82032272387605,0.718618141816238,3.36672227908132,8.00758527180571,2.77064115484183,8.34057479673592,6.43624371177941,4.8076178850111,0.113432183160021,33.9046411451949,10.8914268297469,16.7426201916054,38.4116602988035,9.17167510222106,20.868883743696,6.51408997160564,33.7552664482532,15.2976098103082,32.8163906517349,10.4016385465798,0.161646056818812,53.9614580625254,8.46317625112178,10.3431961309397,5.41130388857231,12.0008293059967,5.44928731239107,0.243947412259191,0.530119073285941,1.97529702878181,1.55491582523056,1.26160425437814,2.18986415445498,10.9514672630871,7.07565032012174,2.76269842704961,0,0,0.236613600079688,0.505754070234305,0.241011029883482,0.441175890929576,0.217879444092406,0.237270619111097,0.134831308160164,0,0.38474715694639,0,0,0.4115740113314,0,0,0,0,0,0,3.60292401626904,4.39001141634502,0,2.01057944823262,4.72201070308501,4.23550796903422,1.03993478527958,4.3299402607582,8.11512834825538,4.3441216867254,0,0,0,0,0,0.246217006087397,0,0.148631162288728,3.74935335947108,13.4385702559088,7.51408015384648,2.7763142037883,4.06887513919547,3.06706143332169,0,0,0,0,0.12624243342638,0,0,0,0,0.514137463516618,0,0,1.23344192779897,0,0.80672114403045,5.8172272091,0,7.607724773004,6.11657668145202,4.16029747645464,3.85811061393213,1.41849132023278,6.66055447540248,0.142977993658148,4.34097284313154,0,5.21177894869976,0,0.791951872933429,6.63166629531089,3.48613383440118,10.2972180917519,0,0,0,2.63587341040741,1.14861935834114,19.9691667057006,1.01346914667305,4.52047909610843,1.96967059563885,0,0,0,0,40.9092344998166,24.7265722329481,10.8260433788877,9.21339459338918,8.93114252314428,0,0,0,3.6807447515742,2.00068208423871,1.08506009479894,3.11956292296211,6.24501460790066,1.26161932027148,4.21709093973768,5.41702979509894,0,4.1389228517002,21.9194447516694,14.0120568091694,7.29822361531896,0.587403472388222,0.686286847621712,0,0,0,0.909382714338778,0,11.7932214398575,0.744323423456331,7.366174717827,8.70046292742528,0.256278298511402,1.53512174720011,0.804269605718038,0,17.1172760120948,14.027376299737,11.5799289979471,12.4621063004069,11.9696689813758,0,11.0278558666807,7.5506410927435,3.4444334449382,2.1850940160806,0.655622074797121,6.76799419361118,2.23344477602803,4.70609861506113,8.76835347919564,6.01644284689391,0,0.170093705276516,1.51141141271498,0,1.08378575017541,1.50506932156456,11.9791848331168,16.6215201785745,12.0892367549976,0,0,0.256450125116389,0.984043937099117,1.30151357865721,0.309123034943167,15.5668090191184,15.7593144848323,10.3367796839311,8.45078319847478,6.42735719376638,18.3674364755032,3.85121542786611,3.22357716924872,1.7918754422989,1.71872391789238,1.45016693914229,4.09087811597284,21.9018807690974,12.8922233981563,16.1439656586689,6.38063562472921,16.4887182794546,0.464845549297286,13.8517432605482,4.8792608911242,4.00443654228915,0.532306030317022,8.69932992075073,4.44778125849408,1.71749864090389,0,0,0,2.303080121802,3.85145089230528,4.13664222303718,2.35484592059769,0.539617372749944,1.09814811894422,1.53156123049392,2.02182481573316,0,3.37006764991185,1.95053495635836,2.19342140668156,8.45201174054043,3.13949796238367,1.55545975149084,5.65040583101214,6.61638412255349,5.97095077717098,3.06915619677634,1.73632660280006,1.9676842561399,5.2756698010303,5.5768229657955,5.07052084558035,2.58140433967293,1.67023369722306,2.85336841185,7.80474340955315,10.1331664942879,8.89096210991735,1.51789269506286,0.349934720244983,5.86954887625624,4.02181365321472,9.80018863751903,0.470719003883896,11.193139689452,8.42357378338128,12.8594744525636,5.97280840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| ||
|short_description=p2@TNC | |||
}} | }} |
Latest revision as of 17:10, 24 September 2015
Short description: | p2@TNC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TNC_5end |
Coexpression cluster: | C864_Chondrocyte_peripheral_Fibroblast_Adipocyte_mesenchymal_Neural_neuroectodermal |
Association with transcript: | 0bp_to_ENST00000340094, ENST00000345230, ENST00000346706, ENST00000442945, ENST00000534839, ENST00000535648, uc004bjj.3_5end |
EntrezGene: | TNC |
HGNC: | 5318 |
UniProt: | P24821E7EVS8F5H5D6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 6.74e-09 | 23 |
fibroblast | 8.23e-09 | 76 |
Ontology term | p-value | n |
---|---|---|
surface structure | 2.47e-13 | 99 |
multilaminar epithelium | 1.14e-10 | 83 |
integument | 4.06e-08 | 46 |
integumental system | 4.06e-08 | 46 |
dense mesenchyme tissue | 1.33e-07 | 73 |
somite | 1.42e-07 | 71 |
presomitic mesoderm | 1.42e-07 | 71 |
presumptive segmental plate | 1.42e-07 | 71 |
dermomyotome | 1.42e-07 | 71 |
trunk paraxial mesoderm | 1.42e-07 | 71 |
skin of body | 2.52e-07 | 41 |
paraxial mesoderm | 2.94e-07 | 72 |
presumptive paraxial mesoderm | 2.94e-07 | 72 |
epithelial vesicle | 6.65e-07 | 78 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.95e-07 | 14 |