FFCP PHASE1:Hg19::chr6:129811829..129811874,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3908 | |EntrezGene=3908 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6482 | |HGNC=6482 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=1bp_to_ENST00000498257_5end | |association_with_transcript=1bp_to_ENST00000498257_5end | ||
|cluster_id=chr6:129811829..129811874,+ | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_3_at_LAMA2_5end | |description=CAGE_peak_3_at_LAMA2_5end | ||
|id=chr6:129811829..129811874,+ | |id=chr6:129811829..129811874,+ | ||
|ontology_enrichment_celltype=CL:0000012!1.11e-31!682;CL:0000548!6.25e-31!679;CL:0000004!6.25e-31!679;CL:0000255!6.25e-31!679;CL:0000063!3.21e-27!578;CL:0002057!5.07e-27!42;CL:0000860!1.50e-26!45;CL:0000003!6.08e-25!722;CL:0000144!7.30e-25!625;CL:0002371!2.98e-23!591;CL:0000557!7.27e-22!71;CL:0000766!1.08e-21!76;CL:0002009!5.71e-20!65;CL:0002194!8.58e-20!63;CL:0000576!8.58e-20!63;CL:0000040!8.58e-20!63;CL:0000559!8.58e-20!63;CL:0000839!1.04e-19!70;CL:0000738!1.06e-16!140;CL:0002031!1.75e-15!124;CL:0002087!4.36e-15!119;CL:0000723!1.31e-12!436;CL:0000048!1.98e-12!430;CL:0000134!4.04e-12!358;CL:0000034!5.47e-12!444;CL:0000763!6.44e-12!112;CL:0000049!6.44e-12!112;CL:0000037!1.35e-11!172;CL:0000566!1.35e-11!172;CL:0000219!2.30e-11!390;CL:0002320!2.80e-11!365;CL:0002032!1.35e-10!165;CL:0000837!1.35e-10!165;CL:0000988!2.35e-10!182 | |ontology_enrichment_celltype=CL:0000012!1.11e-31!682;CL:0000548!6.25e-31!679;CL:0000004!6.25e-31!679;CL:0000255!6.25e-31!679;CL:0000063!3.21e-27!578;CL:0002057!5.07e-27!42;CL:0000860!1.50e-26!45;CL:0000003!6.08e-25!722;CL:0000144!7.30e-25!625;CL:0002371!2.98e-23!591;CL:0000557!7.27e-22!71;CL:0000766!1.08e-21!76;CL:0002009!5.71e-20!65;CL:0002194!8.58e-20!63;CL:0000576!8.58e-20!63;CL:0000040!8.58e-20!63;CL:0000559!8.58e-20!63;CL:0000839!1.04e-19!70;CL:0000738!1.06e-16!140;CL:0002031!1.75e-15!124;CL:0002087!4.36e-15!119;CL:0000723!1.31e-12!436;CL:0000048!1.98e-12!430;CL:0000134!4.04e-12!358;CL:0000034!5.47e-12!444;CL:0000763!6.44e-12!112;CL:0000049!6.44e-12!112;CL:0000037!1.35e-11!172;CL:0000566!1.35e-11!172;CL:0000219!2.30e-11!390;CL:0002320!2.80e-11!365;CL:0002032!1.35e-10!165;CL:0000837!1.35e-10!165;CL:0000988!2.35e-10!182 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.21e-27;33!CL:0002057;2.21e-27;33!CL:0000576;1.80e-20;48!CL:0000473;1.63e-18;39!CL:0000234;1.63e-18;39!CL:0000766;5.74e-14;69!CL:0002393;6.37e-07;6!CL:0002397;6.37e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.50e-37,42;CL:0002057,7.50e-37,42;CL:0000473,8.06e-31,48;CL:0000234,8.06e-31,48;CL:0000766,1.94e-27,72;CL:0000557,6.16e-26,67;CL:0002194,7.15e-25,59;CL:0000576,7.15e-25,59;CL:0000040,7.15e-25,59;CL:0000559,7.15e-25,59;CL:0002009,7.72e-25,61;CL:0000839,3.00e-24,66;CL:0000738,1.54e-17,136;CL:0002031,3.44e-16,120;CL:0002087,5.08e-16,115;CL:0000763,8.16e-15,108;CL:0000049,8.16e-15,108;CL:0000037,5.33e-12,168;CL:0002032,1.62e-11,161;CL:0000837,1.62e-11,161;CL:0000988,1.21e-10,177;CL:0002393,2.43e-08,9;CL:0002397,2.43e-08,9;CL:0000134,6.88e-08,354;CL:0002320,1.23e-07,361;CL:0000219,1.43e-07,386;CL:0000723,6.35e-07,433;CL:0000048,7.24e-07,427;CL:0000034,9.88e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.11e-26;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1749;7.42e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,6.22e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002371!8.88e-21!80;UBERON:0001474!5.74e-19!86;UBERON:0004765!4.71e-16!101;UBERON:0001434!4.71e-16!101;UBERON:0002390!5.27e-14!102;UBERON:0003061!5.27e-14!102;UBERON:0002193!5.70e-13!112;UBERON:0002384!3.72e-11!375;UBERON:0002405!4.94e-11!115;UBERON:0002204!1.29e-10!167;UBERON:0003081!5.57e-07!216 | |ontology_enrichment_uberon=UBERON:0002371!8.88e-21!80;UBERON:0001474!5.74e-19!86;UBERON:0004765!4.71e-16!101;UBERON:0001434!4.71e-16!101;UBERON:0002390!5.27e-14!102;UBERON:0003061!5.27e-14!102;UBERON:0002193!5.70e-13!112;UBERON:0002384!3.72e-11!375;UBERON:0002405!4.94e-11!115;UBERON:0002204!1.29e-10!167;UBERON:0003081!5.57e-07!216 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.92e-24,76;UBERON:0001474,2.21e-21,82;UBERON:0004765,1.25e-20,90;UBERON:0002405,1.18e-17,93;UBERON:0001434,5.02e-17,100;UBERON:0002390,1.41e-15,98;UBERON:0003061,1.41e-15,98;UBERON:0002193,7.76e-14,108;UBERON:0002204,2.55e-10,167;UBERON:0003081,1.56e-08,203;UBERON:0002384,1.48e-07,371 | |||
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| ||
|short_description=p3@LAMA2 | |short_description=p3@LAMA2 | ||
}} | }} |
Latest revision as of 16:39, 24 September 2015
Short description: | p3@LAMA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LAMA2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 1bp_to_ENST00000498257_5end |
EntrezGene: | LAMA2 |
HGNC: | 6482 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.50e-37 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.50e-37 | 42 |
defensive cell | 8.06e-31 | 48 |
phagocyte | 8.06e-31 | 48 |
myeloid leukocyte | 1.94e-27 | 72 |
granulocyte monocyte progenitor cell | 6.16e-26 | 67 |
monopoietic cell | 7.15e-25 | 59 |
monocyte | 7.15e-25 | 59 |
monoblast | 7.15e-25 | 59 |
promonocyte | 7.15e-25 | 59 |
macrophage dendritic cell progenitor | 7.72e-25 | 61 |
myeloid lineage restricted progenitor cell | 3.00e-24 | 66 |
leukocyte | 1.54e-17 | 136 |
hematopoietic lineage restricted progenitor cell | 3.44e-16 | 120 |
nongranular leukocyte | 5.08e-16 | 115 |
myeloid cell | 8.16e-15 | 108 |
common myeloid progenitor | 8.16e-15 | 108 |
hematopoietic stem cell | 5.33e-12 | 168 |
hematopoietic oligopotent progenitor cell | 1.62e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.62e-11 | 161 |
hematopoietic cell | 1.21e-10 | 177 |
intermediate monocyte | 2.43e-08 | 9 |
CD14-positive, CD16-positive monocyte | 2.43e-08 | 9 |
mesenchymal cell | 6.88e-08 | 354 |
connective tissue cell | 1.23e-07 | 361 |
motile cell | 1.43e-07 | 386 |
somatic stem cell | 6.35e-07 | 433 |
multi fate stem cell | 7.24e-07 | 427 |
stem cell | 9.88e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.92e-24 | 76 |
bone element | 2.21e-21 | 82 |
skeletal element | 1.25e-20 | 90 |
immune system | 1.18e-17 | 93 |
skeletal system | 5.02e-17 | 100 |
hematopoietic system | 1.41e-15 | 98 |
blood island | 1.41e-15 | 98 |
hemolymphoid system | 7.76e-14 | 108 |
musculoskeletal system | 2.55e-10 | 167 |
lateral plate mesoderm | 1.56e-08 | 203 |
connective tissue | 1.48e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 6.22e-07 | 14 |