FFCP PHASE1:Hg19::chr4:110723340..110723356,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:110723340..110723356,- to FFCP PHASE1:Hg19::chr4:110723340..110723356,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3426 | |EntrezGene=3426 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5394 | |HGNC=5394 | ||
|TSSclassifier=strong | |||
|UniProt=P05156,A8K3L0 | |UniProt=P05156,A8K3L0 | ||
|association_with_transcript=-5bp_to_ENST00000394634,NM_000204,uc003hzr.3,uc003hzs.3,uc011cft.1_5end | |||
|cluster_id=chr4:110723340..110723356,- | |||
|coexpression_cluster_id=C4359 | |||
|description=CAGE_peak_5_at_CFI_5end | |||
|id=chr4:110723340..110723356,- | |||
|ontology_enrichment_celltype=CL:0002139!1.62e-10!24;CL:0000071!1.28e-07!18;CL:0002546!1.28e-07!18;CL:0000213!1.92e-07!57;CL:0000215!1.92e-07!57;CL:0002078!2.68e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.63e-15;24!CL:0000071;2.60e-09;18!CL:0000115;5.83e-09;36!CL:0002138;4.35e-08;6!CL:0000213;1.60e-07;58!CL:0000215;1.60e-07;58!CL:0002543;2.56e-07;6!CL:0002078;4.43e-07;45!CL:0000306;5.55e-07;4!CL:0002222;5.55e-07;4!CL:0002224;5.55e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,4.65e-15,24;CL:0000213,9.54e-12,58;CL:0000215,9.54e-12,58;CL:0000115,6.21e-11,36;CL:0002078,3.84e-10,45;CL:0000071,3.05e-09,18;CL:0002546,3.05e-09,18;CL:0005020,4.77e-08,6;CL:0002138,4.77e-08,6;CL:0005022,4.77e-08,6;CL:0002543,2.07e-07,6;CL:0000306,4.02e-07,4;CL:0002222,4.02e-07,4;CL:0002224,4.02e-07,4 | |||
|ontology_enrichment_development_v019=CL:0002546;2.60e-09;18!CL:0005022;4.35e-08;6 | |||
|ontology_enrichment_disease=DOID:2394!7.04e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.37e-16;14!DOID:193;1.62e-07;29!DOID:120;6.98e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.30e-16,14;DOID:193,1.37e-07,29;DOID:120,5.88e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0000477!2.40e-12!286;UBERON:0004111!2.01e-11!241;UBERON:0000119!3.05e-11!312;UBERON:0000483!3.91e-11!309;UBERON:0007023!5.01e-11!115;UBERON:0000025!1.88e-10!194;UBERON:0000467!4.13e-08!625;UBERON:0000480!5.38e-08!626;UBERON:0003914!9.40e-08!118;UBERON:0006914!9.53e-08!25;UBERON:0001986!1.28e-07!18;UBERON:0004638!1.28e-07!18;UBERON:0004852!1.28e-07!18;UBERON:0000487!1.72e-07!22;UBERON:0004872!2.46e-07!84;UBERON:0000468!3.21e-07!659;UBERON:0003075!8.72e-07!86;UBERON:0007284!8.72e-07!86;UBERON:0001009!9.91e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0000487;4.17e-10;22!UBERON:0006914;5.00e-10;25!UBERON:0000992;2.21e-09;13!UBERON:0004638;2.60e-09;18!UBERON:0001986;2.60e-09;18!UBERON:0004852;2.60e-09;18!UBERON:0002118;7.20e-09;5!UBERON:0000490;9.41e-09;33!UBERON:0010077;5.55e-07;4!UBERON:0005389;5.55e-07;4!UBERON:0000484;5.55e-07;4!UBERON:0000965;5.55e-07;4!UBERON:0001803;5.55e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000487,3.91e-10,22;UBERON:0006914,4.89e-10,25;UBERON:0000992,1.90e-09,13;UBERON:0004638,3.05e-09,18;UBERON:0001986,3.05e-09,18;UBERON:0004852,3.05e-09,18;UBERON:0002118,7.49e-09,5;UBERON:0002049,1.61e-08,78;UBERON:0007798,1.61e-08,78;UBERON:0004872,4.72e-08,83;UBERON:0004535,9.65e-08,109;UBERON:0001009,2.55e-07,112;UBERON:0000055,2.77e-07,68;UBERON:0010077,4.02e-07,4;UBERON:0005389,4.02e-07,4;UBERON:0000484,4.02e-07,4;UBERON:0002546,4.02e-07,4;UBERON:0000965,4.02e-07,4;UBERON:0001803,4.02e-07,4;UBERON:0003073,4.02e-07,4;UBERON:0005426,4.02e-07,4;UBERON:0003914,8.60e-07,117 | |||
|phase1_expression=0,0.214100523890983,0.845726424575827,0,0.893922188854576,0.872338524100369,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0.123121058076788,0,0.313454721478088,2.0036519099174,0.547497700291537,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,1.34140171940727,0.767175371061182,1.44575660953827,1.00267582127178,1.44846518960824,0.795285947051099,1.45990461090791,1.41802225746102,1.77383517970051,0.43917392846563,0.654895377488563,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0.79504962946682,0,1.38856200643038,1.13061588384802,0,0.550236083880135,0.208994966536811,8.78616981175718,7.47109151642091,9.70689777017544,2.41697590265488,3.04108842287405,0.976248230192678,3.30896772311282,2.43042584364528,4.46498641420399,4.04152870727106,2.59006405111641,0,1.89853131913626,2.01521918323448,0,0,0,0,0,0.662045904066094,4.87622255272983,1.06400514659507,1.12135520028461,0,0,1.55605517699883,0,0.817309515567294,0.151357427644931,2.30470369792,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0.179389635688862,0,0,0.300091096084402,0,0.257640540045629,0,0,0,0,0.184099797284599,0.323292113637624,0.355009592516614,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,0,0,0,0,0,1.77236972004421,0,0,1.71567810298526,0,0,0,0,0,0,5.77325368101093,1.85488647960123,2.7003999674239,2.16549671641611,0,2.47330397904978,0,0,0,0,0,0,0.335964256397719,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.1466765716419,0.129271715757778,0,0,0,0,0,0,0,0.428933980974443,0,0,0,0.710783897485092,0,7.53598442648965,2.61460037580088,5.09862255028491,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,2.54094624222463,1.30139853857622,0,0.335032530668698,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,2.94720043288112,0,1.28683136914886,0,0,0.177561725313127,0.164254312027618,1.03850885836724,0.116210378459959,0,0,0,0.34444334449382,0,0.262248829918848,0,1.00119938235739,0,0,1.47772280450026,0,0.170093705276516,1.29549549661284,0,0,1.00337954770971,0.254876273045038,0.831076008928724,0,0,0,0.256450125116389,0,0,1.13345112812495,3.75434805755208,4.1254749960294,0,0,1.6068392984416,0.290012154876366,0.924291702687866,0.15350367472613,0,0.751941714077915,0.290033387828457,0.255679882248303,0.890320356467374,0,0,0,0,0,4.7221852024596,0,0,0,0,0,0,0,0,0.571890581771475,0,0,0.95460974377781,0,0.179872457583315,1.37268514868027,0.353437207037059,0,0,0,0,0,0,0.272999822815972,0.282810863907425,0,0.551365343546124,0,0,0,0,0,0.6196469961995,0,0.286822704408103,0,0,0.709522128141196,0.422215270595328,2.30506425071931,0,0,0,0,0,1.22386941009813,0,0,0,1.37834040124176,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0.635020748171649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,1.90460633053462,0,0.111443384277478,0,0,0,0,0.994147647766298,0.562677665642051,0.445234820091624,1.31843099381408,0.211125408127993,0.597743964753209,1.10513566212459,0,0.409074730008619,0,0,0,0.179021174675609,0,0.887790650732402,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,2.79679015322043,0,0,0,0,0.885741385813839,0,0,0.110579259931225,0,0.219385397153973,0.544692317594951,0,0.846452843541768,0.113942055847001,0,0,0,0.31900115973192,0.183195186803725,0,0,0.156980256395025,0.498635045700469,0,0,0,0,0,0,0.163232808159148,0,0,0,0.265372693510018,3.05515072466813,0,0.123563938946503,0.208843899010911,0.202203398942031,2.40773294189637,0,0,0.978323094660449,0,1.57833761139756,6.04953580243319,0.30607276163049,0.568679216656392,0,0,0,0,0,0,0.853828638089378,0.138674673013139,0,0,0,4.19344003780872,0,0,0,0,0.581934098930517,0,3.61569185248852,0,0,0.316553979779393,0,0.400794101257669,1.28071796843612,0.39961921916426,0,0,0,0,3.47907099583211,0,0.543616824294456,0.418411385249333,0.509991088181609,0.577901179803038,0,0.273810757783986,0,5.15718529703949,0,3.6306712165393,2.7499250881402,1.43574604915363,0.599037001496973,0,0.446342914883745,0.470284307407084,3.24269895188163,0,0.0787831823072236,0.0824158583811665,0.13480708770837,0.393709926058995,0,0,0,0,0,0,0.899895566206002,0.77380195455795,0.121499113316049,0,1.49730843868477,1.94081976099493,0,0,0,3.57347663186684,0,0,0,0,0,1.19730191562487,0,0.340776043570843,1.69968137280189,0.439656701034247,0,0.387848869084652,0,0.171086837884329,0,1.49502377594773,1.72924735609633,2.07119527673598,1.48849806543585,0,0,0.638341257770182,0,0.2506898940227,0,0.655745261419609,0,0,0.244052529803926,0.625954653532499,0.573409195690071,0.221858103073705,0.248385611765534,0,0,3.63957882099955,0,0,0,0,0.149254802886874,0.233713309847224,0.554805861502613,0.378806010550178,0.754703705257725,5.33886732957922,0.457680136793847,2.11723293268535,0.777186002913902,0.295710299979268,3.02663857611035,0.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| 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| ||
|short_description=p5@CFI | |||
}} | }} |
Latest revision as of 16:24, 24 September 2015
Short description: | p5@CFI |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CFI_5end |
Coexpression cluster: | C4359_mesenchymal_Mesothelial_Endothelial_Cardiac_mesothelioma_myeloma_anaplastic |
Association with transcript: | -5bp_to_ENST00000394634, NM_000204, uc003hzr.3, uc003hzs.3, uc011cft.1_5end |
EntrezGene: | CFI |
HGNC: | 5394 |
UniProt: | P05156A8K3L0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 4.65e-15 | 24 |
lining cell | 9.54e-12 | 58 |
barrier cell | 9.54e-12 | 58 |
endothelial cell | 6.21e-11 | 36 |
meso-epithelial cell | 3.84e-10 | 45 |
blood vessel endothelial cell | 3.05e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.05e-09 | 18 |
lymphangioblast | 4.77e-08 | 6 |
endothelial cell of lymphatic vessel | 4.77e-08 | 6 |
vascular lymphangioblast | 4.77e-08 | 6 |
vein endothelial cell | 2.07e-07 | 6 |
crystallin accumulating cell | 4.02e-07 | 4 |
vertebrate lens cell | 4.02e-07 | 4 |
lens epithelial cell | 4.02e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
simple squamous epithelium | 3.91e-10 | 22 |
squamous epithelium | 4.89e-10 | 25 |
female gonad | 1.90e-09 | 13 |
blood vessel endothelium | 3.05e-09 | 18 |
endothelium | 3.05e-09 | 18 |
cardiovascular system endothelium | 3.05e-09 | 18 |
right ovary | 7.49e-09 | 5 |
vasculature | 1.61e-08 | 78 |
vascular system | 1.61e-08 | 78 |
splanchnic layer of lateral plate mesoderm | 4.72e-08 | 83 |
cardiovascular system | 9.65e-08 | 109 |
circulatory system | 2.55e-07 | 112 |
vessel | 2.77e-07 | 68 |
cuboidal epithelium | 4.02e-07 | 4 |
transparent eye structure | 4.02e-07 | 4 |
simple cuboidal epithelium | 4.02e-07 | 4 |
cranial placode | 4.02e-07 | 4 |
lens of camera-type eye | 4.02e-07 | 4 |
epithelium of lens | 4.02e-07 | 4 |
lens placode | 4.02e-07 | 4 |
lens vesicle | 4.02e-07 | 4 |
epithelial tube | 8.60e-07 | 117 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.30e-16 | 14 |
reproductive organ cancer | 1.37e-07 | 29 |
female reproductive organ cancer | 5.88e-07 | 27 |