FFCP PHASE1:Hg19::chr4:110723224..110723236,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:110723224..110723236,- to FFCP PHASE1:Hg19::chr4:110723224..110723236,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3426 | |EntrezGene=3426 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5394 | |HGNC=5394 | ||
|TSSclassifier=strong | |||
|UniProt=E7ETH0 | |UniProt=E7ETH0 | ||
|association_with_transcript=-17bp_to_ENST00000394635_5end | |||
|cluster_id=chr4:110723224..110723236,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_4_at_CFI_5end | |||
|id=chr4:110723224..110723236,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000306;6.39e-10;4!CL:0002222;6.39e-10;4!CL:0002224;6.39e-10;4!CL:0000064;5.26e-08;3!CL:0000067;5.26e-08;3!CL:0005012;5.26e-08;3!CL:0002304;5.26e-08;3!CL:0002605;3.21e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,5.20e-10,4;CL:0002222,5.20e-10,4;CL:0002224,5.20e-10,4;CL:0000064,5.30e-08,3;CL:0000067,5.30e-08,3;CL:0005012,5.30e-08,3;CL:0002304,5.30e-08,3;CL:0002605,4.31e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.06e-17!115;UBERON:0003075!1.85e-13!86;UBERON:0007284!1.85e-13!86;UBERON:0000483!2.04e-12!309;UBERON:0000119!2.22e-12!312;UBERON:0002346!3.99e-12!90;UBERON:0000477!4.84e-11!286;UBERON:0004111!1.34e-10!241;UBERON:0000481!2.91e-09!347;UBERON:0000025!1.11e-08!194;UBERON:0000467!4.30e-08!625;UBERON:0000480!5.40e-08!626;UBERON:0001049!9.14e-08!57;UBERON:0005068!9.14e-08!57;UBERON:0006241!9.14e-08!57;UBERON:0007135!9.14e-08!57;UBERON:0005743!1.48e-07!86;UBERON:0007625!1.51e-07!11;UBERON:0003103!2.10e-07!69;UBERON:0001017!3.51e-07!82;UBERON:0003056!3.73e-07!61;UBERON:0002368!5.23e-07!35;UBERON:0000073!7.22e-07!94;UBERON:0001016!7.22e-07!94;UBERON:0005172!8.99e-07!55;UBERON:0005173!8.99e-07!55 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;6.24e-16;11!UBERON:0000019;3.55e-10;19!UBERON:0000047;3.55e-10;19!UBERON:0004088;3.55e-10;19!UBERON:0010230;3.55e-10;19!UBERON:0000488;3.63e-10;4!UBERON:0010077;6.39e-10;4!UBERON:0005389;6.39e-10;4!UBERON:0000484;6.39e-10;4!UBERON:0000965;6.39e-10;4!UBERON:0001803;6.39e-10;4!UBERON:0001801;9.19e-10;14!UBERON:0000970;1.49e-09;20!UBERON:0002104;5.46e-09;21!UBERON:0001456;5.46e-09;21!UBERON:0000020;5.18e-08;23!UBERON:0001778;5.26e-08;3!UBERON:0001775;5.26e-08;3!UBERON:0001032;1.38e-07;24!UBERON:0004456;1.38e-07;24!UBERON:0004151;3.21e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,4.76e-16,11;UBERON:0000488,3.79e-10,4;UBERON:0010077,5.20e-10,4;UBERON:0005389,5.20e-10,4;UBERON:0000484,5.20e-10,4;UBERON:0002546,5.20e-10,4;UBERON:0000965,5.20e-10,4;UBERON:0001803,5.20e-10,4;UBERON:0003073,5.20e-10,4;UBERON:0005426,5.20e-10,4;UBERON:0001801,8.42e-10,14;UBERON:0000019,1.11e-09,20;UBERON:0000047,1.11e-09,20;UBERON:0010312,1.11e-09,20;UBERON:0004088,1.11e-09,20;UBERON:0010230,1.11e-09,20;UBERON:0003072,1.11e-09,20;UBERON:0004128,1.11e-09,20;UBERON:0003071,1.11e-09,20;UBERON:0000970,4.11e-09,21;UBERON:0002104,4.11e-09,21;UBERON:0001456,1.36e-08,22;UBERON:0001048,3.12e-08,160;UBERON:0001778,5.30e-08,3;UBERON:0001775,5.30e-08,3;UBERON:0000020,1.09e-07,24;UBERON:0001032,1.09e-07,24;UBERON:0004456,1.09e-07,24;UBERON:0007023,1.14e-07,114;UBERON:0004151,2.75e-07,3 | |||
|phase1_expression=0,0,0.563817616383885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492484232307152,0.204000691244253,0.626909442956176,5.43848375549008,2.46373965131192,1.12988375635323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69490601792545,7.28816602508123,0,0.50133791063589,1.44846518960824,0,0.486634870302636,6.99557647014102,5.09977614163897,4.83091321312193,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0.275118041940067,0,2.32575083252396,7.1153252537342,0,0,0,0.24406205754817,0,0,0.892997282840798,0.44905874525234,0.675668882899933,0,0,0.183201743930407,0,0,0,0,0,0.397227542439656,0.860509862246441,0,0.560677600142307,0,0,3.11211035399766,0.134710672069688,0.326923806226917,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567160915800105,0,0.213557388818567,0,0.300091096084402,0.103052529238439,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,1.2347220339942,0,22.8159062679296,14.7424082501644,12.9973779469909,0,0.122988438543114,6.00487336044839,0,0,0,0,0,0,10.1031939417691,2.89826012437692,5.4007999348478,0.866198686566443,0.462985512576611,2.85381228351897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0.845302752556,0,0,0.257207374262142,0,0,1.14382394926518,0,0,0,3.19852753868291,0,8.44030255766841,8.71533458600294,7.59794732983634,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0.508189248444927,1.30139853857622,0.773288812777695,1.00509759200609,0,0,0,0,0.36807447515742,0,0,0.831883446123229,0,0,0,0,2.27407504055985,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0,0,0,0.256278298511402,0,0,0,0.154209693802656,0.887808626565635,0.0821271560138091,0,0.232420756919918,0,0,0,1.14814448164607,0,0.262248829918848,0,0.0770153371044148,0,0,0.105551628892876,0,0,0.647747748306418,1.54227252690289,0.270946437543853,0.501689773854853,0,0,0,0,0,1.53870075069834,0,0,6.28550171051106,0.27470839445503,0.577566499444116,0,0,6.42735719376638,0.096670718292122,0.308097234229289,0.614014698904518,0,1.50388342815583,0.290033387828457,0.340906509664404,1.15741646340759,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,3.62197368455267,0.255897791311334,0,0,0,1.07923474549989,0,1.29593642580255,0,0,0,0,0,0,0.272999822815972,1.55545975149084,1.13008116620243,0,0,0,0,0,0,0,0,0.430234056612155,0,0,0.709522128141196,0.422215270595328,1.31717957183961,0,0,0.0962221127255121,0,0,7.06078505825844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,1.46508179271894,0,0,0,0,0,0,0,0.140669416410513,0,3.29607748453519,0.211125408127993,0.796991953004279,1.38141957765574,0,0,0.123084805461069,0,0,0,0,0.789147245095469,0,0,0,0.185536196323703,0,0,0,1.44999915086959,0,1.77977555204936,0,0,0,0,0,0.361789315876224,0,0.331737779793674,0,0,0.10893846351899,0,1.84680620409113,0.569710279235006,0,0,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,1.32686346755009,0,0,0.247127877893006,0.522109747527277,0.202203398942031,0,0,0,0,0,0.394584402849391,2.41981432097328,0,0.884612114798832,0,0,0,0,0,0,0.284609546029793,0,0.173559738335131,0,0,2.27144668714639,0,0,0,0,2.03676934625681,0,0.90392296312213,0,0,0.0633107959558787,0,0.160317640503067,0.640358984218058,0.799238438328521,0,0,0,0,4.9701014226173,0,0,0,0.917983958726896,0.288950589901519,0,0.410716136675979,0,2.57859264851974,0,1.95497680890578,0.458320848023367,2.87149209830726,0,0.429226048136571,1.33902874465124,0.403100834920358,0,0,0.472699093843342,0.906574442192831,0.741438982396034,0.984274815147488,0,0,0.408610218334727,0,0,0,0,0,0.0607495566580247,0,5.75281663284147,0.786818822024972,0,0,0,5.71756261098694,1.32418394073086,0,0.542999601753713,0.864221491201268,0,3.59190574687462,0,0.340776043570843,1.13312091520126,18.4655814434384,0,0,0.39669780522807,0,0,2.56289790162467,0,2.07119527673598,2.97699613087171,0,0,0,0,0,0.306345576763462,0,0,0,0,0.1251909307065,1.72022758707021,0.665574309221114,0.372578417648301,0,0,2.12308764558307,0,0,0,0,0.149254802886874,0,0,0.568209015825267,2.0125432140206,2.66943366478961,0,1.81477108515887,0,0,0.477890301491107,0,0.465788870628778,0,0,1.04349012362347,4.80824348791099,2.28483127301277,0,0,0.322231671127465,0,0.796191777397232,0,0.686791410365586,0.336749488765919,0,0.192619830407303,3.43106546199881,0,1.36023555307363,0,0,0.179088841081487,0,8.33279388399087,0,0.964570191354574,0,0,0,0,0.276516872303462,0,0,0,0,0.491545817507439,0,0.79994958341972,0,2.06657975592979,0,0.184105950251841,0,0,0,0,0,0.109209638192014,0,0,0,0,0.318004350653419,0,0,0,0,0.256916900385838,0,0.159633859057151,0,0,0,0,0,0,0,0,0.231051332300676,0,0,0,3.68530608911361,0,0,0,0.49131575253029,0,0.0675375846183947,0,0.620060389503552,0.19024743058172,0,0,0,0,1.66091155931474,0.535701835878287,1.3451348888753,0,0.4553243827025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| ||
|short_description=p4@CFI | |||
}} | }} |
Latest revision as of 16:19, 24 September 2015
Short description: | p4@CFI |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CFI_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -17bp_to_ENST00000394635_5end |
EntrezGene: | CFI |
HGNC: | 5394 |
UniProt: | E7ETH0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 5.20e-10 | 4 |
vertebrate lens cell | 5.20e-10 | 4 |
lens epithelial cell | 5.20e-10 | 4 |
ciliated cell | 5.30e-08 | 3 |
ciliated epithelial cell | 5.30e-08 | 3 |
multi-ciliated epithelial cell | 5.30e-08 | 3 |
non-pigmented ciliary epithelial cell | 5.30e-08 | 3 |
astrocyte of the cerebral cortex | 4.31e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 4.76e-16 | 11 |
atypical epithelium | 3.79e-10 | 4 |
cuboidal epithelium | 5.20e-10 | 4 |
transparent eye structure | 5.20e-10 | 4 |
simple cuboidal epithelium | 5.20e-10 | 4 |
cranial placode | 5.20e-10 | 4 |
lens of camera-type eye | 5.20e-10 | 4 |
epithelium of lens | 5.20e-10 | 4 |
lens placode | 5.20e-10 | 4 |
lens vesicle | 5.20e-10 | 4 |
anterior segment of eyeball | 8.42e-10 | 14 |
camera-type eye | 1.11e-09 | 20 |
simple eye | 1.11e-09 | 20 |
immature eye | 1.11e-09 | 20 |
ocular region | 1.11e-09 | 20 |
eyeball of camera-type eye | 1.11e-09 | 20 |
optic cup | 1.11e-09 | 20 |
optic vesicle | 1.11e-09 | 20 |
eye primordium | 1.11e-09 | 20 |
eye | 4.11e-09 | 21 |
visual system | 4.11e-09 | 21 |
face | 1.36e-08 | 22 |
primordium | 3.12e-08 | 160 |
ciliary epithelium | 5.30e-08 | 3 |
ciliary body | 5.30e-08 | 3 |
sense organ | 1.09e-07 | 24 |
sensory system | 1.09e-07 | 24 |
entire sense organ system | 1.09e-07 | 24 |
adult organism | 1.14e-07 | 114 |
cardiac chamber | 2.75e-07 | 3 |