FFCP PHASE1:Hg19::chr20:19869819..19869845,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54453 | |EntrezGene=54453 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18750 | |HGNC=18750 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-173bp_to_ENST00000459721_5end | |association_with_transcript=-173bp_to_ENST00000459721_5end | ||
|cluster_id=chr20:19869819..19869845,+ | |||
|description=CAGE_peak_13_at_RIN2_5end | |description=CAGE_peak_13_at_RIN2_5end | ||
|id=chr20:19869819..19869845,+ | |id=chr20:19869819..19869845,+ | ||
|ontology_enrichment_celltype=CL:0000222!9.42e-17!119;CL:0000359!3.30e-10!32;CL:0000183!8.11e-10!59;CL:0000192!9.75e-10!42;CL:0000514!9.75e-10!42;CL:0000187!1.10e-09!54;CL:0000680!4.43e-09!57;CL:0000056!4.43e-09!57;CL:0000355!4.43e-09!57;CL:0000220!1.15e-08!246;CL:0002321!2.41e-08!248;CL:0000213!4.26e-08!57;CL:0000215!4.26e-08!57;CL:0002139!6.57e-08!24;CL:0002539!1.54e-07!10;CL:0000393!1.98e-07!60;CL:0000211!1.98e-07!60 | |ontology_enrichment_celltype=CL:0000222!9.42e-17!119;CL:0000359!3.30e-10!32;CL:0000183!8.11e-10!59;CL:0000192!9.75e-10!42;CL:0000514!9.75e-10!42;CL:0000187!1.10e-09!54;CL:0000680!4.43e-09!57;CL:0000056!4.43e-09!57;CL:0000355!4.43e-09!57;CL:0000220!1.15e-08!246;CL:0002321!2.41e-08!248;CL:0000213!4.26e-08!57;CL:0000215!4.26e-08!57;CL:0002139!6.57e-08!24;CL:0002539!1.54e-07!10;CL:0000393!1.98e-07!60;CL:0000211!1.98e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.23e-12;32!CL:0002539;8.28e-09;10!CL:0002139;1.13e-08;24!CL:0000192;2.04e-08;43!CL:0000213;4.68e-07;58!CL:0000215;4.68e-07;58!CL:0000115;6.95e-07;36!CL:0000071;8.30e-07;18!CL:0000708;8.40e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.46e-14,121;CL:0000359,8.12e-13,32;CL:0000192,6.66e-11,43;CL:0000514,6.66e-11,43;CL:0000213,3.14e-09,58;CL:0000215,3.14e-09,58;CL:0002539,6.86e-09,10;CL:0002139,1.07e-08,24;CL:0000187,1.60e-07,55;CL:0000708,5.40e-07,3;CL:0000115,5.41e-07,36;CL:0000680,6.58e-07,58;CL:0000056,6.58e-07,58;CL:0000355,6.58e-07,58;CL:0002582,8.59e-07,3;CL:0000071,9.82e-07,18;CL:0002546,9.82e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000514;2.04e-08;43!CL:0002546;8.30e-07;18 | |||
|ontology_enrichment_disease=DOID:2394!4.97e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.28e-11;14!DOID:120;1.76e-07;27!DOID:193;8.66e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.68e-11,14;DOID:120,1.31e-07,27;DOID:193,6.62e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0004872!2.50e-19!84;UBERON:0000055!7.74e-19!69;UBERON:0001981!2.78e-18!60;UBERON:0007500!2.78e-18!60;UBERON:0004537!2.78e-18!60;UBERON:0006965!2.78e-18!60;UBERON:0004111!3.91e-18!241;UBERON:0002049!5.53e-18!79;UBERON:0007798!5.53e-18!79;UBERON:0000119!2.01e-16!312;UBERON:0001637!3.80e-16!42;UBERON:0003509!3.80e-16!42;UBERON:0004572!3.80e-16!42;UBERON:0000477!2.24e-15!286;UBERON:0000483!3.64e-15!309;UBERON:0000025!9.23e-15!194;UBERON:0003914!1.29e-14!118;UBERON:0001009!2.30e-14!113;UBERON:0004535!7.29e-14!110;UBERON:0004573!1.46e-13!33;UBERON:0004571!1.46e-13!33;UBERON:0000481!5.75e-12!347;UBERON:0000490!2.99e-10!138;UBERON:0000947!1.39e-09!21;UBERON:0010191!1.39e-09!21;UBERON:0000467!6.11e-09!625;UBERON:0000480!8.23e-09!626;UBERON:0002385!1.17e-08!63;UBERON:0001015!1.17e-08!63;UBERON:0000383!1.17e-08!63;UBERON:0000475!1.52e-08!365;UBERON:0000486!3.63e-08!82;UBERON:0005256!4.23e-08!143;UBERON:0001134!5.14e-08!61;UBERON:0002036!5.14e-08!61;UBERON:0003082!5.14e-08!61;UBERON:0004290!5.76e-08!70;UBERON:0002100!1.50e-07!216;UBERON:0004237!1.54e-07!10;UBERON:0004695!1.54e-07!10;UBERON:0002111!1.54e-07!10;UBERON:0004178!1.54e-07!10;UBERON:0000914!1.78e-07!83;UBERON:0002329!1.78e-07!83;UBERON:0003077!1.78e-07!83;UBERON:0003059!1.78e-07!83;UBERON:0007282!1.78e-07!83;UBERON:0009618!1.78e-07!83;UBERON:0007285!1.78e-07!83;UBERON:0001135!2.58e-07!15;UBERON:0000468!3.29e-07!659;UBERON:0000992!6.03e-07!13;UBERON:0003104!6.05e-07!238;UBERON:0009142!6.05e-07!238;UBERON:0000923!7.10e-07!604;UBERON:0005291!7.10e-07!604;UBERON:0006598!7.10e-07!604;UBERON:0002532!7.10e-07!604;UBERON:0002050!9.19e-07!605;UBERON:0005423!9.19e-07!605 | |ontology_enrichment_uberon=UBERON:0004872!2.50e-19!84;UBERON:0000055!7.74e-19!69;UBERON:0001981!2.78e-18!60;UBERON:0007500!2.78e-18!60;UBERON:0004537!2.78e-18!60;UBERON:0006965!2.78e-18!60;UBERON:0004111!3.91e-18!241;UBERON:0002049!5.53e-18!79;UBERON:0007798!5.53e-18!79;UBERON:0000119!2.01e-16!312;UBERON:0001637!3.80e-16!42;UBERON:0003509!3.80e-16!42;UBERON:0004572!3.80e-16!42;UBERON:0000477!2.24e-15!286;UBERON:0000483!3.64e-15!309;UBERON:0000025!9.23e-15!194;UBERON:0003914!1.29e-14!118;UBERON:0001009!2.30e-14!113;UBERON:0004535!7.29e-14!110;UBERON:0004573!1.46e-13!33;UBERON:0004571!1.46e-13!33;UBERON:0000481!5.75e-12!347;UBERON:0000490!2.99e-10!138;UBERON:0000947!1.39e-09!21;UBERON:0010191!1.39e-09!21;UBERON:0000467!6.11e-09!625;UBERON:0000480!8.23e-09!626;UBERON:0002385!1.17e-08!63;UBERON:0001015!1.17e-08!63;UBERON:0000383!1.17e-08!63;UBERON:0000475!1.52e-08!365;UBERON:0000486!3.63e-08!82;UBERON:0005256!4.23e-08!143;UBERON:0001134!5.14e-08!61;UBERON:0002036!5.14e-08!61;UBERON:0003082!5.14e-08!61;UBERON:0004290!5.76e-08!70;UBERON:0002100!1.50e-07!216;UBERON:0004237!1.54e-07!10;UBERON:0004695!1.54e-07!10;UBERON:0002111!1.54e-07!10;UBERON:0004178!1.54e-07!10;UBERON:0000914!1.78e-07!83;UBERON:0002329!1.78e-07!83;UBERON:0003077!1.78e-07!83;UBERON:0003059!1.78e-07!83;UBERON:0007282!1.78e-07!83;UBERON:0009618!1.78e-07!83;UBERON:0007285!1.78e-07!83;UBERON:0001135!2.58e-07!15;UBERON:0000468!3.29e-07!659;UBERON:0000992!6.03e-07!13;UBERON:0003104!6.05e-07!238;UBERON:0009142!6.05e-07!238;UBERON:0000923!7.10e-07!604;UBERON:0005291!7.10e-07!604;UBERON:0006598!7.10e-07!604;UBERON:0002532!7.10e-07!604;UBERON:0002050!9.19e-07!605;UBERON:0005423!9.19e-07!605 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.90e-18;33!UBERON:0004571;1.90e-18;33!UBERON:0001637;8.72e-15;42!UBERON:0003509;8.72e-15;42!UBERON:0004572;8.72e-15;42!UBERON:0002118;3.15e-11;5!UBERON:0007500;6.25e-11;56!UBERON:0001981;6.25e-11;56!UBERON:0004537;6.25e-11;56!UBERON:0000947;1.78e-10;21!UBERON:0010191;1.78e-10;21!UBERON:0000992;1.57e-09;13!UBERON:0004237;8.28e-09;10!UBERON:0004695;8.28e-09;10!UBERON:0002111;8.28e-09;10!UBERON:0004178;8.28e-09;10!UBERON:0000055;2.21e-08;65!UBERON:0000487;3.60e-08;22!UBERON:0002049;1.81e-07;75!UBERON:0007798;1.81e-07;75!UBERON:0001135;2.58e-07;15!UBERON:0003914;5.84e-07;74!UBERON:0006914;6.52e-07;25!UBERON:0004638;8.30e-07;18!UBERON:0001986;8.30e-07;18!UBERON:0004852;8.30e-07;18!UBERON:0003210;8.40e-07;3!UBERON:0000991;8.82e-07;21 | |||
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| ||
|short_description=p13@RIN2 | |short_description=p13@RIN2 | ||
}} | }} |
Latest revision as of 16:07, 24 September 2015
Short description: | p13@RIN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_RIN2_5end |
Coexpression cluster: | NA |
Association with transcript: | -173bp_to_ENST00000459721_5end |
EntrezGene: | RIN2 |
HGNC: | 18750 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.46e-14 | 121 |
vascular associated smooth muscle cell | 8.12e-13 | 32 |
smooth muscle cell | 6.66e-11 | 43 |
smooth muscle myoblast | 6.66e-11 | 43 |
lining cell | 3.14e-09 | 58 |
barrier cell | 3.14e-09 | 58 |
aortic smooth muscle cell | 6.86e-09 | 10 |
endothelial cell of vascular tree | 1.07e-08 | 24 |
muscle cell | 1.60e-07 | 55 |
leptomeningeal cell | 5.40e-07 | 3 |
endothelial cell | 5.41e-07 | 36 |
muscle precursor cell | 6.58e-07 | 58 |
myoblast | 6.58e-07 | 58 |
multi-potent skeletal muscle stem cell | 6.58e-07 | 58 |
visceral preadipocyte | 8.59e-07 | 3 |
blood vessel endothelial cell | 9.82e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.82e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.68e-11 | 14 |
female reproductive organ cancer | 1.31e-07 | 27 |
reproductive organ cancer | 6.62e-07 | 29 |