FFCP PHASE1:Hg19::chr4:109541684..109541697,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6164 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10340 | |||
|TSSclassifier=strong | |||
|UniProt=P49207 | |||
|association_with_transcript=-24bp_to_ENST00000394667,NM_000995,uc003hyz.2_5end | |||
|cluster_id=chr4:109541684..109541697,+ | |||
|coexpression_cluster_id=C1236 | |||
|description=CAGE_peak_4_at_RPL34_5end | |||
|id=chr4:109541684..109541697,+ | |||
|ontology_enrichment_celltype=CL:0000012!4.82e-33!682;CL:0000548!6.13e-33!679;CL:0000004!6.13e-33!679;CL:0000255!6.13e-33!679;CL:0000144!2.92e-23!625;CL:0002321!2.86e-21!248;CL:0000220!8.01e-21!246;CL:0000003!1.85e-20!722;CL:0002371!4.44e-18!591;CL:0000066!1.70e-14!254;CL:0000055!2.40e-12!180;CL:0000680!1.15e-11!57;CL:0000056!1.15e-11!57;CL:0000355!1.15e-11!57;CL:0000393!1.35e-11!60;CL:0000211!1.35e-11!60;CL:0000183!6.49e-11!59;CL:0000222!6.61e-11!119;CL:0000187!7.98e-11!54;CL:0000063!9.56e-11!578;CL:0000192!3.09e-08!42;CL:0000514!3.09e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0000187;1.92e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.54e-21,250;CL:0000066,7.68e-14,253;CL:0000222,9.24e-12,121;CL:0000680,1.23e-11,58;CL:0000056,1.23e-11,58;CL:0000355,1.23e-11,58;CL:0000393,3.03e-11,61;CL:0000211,3.03e-11,61;CL:0000187,9.24e-11,55;CL:0000192,4.63e-08,43;CL:0000514,4.63e-08,43 | |||
|ontology_enrichment_development_v019=CL:0000355;2.94e-07;58 | |||
|ontology_enrichment_disease=DOID:14566!3.18e-14!239;DOID:162!1.58e-13!235;DOID:2531!1.40e-09!51;DOID:0060083!1.40e-09!51;DOID:0050686!2.44e-08!137;DOID:1240!1.03e-07!39;DOID:8692!6.56e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;3.41e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,7.67e-12,239;DOID:162,3.53e-11,235;DOID:2531,1.17e-09,51;DOID:0060083,1.17e-09,51;DOID:1240,6.49e-08,39;DOID:8692,2.17e-07,31;DOID:0050686,2.31e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0000914!9.61e-13!83;UBERON:0002329!9.61e-13!83;UBERON:0003077!9.61e-13!83;UBERON:0003059!9.61e-13!83;UBERON:0007282!9.61e-13!83;UBERON:0009618!9.61e-13!83;UBERON:0007285!9.61e-13!83;UBERON:0000486!1.89e-12!82;UBERON:0005256!6.13e-12!143;UBERON:0004290!8.42e-12!70;UBERON:0003104!6.88e-11!238;UBERON:0009142!6.88e-11!238;UBERON:0002100!1.14e-10!216;UBERON:0001134!1.49e-09!61;UBERON:0002036!1.49e-09!61;UBERON:0003082!1.49e-09!61;UBERON:0000490!1.51e-09!138;UBERON:0002385!1.27e-08!63;UBERON:0001015!1.27e-08!63;UBERON:0000383!1.27e-08!63 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,7.98e-14,78;UBERON:0000486,7.79e-13,83;UBERON:0002329,4.18e-12,71;UBERON:0003059,4.18e-12,71;UBERON:0007282,4.18e-12,71;UBERON:0004290,4.18e-12,71;UBERON:0009618,4.18e-12,71;UBERON:0007524,4.79e-12,73;UBERON:0003077,7.71e-12,72;UBERON:0007285,7.71e-12,72;UBERON:0000490,1.07e-11,148;UBERON:0003104,3.33e-11,160;UBERON:0009142,3.33e-11,160;UBERON:0005256,1.53e-10,122;UBERON:0002100,3.75e-10,199;UBERON:0001134,9.36e-10,62;UBERON:0002036,9.36e-10,62;UBERON:0003082,9.36e-10,62;UBERON:0002385,8.77e-09,64;UBERON:0001015,8.77e-09,64;UBERON:0000383,8.77e-09,64;UBERON:0001637,5.98e-07,42;UBERON:0003509,5.98e-07,42;UBERON:0004572,5.98e-07,42 | |||
|phase1_expression=2.90685406832891,1.49870366723688,1.69145284915165,4.00293193412522,2.68176656656373,0,0,3.15859936713415,0.261185628199839,16.4641737456011,14.653824527421,1.96597234917155,1.58260186937072,1.11389717664042,1.65698687863958,3.36162573225888,6.02694528023977,3.65155045193687,3.41552959153355,3.93987385845721,2.24400760368678,0.940364164434263,0.572471974262113,4.79060487755095,1.75759695432724,4.50839093912912,5.91124244039609,7.00525953691745,1.57345710739562,1.53531759238885,1.85779347979291,25.74379428541,3.91567694411725,2.58827807116751,2.94375362205146,7.81930778680818,1.76160263600908,0.553995408531877,1.00272223735071,0,0,0,0,0.145398238779565,0.377875943688809,0.485168122375632,0,0,0.309706370895104,0,0.256160706529101,0.945928919554341,0,0,0,0.376484679085209,0,0.449446968890169,0.612167784741805,0.641858054152187,0.639337125799041,0,0.199463657621632,0,0.870627715885752,0.56738522469114,1.24564449799115,0.502497330513487,0.521482918420201,0.217188844705117,1.21079900526674,0.368277635987565,0.632924774881769,1.47878700418359,0.850417199860174,0.419317291016752,0.786300418025466,0.300353785683013,0.48217676009124,0.855038231223746,0.39783335439818,0.547992461293902,0,0,0,1.28019066769952,0.400395987036012,0.574752439954483,0,0,0.569212969109448,0.587237189370939,0.764546456250458,0,1.68152568894461,4.21414535640123,0.983548850569165,0.786021525498329,0.616804496998528,0.668745981562712,0,1.4203434172042,3.89653456815823,0.334231370655521,0.589211814949674,0.664601683750863,0.270803863765016,0.25618263945135,0.260118695119756,1.31550323682941,1.65810010671509,0.869409257205157,0.741432815810302,0,0,0.453237370790265,0.383220493601921,0,0.506039384039006,0.637130828648193,0,0,0,0.383959833463255,0,0.236777252044017,0,0.201606743224732,0.534880391567015,0.724122019413995,4.87613732627923,1.34140171940727,1.40648818027883,1.0843174571537,0,1.30361867064741,2.3858578411533,0,2.83604451492204,4.43458794925128,2.3715392137144,0.785874452986276,6.9216104775583,15.2021621541616,0.649094787309367,1.21890816109487,0.664789802594326,0.953962497221368,1.14398982156026,2.60020250930695,3.57772333260069,5.16140757063675,1.73570250803797,4.52246353539208,2.51699661725944,1.10047216776027,3.34391946458897,2.32575083252396,1.06729878806013,0.66944122552934,1.61131726843659,5.32190474002959,1.70843440283719,7.72092468726324,9.72170337458112,3.30408994651095,1.34717623575702,3.26573293401634,0,0,3.48083313467774,0,0,6.97750483428055,0.993943903390637,5.57174251324151,3.44263870114369,1.43418310374407,2.83734705758686,2.24271040056923,3.20246987189115,1.97334038733728,1.24484414159907,1.21239604862719,4.7403951902903,1.51357427644931,0.576175924479999,2.10889288650417,8.74048215124897,9.69802096625564,6.57574194427925,7.75067691048848,8.90301194024723,12.0787693763934,4.89970011011744,5.15904132709426,1.13658359293342,3.56400857184616,0.247266929278557,2.73048408581408,4.31170885089743,6.06010010234638,4.37914819551875,4.15596173226274,1.75591048352335,3.0648779579902,0.45071417671979,8.96114246964166,1.79389635688862,0.213557388818567,2.33125091275518,2.40072876867522,2.16410311400722,1.28820270022815,0.930584281657949,1.18143432568886,1.46155507741798,2.01947019395292,1.28869858099219,1.13152239773168,0.710019185033229,1.30977727695932,2.20428770003634,5.60456474173561,5.45492241181669,5.44928731239107,4.63500083292463,3.31324420803713,3.48581828608555,2.59152637538426,6.05570042101508,7.66452454059243,1.56449532329816,1.28648187638577,2.76269842704961,1.85747171212792,6.49691533502627,3.66751080123516,2.36018566109342,5.3022426574366,5.4044046638873,2.39667388501647,4.50814176311084,5.66291494272691,6.27908688401107,5.77120735419586,1.4763109092493,2.80483547606892,1.2347220339942,2.94017422771084,2.53510069643662,0,2.36315962672562,4.85609409356116,2.09080345523293,8.7499583252248,6.25576626829166,2.24803506515239,8.44443368257699,6.94413338688972,1.62904152655162,8.31947828223663,5.77325368101093,0.811512834825538,2.23076519048061,3.03169540298255,1.38895653772983,2.09279567458058,0.790204397959275,0,0.246217006087397,0.234004265139238,0.891786973732369,23.4334584966942,2.51973192298289,14.1775097242386,4.92571874865666,5.52204483176528,1.91691339582606,0,0.264145302039678,0.207328115540772,0.288239906833923,0.12624243342638,3.11139682031628,0.763976851116555,0,1.71072446022705,3.59896224461632,0.901029173531752,0.285826432630578,2.69114602428866,2.1798003441664,7.333828582095,3.74887975697556,0,10.143633030672,1.59562869950922,2.08014873822732,12.0887465903207,7.09245660116391,7.72624319146688,2.00169191121407,1.08524321078289,15.6415663988346,15.6353368460993,1.77695974371273,15.0470855857352,3.61727252471503,3.48613383440118,0.799783929456456,1.2162378064119,0.502257091432126,0,3.83399768786532,0,5.70547620162874,14.1885680534228,2.26023954805422,6.08807275015645,0.448340575974109,0.591092280605782,1.07813787429759,0.385029108839245,0.76228387266739,0,0.773288812777695,0.670065061337395,2.55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| |||
|short_description=p4@RPL34 | |||
}} |
Latest revision as of 15:30, 24 September 2015
Short description: | p4@RPL34 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RPL34_5end |
Coexpression cluster: | C1236_acute_Mesenchymal_iPS_Skeletal_Bronchial_chronic_embryonic |
Association with transcript: | -24bp_to_ENST00000394667, NM_000995, uc003hyz.2_5end |
EntrezGene: | RPL34 |
HGNC: | 10340 |
UniProt: | P49207 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.54e-21 | 250 |
epithelial cell | 7.68e-14 | 253 |
mesodermal cell | 9.24e-12 | 121 |
muscle precursor cell | 1.23e-11 | 58 |
myoblast | 1.23e-11 | 58 |
multi-potent skeletal muscle stem cell | 1.23e-11 | 58 |
electrically responsive cell | 3.03e-11 | 61 |
electrically active cell | 3.03e-11 | 61 |
muscle cell | 9.24e-11 | 55 |
smooth muscle cell | 4.63e-08 | 43 |
smooth muscle myoblast | 4.63e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 7.98e-14 | 78 |
multilaminar epithelium | 7.79e-13 | 83 |
somite | 4.18e-12 | 71 |
presomitic mesoderm | 4.18e-12 | 71 |
presumptive segmental plate | 4.18e-12 | 71 |
dermomyotome | 4.18e-12 | 71 |
trunk paraxial mesoderm | 4.18e-12 | 71 |
dense mesenchyme tissue | 4.79e-12 | 73 |
paraxial mesoderm | 7.71e-12 | 72 |
presumptive paraxial mesoderm | 7.71e-12 | 72 |
unilaminar epithelium | 1.07e-11 | 148 |
mesenchyme | 3.33e-11 | 160 |
entire embryonic mesenchyme | 3.33e-11 | 160 |
trunk mesenchyme | 1.53e-10 | 122 |
trunk | 3.75e-10 | 199 |
skeletal muscle tissue | 9.36e-10 | 62 |
striated muscle tissue | 9.36e-10 | 62 |
myotome | 9.36e-10 | 62 |
muscle tissue | 8.77e-09 | 64 |
musculature | 8.77e-09 | 64 |
musculature of body | 8.77e-09 | 64 |
artery | 5.98e-07 | 42 |
arterial blood vessel | 5.98e-07 | 42 |
arterial system | 5.98e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 7.67e-12 | 239 |
cancer | 3.53e-11 | 235 |
hematologic cancer | 1.17e-09 | 51 |
immune system cancer | 1.17e-09 | 51 |
leukemia | 6.49e-08 | 39 |
myeloid leukemia | 2.17e-07 | 31 |
organ system cancer | 2.31e-07 | 137 |