FFCP PHASE1:Hg19::chr4:109541684..109541697,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6164 | |EntrezGene=6164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10340 | |HGNC=10340 | ||
|TSSclassifier=strong | |||
|UniProt=P49207 | |UniProt=P49207 | ||
|association_with_transcript=-24bp_to_ENST00000394667,NM_000995,uc003hyz.2_5end | |association_with_transcript=-24bp_to_ENST00000394667,NM_000995,uc003hyz.2_5end | ||
|cluster_id=chr4:109541684..109541697,+ | |||
|coexpression_cluster_id=C1236 | |coexpression_cluster_id=C1236 | ||
|description=CAGE_peak_4_at_RPL34_5end | |description=CAGE_peak_4_at_RPL34_5end | ||
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|ontology_enrichment_celltype=CL:0000012!4.82e-33!682;CL:0000548!6.13e-33!679;CL:0000004!6.13e-33!679;CL:0000255!6.13e-33!679;CL:0000144!2.92e-23!625;CL:0002321!2.86e-21!248;CL:0000220!8.01e-21!246;CL:0000003!1.85e-20!722;CL:0002371!4.44e-18!591;CL:0000066!1.70e-14!254;CL:0000055!2.40e-12!180;CL:0000680!1.15e-11!57;CL:0000056!1.15e-11!57;CL:0000355!1.15e-11!57;CL:0000393!1.35e-11!60;CL:0000211!1.35e-11!60;CL:0000183!6.49e-11!59;CL:0000222!6.61e-11!119;CL:0000187!7.98e-11!54;CL:0000063!9.56e-11!578;CL:0000192!3.09e-08!42;CL:0000514!3.09e-08!42 | |ontology_enrichment_celltype=CL:0000012!4.82e-33!682;CL:0000548!6.13e-33!679;CL:0000004!6.13e-33!679;CL:0000255!6.13e-33!679;CL:0000144!2.92e-23!625;CL:0002321!2.86e-21!248;CL:0000220!8.01e-21!246;CL:0000003!1.85e-20!722;CL:0002371!4.44e-18!591;CL:0000066!1.70e-14!254;CL:0000055!2.40e-12!180;CL:0000680!1.15e-11!57;CL:0000056!1.15e-11!57;CL:0000355!1.15e-11!57;CL:0000393!1.35e-11!60;CL:0000211!1.35e-11!60;CL:0000183!6.49e-11!59;CL:0000222!6.61e-11!119;CL:0000187!7.98e-11!54;CL:0000063!9.56e-11!578;CL:0000192!3.09e-08!42;CL:0000514!3.09e-08!42 | ||
|ontology_enrichment_celltype_v019=CL:0000187;1.92e-07;55 | |ontology_enrichment_celltype_v019=CL:0000187;1.92e-07;55 | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.54e-21,250;CL:0000066,7.68e-14,253;CL:0000222,9.24e-12,121;CL:0000680,1.23e-11,58;CL:0000056,1.23e-11,58;CL:0000355,1.23e-11,58;CL:0000393,3.03e-11,61;CL:0000211,3.03e-11,61;CL:0000187,9.24e-11,55;CL:0000192,4.63e-08,43;CL:0000514,4.63e-08,43 | |||
|ontology_enrichment_development_v019=CL:0000355;2.94e-07;58 | |ontology_enrichment_development_v019=CL:0000355;2.94e-07;58 | ||
|ontology_enrichment_disease=DOID:14566!3.18e-14!239;DOID:162!1.58e-13!235;DOID:2531!1.40e-09!51;DOID:0060083!1.40e-09!51;DOID:0050686!2.44e-08!137;DOID:1240!1.03e-07!39;DOID:8692!6.56e-07!31 | |ontology_enrichment_disease=DOID:14566!3.18e-14!239;DOID:162!1.58e-13!235;DOID:2531!1.40e-09!51;DOID:0060083!1.40e-09!51;DOID:0050686!2.44e-08!137;DOID:1240!1.03e-07!39;DOID:8692!6.56e-07!31 | ||
|ontology_enrichment_disease_v019=DOID:8692;3.41e-07;31 | |ontology_enrichment_disease_v019=DOID:8692;3.41e-07;31 | ||
|ontology_enrichment_disease_v019_2=DOID:14566,7.67e-12,239;DOID:162,3.53e-11,235;DOID:2531,1.17e-09,51;DOID:0060083,1.17e-09,51;DOID:1240,6.49e-08,39;DOID:8692,2.17e-07,31;DOID:0050686,2.31e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0000914!9.61e-13!83;UBERON:0002329!9.61e-13!83;UBERON:0003077!9.61e-13!83;UBERON:0003059!9.61e-13!83;UBERON:0007282!9.61e-13!83;UBERON:0009618!9.61e-13!83;UBERON:0007285!9.61e-13!83;UBERON:0000486!1.89e-12!82;UBERON:0005256!6.13e-12!143;UBERON:0004290!8.42e-12!70;UBERON:0003104!6.88e-11!238;UBERON:0009142!6.88e-11!238;UBERON:0002100!1.14e-10!216;UBERON:0001134!1.49e-09!61;UBERON:0002036!1.49e-09!61;UBERON:0003082!1.49e-09!61;UBERON:0000490!1.51e-09!138;UBERON:0002385!1.27e-08!63;UBERON:0001015!1.27e-08!63;UBERON:0000383!1.27e-08!63 | |ontology_enrichment_uberon=UBERON:0000914!9.61e-13!83;UBERON:0002329!9.61e-13!83;UBERON:0003077!9.61e-13!83;UBERON:0003059!9.61e-13!83;UBERON:0007282!9.61e-13!83;UBERON:0009618!9.61e-13!83;UBERON:0007285!9.61e-13!83;UBERON:0000486!1.89e-12!82;UBERON:0005256!6.13e-12!143;UBERON:0004290!8.42e-12!70;UBERON:0003104!6.88e-11!238;UBERON:0009142!6.88e-11!238;UBERON:0002100!1.14e-10!216;UBERON:0001134!1.49e-09!61;UBERON:0002036!1.49e-09!61;UBERON:0003082!1.49e-09!61;UBERON:0000490!1.51e-09!138;UBERON:0002385!1.27e-08!63;UBERON:0001015!1.27e-08!63;UBERON:0000383!1.27e-08!63 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
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| ||
|short_description=p4@RPL34 | |short_description=p4@RPL34 | ||
}} | }} |
Latest revision as of 15:30, 24 September 2015
Short description: | p4@RPL34 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RPL34_5end |
Coexpression cluster: | C1236_acute_Mesenchymal_iPS_Skeletal_Bronchial_chronic_embryonic |
Association with transcript: | -24bp_to_ENST00000394667, NM_000995, uc003hyz.2_5end |
EntrezGene: | RPL34 |
HGNC: | 10340 |
UniProt: | P49207 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.54e-21 | 250 |
epithelial cell | 7.68e-14 | 253 |
mesodermal cell | 9.24e-12 | 121 |
muscle precursor cell | 1.23e-11 | 58 |
myoblast | 1.23e-11 | 58 |
multi-potent skeletal muscle stem cell | 1.23e-11 | 58 |
electrically responsive cell | 3.03e-11 | 61 |
electrically active cell | 3.03e-11 | 61 |
muscle cell | 9.24e-11 | 55 |
smooth muscle cell | 4.63e-08 | 43 |
smooth muscle myoblast | 4.63e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 7.98e-14 | 78 |
multilaminar epithelium | 7.79e-13 | 83 |
somite | 4.18e-12 | 71 |
presomitic mesoderm | 4.18e-12 | 71 |
presumptive segmental plate | 4.18e-12 | 71 |
dermomyotome | 4.18e-12 | 71 |
trunk paraxial mesoderm | 4.18e-12 | 71 |
dense mesenchyme tissue | 4.79e-12 | 73 |
paraxial mesoderm | 7.71e-12 | 72 |
presumptive paraxial mesoderm | 7.71e-12 | 72 |
unilaminar epithelium | 1.07e-11 | 148 |
mesenchyme | 3.33e-11 | 160 |
entire embryonic mesenchyme | 3.33e-11 | 160 |
trunk mesenchyme | 1.53e-10 | 122 |
trunk | 3.75e-10 | 199 |
skeletal muscle tissue | 9.36e-10 | 62 |
striated muscle tissue | 9.36e-10 | 62 |
myotome | 9.36e-10 | 62 |
muscle tissue | 8.77e-09 | 64 |
musculature | 8.77e-09 | 64 |
musculature of body | 8.77e-09 | 64 |
artery | 5.98e-07 | 42 |
arterial blood vessel | 5.98e-07 | 42 |
arterial system | 5.98e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 7.67e-12 | 239 |
cancer | 3.53e-11 | 235 |
hematologic cancer | 1.17e-09 | 51 |
immune system cancer | 1.17e-09 | 51 |
leukemia | 6.49e-08 | 39 |
myeloid leukemia | 2.17e-07 | 31 |
organ system cancer | 2.31e-07 | 137 |