FFCP PHASE1:Hg19::chr14:54423459..54423483,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=652 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1071 | |||
|TSSclassifier=strong | |||
|UniProt=P12644 | |||
|association_with_transcript=45bp_to_ENST00000245451,ENST00000559087_5end | |||
|cluster_id=chr14:54423459..54423483,- | |||
|coexpression_cluster_id=C3433 | |||
|description=CAGE_peak_4_at_BMP4_5end | |||
|id=chr14:54423459..54423483,- | |||
|ontology_enrichment_celltype=CL:0000213!8.09e-21!57;CL:0000215!8.09e-21!57;CL:0002078!2.39e-17!44;CL:0000066!2.90e-15!254;CL:0002139!6.52e-14!24;CL:0000115!1.81e-13!35;CL:0000222!2.19e-11!119;CL:0000076!5.66e-11!62;CL:0000071!9.90e-11!18;CL:0002546!9.90e-11!18;CL:0002321!2.74e-08!248;CL:1000413!3.56e-08!9;CL:0000220!8.52e-08!246;CL:0000077!2.69e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.97e-19;24!CL:0000115;9.97e-16;36!CL:0000213;4.06e-15;58!CL:0000215;4.06e-15;58!CL:0000071;4.21e-14;18!CL:0002078;6.61e-13;45!CL:1000413;3.60e-12;9!CL:0000077;5.49e-09;19!CL:0002544;1.25e-08;6!CL:0000076;5.52e-08;63!CL:0002543;1.80e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000213,2.01e-26,58;CL:0000215,2.01e-26,58;CL:0002078,3.04e-20,45;CL:0002139,3.09e-19,24;CL:0000115,9.85e-18,36;CL:0000066,1.00e-17,253;CL:0000071,3.44e-14,18;CL:0002546,3.44e-14,18;CL:0000222,1.80e-12,121;CL:1000413,4.13e-12,9;CL:0000076,4.76e-12,63;CL:0002321,8.75e-10,250;CL:0000077,5.22e-09,19;CL:0002544,1.28e-08,6;CL:0002543,1.25e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;4.21e-14;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!3.73e-20!312;UBERON:0000483!1.01e-19!309;UBERON:0004111!2.70e-19!241;UBERON:0000477!3.37e-19!286;UBERON:0000481!2.49e-15!347;UBERON:0000025!5.04e-14!194;UBERON:0006914!6.77e-14!25;UBERON:0003914!8.29e-14!118;UBERON:0000487!1.27e-12!22;UBERON:0003064!1.83e-11!37;UBERON:0001986!9.90e-11!18;UBERON:0004638!9.90e-11!18;UBERON:0004852!9.90e-11!18;UBERON:0009569!3.30e-10!113;UBERON:0002100!7.67e-10!216;UBERON:0000058!1.58e-09!26;UBERON:0000490!2.70e-09!138;UBERON:0003104!6.01e-09!238;UBERON:0009142!6.01e-09!238;UBERON:0001007!6.31e-09!155;UBERON:0001555!6.31e-09!155;UBERON:0007026!6.31e-09!155;UBERON:0000466!6.40e-09!126;UBERON:0005172!7.34e-09!55;UBERON:0005173!7.34e-09!55;UBERON:0001048!1.54e-08!168;UBERON:0001008!2.23e-08!45;UBERON:0000064!2.95e-08!219;UBERON:0003915!3.56e-08!9;UBERON:0004700!3.56e-08!9;UBERON:0001917!3.56e-08!9;UBERON:0005177!3.59e-08!107;UBERON:0000475!7.47e-08!365;UBERON:0006554!7.67e-08!44;UBERON:0004921!1.25e-07!129;UBERON:0004185!1.25e-07!129;UBERON:0000468!1.46e-07!659;UBERON:0002417!1.78e-07!61;UBERON:0000916!1.78e-07!61;UBERON:0005256!2.24e-07!143;UBERON:0005911!2.28e-07!82;UBERON:0002049!2.95e-07!79;UBERON:0007798!2.95e-07!79;UBERON:0004119!4.37e-07!169;UBERON:0000925!4.37e-07!169;UBERON:0006595!4.37e-07!169;UBERON:0003929!5.78e-07!54;UBERON:0005157!6.14e-07!51;UBERON:0000922!6.75e-07!612;UBERON:0004876!7.55e-07!20;UBERON:0003103!8.09e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0006914;3.00e-16;25!UBERON:0000487;1.04e-15;22!UBERON:0004638;4.21e-14;18!UBERON:0001986;4.21e-14;18!UBERON:0004852;4.21e-14;18!UBERON:0000490;2.70e-13;33!UBERON:0003915;3.60e-12;9!UBERON:0004700;3.60e-12;9!UBERON:0001917;3.60e-12;9!UBERON:0005409;1.63e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006914,1.74e-16,25;UBERON:0000487,7.23e-16,22;UBERON:0004638,3.44e-14,18;UBERON:0001986,3.44e-14,18;UBERON:0004852,3.44e-14,18;UBERON:0003915,4.13e-12,9;UBERON:0004700,4.13e-12,9;UBERON:0001917,4.13e-12,9;UBERON:0003914,2.75e-11,117;UBERON:0003064,1.68e-10,28;UBERON:0004111,7.83e-10,240;UBERON:0000490,9.27e-10,148;UBERON:0004921,2.33e-09,118;UBERON:0000483,3.85e-09,306;UBERON:0000119,7.86e-09,309;UBERON:0001007,1.18e-08,145;UBERON:0001555,1.18e-08,145;UBERON:0007026,1.18e-08,145;UBERON:0005911,1.32e-08,82;UBERON:0000058,1.42e-08,19;UBERON:0005172,3.75e-08,54;UBERON:0005173,3.75e-08,54;UBERON:0003929,6.17e-08,54;UBERON:0009569,1.21e-07,112;UBERON:0002100,1.23e-07,199;UBERON:0005409,5.16e-07,25;UBERON:0005177,5.61e-07,101;UBERON:0007499,7.26e-07,25;UBERON:0000025,9.39e-07,192 | |||
|phase1_expression=0.54503513781167,0,0.140954404095971,0,0,0.872338524100369,0,0,0,0.737201809504527,2.09340350391728,0,0,0,0,0,0,0,0,1.60057375499824,6.32402142857184,3.44800193625897,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260118695119756,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,2.81297636055767,2.89151321907653,1.00267582127178,5.06962816362883,0,0.973269740605272,0.189069634328136,1.55210578223795,1.75669571386252,0.392937226493138,0.364295288292542,0,0,0,0,0,0,0,9.34183314623514,6.02164216574287,8.67851254018986,6.78369530308812,5.03399323451887,16.7822005583441,7.31482382878837,1.29208379584664,1.42306505074684,6.6944122552934,0.805658634218294,0,0.24406205754817,4.77962004449629,22.6839745406893,5.80448233846518,2.69435247151404,5.74318550464943,7.66583187329416,3.79706263827252,2.93122790288652,0,0,0,0,0.25326102332916,0.132409180813219,0,0.709336764396714,5.04609840128076,1.06748995729705,2.96001058100592,2.17847724779836,0.269421344139376,0,1.05950199351452,0.576175924479999,0.234321431833797,0,1.1409436430889,0,0,0.161872944368132,0.140450806702248,0,0.122834317311768,0,4.75201142912821,1.7308685049499,0,0,0.505008341862199,0.125118519871964,0,0.877955241761676,0.612975591598039,1.05166641234618,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,1.77810662500693,0,0,0,0.386521706326594,0,0.573609190778008,1.95157929807353,2.91565490307268,2.90484857173796,2.17688215532278,2.27088765788066,0,0,1.28648187638577,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,5.60967095213783,1.2347220339942,2.94017422771084,0,0,0,11.4780405847809,2.58275720940538,1.88724591328378,0,0,0.703702806881416,0.0925884451585296,0.651616610620649,0,1.44331342025273,0.115930404975077,1.99594780200897,4.76409277611544,1.85194205030644,6.27838702374174,3.1608175918371,4.29243081047436,0,0,0,0,0.335964256397719,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0.126995788584338,1.14596527667483,0,0,0.616964956219941,0,0.285826432630578,0.560655421726804,0.43596006883328,0.07333828582095,0.646358578788889,0,0,0,1.04007436911366,0.514414748524284,0,0,2.28764789853036,1.08524321078289,0,0,3.19852753868291,0,2.1100756394171,0,2.99918973546171,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0,0,0.117141414992713,0,0,0,0,0.921845842708516,0.173767228936166,0,0,0,0,0,0,0,0.30239029332968,0,0.153461973288062,0,0,0,0.321707842287215,1.48418066444991,0,0.177561725313127,0.328508624055237,0.519254429183621,0.116210378459959,2.77976734060731,0.200506470303285,0.184161977871793,5.85553685639494,2.36718518408732,9.70320670699738,0.902399225814824,0.0770153371044148,1.56869953835371,1.46139224653261,0.211103257785751,5.68666920354483,0,3.23873874153209,16.9649977959318,3.25135725052623,2.00675909541941,1.27438136522519,0.831076008928724,0.895499018888713,0,0,6.92415337814251,13.1205858279882,6.83294628795036,2.67906630284078,13.5522807931148,13.8615959866588,0,0.650060246036521,1.6068392984416,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.744316738719335,0.632758849437452,0,0.255897791311334,0.855877976067841,0,0,3.95719406683292,3.29444435683266,1.17812402345686,0.202182481573316,0,0,1.95053495635836,0.243713489631284,0,5.7329962791354,1.69686518344455,0,0,0.66343897524122,0.438450885253763,0,0,0.202910376962704,0.30982349809975,0.281695602532241,0.430234056612155,1.3754865741837,1.07001315444375,0,1.68886108238131,0.987884678879706,0.379473173765715,0.349934720244983,0.384888450902048,0,0,3.38917682796405,0,0,0,0,0,0,0,0,0,0,0,0,13.4598329620616,0,1.47024129588619,0,0.144269212976445,0,2.8696729091188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.05279459102193,0.146508179271894,0,0,6.81926752335391,0,0.296964680832639,0,0,0,0,0,0.422250816255987,1.19548792950642,0.276283915531148,0,0,0,0,6.11104787801823,0.179021174675609,0,0.493217028184668,0,0,0,0.278304294485554,0,0.260427761085233,8.48361999963098,1.44999915086959,1.70690172428249,4.32231205497703,0,0,0,0,0,0.120596438625408,0,2.21158519862449,0.886642856860642,1.09692698576986,0,0.975966209950223,0.461701551022782,4.55768223388005,0.922255617552241,0,0,0.31900115973192,1.19076871422421,0,0,0,0,0,0,0,0,0,0,2.61172493054636,7.49171278599886,0,0,0.530745387020035,1.22206028986725,0,0,0,0.202203398942031,0.802577647298789,0,0,0.391329237864179,0,0.394584402849391,0,0,0.505492637027904,0.60129367765797,1.34794648816421,0,0,0,0,0,0,0,0.195984794828755,0.957651272384428,0.17472666824203,2.75177651954586,0,0,0,0.387956065953678,0,1.58186518546373,0,0,0.316553979779393,1.17330829640882,0.480952921509202,2.98834192635094,3.9961921916426,8.78951544640046,13.8589281360758,0,0,0.124252535565433,0,0,0,0,0,0,0.136905378891993,0,5.58695073845944,0,1.95497680890578,0.687481272035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| |||
|short_description=p4@BMP4 | |||
}} |
Latest revision as of 07:38, 20 September 2015
Short description: | p4@BMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_BMP4_5end |
Coexpression cluster: | C3433_teratocarcinoma_Saos2_signet_rectal_tubular_gastric_Wilms |
Association with transcript: | 45bp_to_ENST00000245451, ENST00000559087_5end |
EntrezGene: | BMP4 |
HGNC: | 1071 |
UniProt: | P12644 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 2.01e-26 | 58 |
barrier cell | 2.01e-26 | 58 |
meso-epithelial cell | 3.04e-20 | 45 |
endothelial cell of vascular tree | 3.09e-19 | 24 |
endothelial cell | 9.85e-18 | 36 |
epithelial cell | 1.00e-17 | 253 |
blood vessel endothelial cell | 3.44e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.44e-14 | 18 |
mesodermal cell | 1.80e-12 | 121 |
endothelial cell of artery | 4.13e-12 | 9 |
squamous epithelial cell | 4.76e-12 | 63 |
embryonic cell | 8.75e-10 | 250 |
mesothelial cell | 5.22e-09 | 19 |
aortic endothelial cell | 1.28e-08 | 6 |
vein endothelial cell | 1.25e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous epithelium | 1.74e-16 | 25 |
simple squamous epithelium | 7.23e-16 | 22 |
blood vessel endothelium | 3.44e-14 | 18 |
endothelium | 3.44e-14 | 18 |
cardiovascular system endothelium | 3.44e-14 | 18 |
endothelial tube | 4.13e-12 | 9 |
arterial system endothelium | 4.13e-12 | 9 |
endothelium of artery | 4.13e-12 | 9 |
epithelial tube | 2.75e-11 | 117 |
intermediate mesoderm | 1.68e-10 | 28 |
anatomical conduit | 7.83e-10 | 240 |
unilaminar epithelium | 9.27e-10 | 148 |
subdivision of digestive tract | 2.33e-09 | 118 |
epithelium | 3.85e-09 | 306 |
cell layer | 7.86e-09 | 309 |
digestive system | 1.18e-08 | 145 |
digestive tract | 1.18e-08 | 145 |
primitive gut | 1.18e-08 | 145 |
endo-epithelium | 1.32e-08 | 82 |
duct | 1.42e-08 | 19 |
abdomen element | 3.75e-08 | 54 |
abdominal segment element | 3.75e-08 | 54 |
gut epithelium | 6.17e-08 | 54 |
subdivision of trunk | 1.21e-07 | 112 |
trunk | 1.23e-07 | 199 |
gastrointestinal system | 5.16e-07 | 25 |
trunk region element | 5.61e-07 | 101 |
epithelial sac | 7.26e-07 | 25 |
tube | 9.39e-07 | 192 |