FFCP PHASE1:Hg19::chr12:70133152..70133182,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:70133152..70133182,+ to FFCP PHASE1:Hg19::chr12:70133152..70133182,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=117177 | |EntrezGene=117177 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16508 | |HGNC=16508 | ||
|TSSclassifier=strong | |||
|UniProt=Q96QF0 | |UniProt=Q96QF0 | ||
|association_with_transcript=0bp_to_ENST00000362025,ENST00000378809,ENST00000550536,NM_175623,NM_175625,uc001svp.2,uc001svq.2,uc001svr.2,uc001svs.2_5end | |||
|cluster_id=chr12:70133152..70133182,+ | |||
|description=CAGE_peak_4_at_RAB3IP_5end | |||
|id=chr12:70133152..70133182,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.95e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0002178;3.11e-09;3!CL:0000167;1.38e-07;1!CL:0000164;1.38e-07;1!CL:0000502;1.38e-07;1!CL:0000172;1.38e-07;1!CL:0000313;1.38e-07;1!CL:0000173;1.38e-07;1!CL:0002563;3.62e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,2.33e-09,3;CL:0000167,1.18e-07,1;CL:0000164,1.18e-07,1;CL:0000502,1.18e-07,1;CL:0000172,1.18e-07,1;CL:0000173,1.18e-07,1;CL:0002351,1.18e-07,1;CL:0000313,1.83e-07,1;CL:0002563,3.97e-07,4 | |||
|ontology_enrichment_development_v019=CL:0002351;1.38e-07;1!UBERON:0008801;3.10e-07;1!UBERON:0004140;3.10e-07;1 | |||
|ontology_enrichment_disease=DOID:305!1.80e-15!106;DOID:0050687!4.39e-11!143;DOID:299!5.40e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:3493;2.06e-13;2!DOID:299;1.80e-11;25!DOID:2152;1.38e-07;1!DOID:4430;1.38e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,1.42e-13,2;DOID:299,1.63e-11,25;DOID:4430,1.18e-07,1;DOID:2152,1.83e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.25e-21!115;UBERON:0004921!1.16e-11!129;UBERON:0004185!1.16e-11!129;UBERON:0000062!2.92e-11!511;UBERON:0001007!2.61e-10!155;UBERON:0001555!2.61e-10!155;UBERON:0007026!2.61e-10!155;UBERON:0001049!3.52e-10!57;UBERON:0005068!3.52e-10!57;UBERON:0006241!3.52e-10!57;UBERON:0007135!3.52e-10!57;UBERON:0004119!3.66e-10!169;UBERON:0000925!3.66e-10!169;UBERON:0006595!3.66e-10!169;UBERON:0000481!8.64e-10!347;UBERON:0005409!5.69e-09!35;UBERON:0002616!8.38e-09!59;UBERON:0000077!1.73e-08!130;UBERON:0005911!2.95e-08!82;UBERON:0000160!7.16e-08!27;UBERON:0003075!9.86e-08!86;UBERON:0007284!9.86e-08!86;UBERON:0000955!2.77e-07!69;UBERON:0006238!2.77e-07!69;UBERON:0000025!2.80e-07!194;UBERON:0004111!3.98e-07!241;UBERON:0002780!4.88e-07!41;UBERON:0001890!4.88e-07!41;UBERON:0006240!4.88e-07!41;UBERON:0000466!5.15e-07!126;UBERON:0003929!5.18e-07!54;UBERON:0002346!5.62e-07!90;UBERON:0005743!5.72e-07!86;UBERON:0004907!7.89e-07!5;UBERON:0003080!9.65e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.70e-16;22!UBERON:0000160;5.67e-12;17!UBERON:0002108;9.83e-12;4!UBERON:0004921;1.45e-11;33!UBERON:0001896;7.90e-09;3!UBERON:0005290;7.90e-09;3!UBERON:0001301;1.38e-07;1!UBERON:0004911;1.38e-07;1!UBERON:0001831;3.10e-07;1!UBERON:0001567;3.10e-07;1!UBERON:0001242;3.62e-07;4!UBERON:0001262;3.62e-07;4!UBERON:0004786;3.62e-07;4!UBERON:0004808;3.62e-07;4!UBERON:0001277;3.62e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.16e-14,25;UBERON:0000160,5.46e-12,17;UBERON:0002108,7.76e-12,4;UBERON:0001896,4.88e-09,3;UBERON:0005290,4.88e-09,3;UBERON:0010096,4.88e-09,3;UBERON:0001301,1.03e-07,1;UBERON:0004911,1.83e-07,1;UBERON:0001242,3.97e-07,4;UBERON:0001262,3.97e-07,4;UBERON:0004786,3.97e-07,4;UBERON:0004808,3.97e-07,4;UBERON:0001277,3.97e-07,4;UBERON:0001831,4.34e-07,1;UBERON:0001567,4.34e-07,1;UBERON:0008801,4.34e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0.087834785693126,1.24430121722827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0.982827216677626,0.590789906681404,0,2.09080345523293,0,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.141775097242386,0.268675568108545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725156697549733,0.200506470303285,0,0,0,0,0,0.231046011313244,0.784349769176855,0,0.527758144464379,0,0,0.215915916102139,0,0,0,0.764628819135115,0,0,0,0.261435451024901,0,0.328014645699706,0.650756789328606,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0,0.510450849978337,0.2023155617111,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213425530045242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55567026775618,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0.552567831062295,1.25966373927138,0,0.123084805461069,0,0.539210106883961,0.895105873378046,0,0,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0.241192877250816,0,2.21158519862449,0.886642856860642,0,0,0.139423744278603,0,0,0,0.0897576444097721,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0.210998064528027,2.61172493054636,2.40300221437699,0.649165919226273,0.995261931078505,3.27292988662355,0,0,0.247127877893006,0,0.337005664903385,0,0.468528891450678,0.182454789215666,0.19566461893209,0,0.394584402849391,0,0,0.063186579628488,0.300646838828985,0,0,0,0,0,0,0,0.347119476670262,0.195984794828755,0.261177619741208,2.79562669187248,0,0.19351266257817,0.0730893170861856,0.328461828212837,0,0.264768380074501,0.451961481561065,0,0,0.0633107959558787,0.782205530939212,0,0.426905989478705,0,4.32271251462318,0.114536596165916,0.171594997861965,0,0,0.235694034616795,0,0,0,0,0.600420288709789,0.273810757783986,0,0,0,0.279282401272254,0,0,0,0.858452096273142,0.223171457441873,1.00775208730089,0,2.32991899054908,0.393915911536118,0.906574442192831,0.674035438541849,0.196854963029498,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,6.14684516933746,3.77673034571986,0.105600336519406,0,0.959575986597226,0,0,0,0,0,0,0,0,0,0,1.17241786942466,0,0.129282956361551,0.52893040697076,0.513260513652988,0.704815022316672,0.961086713109252,1.41483874589699,0.828478110694391,0.496166021811951,0,0.121792598380896,0,0,0,0,0,0.785270481251171,0,0.244052529803926,0.1251909307065,1.72022758707021,1.44207766997908,0.310482014706917,0.138348634936231,0,0,0,0,1.40500471742064,0.579684114443301,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76872455576384,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,1.41696576325585,0,0,0,0.207471757392654,0.161475645631851,0,0,0.235939446695481,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0.261906694481422,0.163771917510097,0.739280431085226,0.337687923091973,0,0.206686796501184,0.126831620387814,0,1.09651553371436,0,0,0.255524855279191,0.535701835878287,0.336283722218824,0.606965604236632,1.13831095675649,0.0887023701626388,0.115233987555779,0,0.679697329768317,0.131545547125698,0.236387681767936,0.333694205676207,0.706437835654626,0.942693539496011,0.840816489941367,0.913158720509496,0.647782773655864,0,1.00067161847319,0,0.23248285073625,0,0,0,0,0,0.430227358820278,0,0,0,0.9164274741762,0,0,2.01339777236026,1.66855397145913,4.14520944939716,0,0,0,0,2.10545517115895,0.596852325484105,0,0.22589216407792,0,0.150962843566674,2.46957305945423,3.27839340755936,0,0,2.59244201811789,0.196308467114945,0,0,0,0,0,0,0.71421575442263,0.352894871715692,0.240724100067505,0.730336388246517,0.458729283404541,0.143339583151451,0.315543124386369,0,0,1.5870805215462,0,0,0,0,0,0,0.101988829741982,0,1.28652859348783,0,0.454672189309436,0.535928260312357,0,0,0,0.476128862927481,0,0,0,0.12729431655633,0.202117188958219,0,0,0.0673520530145875,0.573777643141411,0,0.162806537221949,0,0,0.0898252021065869,0,0,0,0,0,0 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| ||
|short_description=p4@RAB3IP | |||
}} | }} |
Latest revision as of 06:50, 20 September 2015
Short description: | p4@RAB3IP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RAB3IP_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000362025, ENST00000378809, ENST00000550536, NM_175623, NM_175625, uc001svp.2, uc001svq.2, uc001svr.2, uc001svs.2_5end |
EntrezGene: | RAB3IP |
HGNC: | 16508 |
UniProt: | Q96QF0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 2.33e-09 | 3 |
peptide hormone secreting cell | 1.18e-07 | 1 |
enteroendocrine cell | 1.18e-07 | 1 |
type D enteroendocrine cell | 1.18e-07 | 1 |
somatostatin secreting cell | 1.18e-07 | 1 |
pancreatic D cell | 1.18e-07 | 1 |
progenitor cell of endocrine pancreas | 1.18e-07 | 1 |
serous secreting cell | 1.83e-07 | 1 |
intestinal epithelial cell | 3.97e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 3.16e-14 | 25 |
intestine | 5.46e-12 | 17 |
small intestine | 7.76e-12 | 4 |
medulla oblongata | 4.88e-09 | 3 |
myelencephalon | 4.88e-09 | 3 |
future myelencephalon | 4.88e-09 | 3 |
epididymis | 1.03e-07 | 1 |
epithelium of female gonad | 1.83e-07 | 1 |
intestinal mucosa | 3.97e-07 | 4 |
wall of intestine | 3.97e-07 | 4 |
gastrointestinal system mucosa | 3.97e-07 | 4 |
gastrointestinal system epithelium | 3.97e-07 | 4 |
intestinal epithelium | 3.97e-07 | 4 |
parotid gland | 4.34e-07 | 1 |
cheek | 4.34e-07 | 1 |
parotid gland primordium | 4.34e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.42e-13 | 2 |
adenocarcinoma | 1.63e-11 | 25 |
somatostatinoma | 1.18e-07 | 1 |
ovary epithelial cancer | 1.83e-07 | 1 |