FFCP PHASE1:Hg19::chr5:132166509..132166516,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=134549 | |EntrezGene=134549 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24084 | |HGNC=24084 | ||
|TSSclassifier=strong | |||
|UniProt=Q2M3G4 | |UniProt=Q2M3G4 | ||
|association_with_transcript=73bp_to_ENST00000378679,NM_001172700,uc003kxx.2_5end | |association_with_transcript=73bp_to_ENST00000378679,NM_001172700,uc003kxx.2_5end | ||
|cluster_id=chr5:132166509..132166516,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_7_at_SHROOM1_5end | |description=CAGE_peak_7_at_SHROOM1_5end | ||
|id=chr5:132166509..132166516,- | |id=chr5:132166509..132166516,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.57e-10;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.53e-10,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.48e-11;11!UBERON:0009497;9.72e-10;13 | |||
|ontology_enrichment_disease=DOID:305!2.17e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.66e-11!115;UBERON:0001049!2.17e-10!57;UBERON:0005068!2.17e-10!57;UBERON:0006241!2.17e-10!57;UBERON:0007135!2.17e-10!57;UBERON:0002616!6.71e-09!59;UBERON:0000955!9.06e-09!69;UBERON:0006238!9.06e-09!69;UBERON:0000062!1.34e-08!511;UBERON:0003075!1.51e-08!86;UBERON:0007284!1.51e-08!86;UBERON:0001008!1.78e-08!45;UBERON:0005743!2.38e-08!86;UBERON:0001017!2.75e-08!82;UBERON:0003080!5.00e-08!42;UBERON:0002346!8.29e-08!90;UBERON:0006554!1.22e-07!44;UBERON:0005172!1.26e-07!55;UBERON:0005173!1.26e-07!55;UBERON:0000033!1.66e-07!123;UBERON:0002780!3.23e-07!41;UBERON:0001890!3.23e-07!41;UBERON:0006240!3.23e-07!41;UBERON:0001893!3.85e-07!34;UBERON:0000923!7.03e-07!604;UBERON:0005291!7.03e-07!604;UBERON:0006598!7.03e-07!604;UBERON:0002532!7.03e-07!604;UBERON:0000073!7.93e-07!94;UBERON:0001016!7.93e-07!94;UBERON:0002050!8.06e-07!605;UBERON:0005423!8.06e-07!605;UBERON:0003056!8.33e-07!61;UBERON:0000153!9.99e-07!129;UBERON:0007811!9.99e-07!129 | |ontology_enrichment_uberon=UBERON:0007023!4.66e-11!115;UBERON:0001049!2.17e-10!57;UBERON:0005068!2.17e-10!57;UBERON:0006241!2.17e-10!57;UBERON:0007135!2.17e-10!57;UBERON:0002616!6.71e-09!59;UBERON:0000955!9.06e-09!69;UBERON:0006238!9.06e-09!69;UBERON:0000062!1.34e-08!511;UBERON:0003075!1.51e-08!86;UBERON:0007284!1.51e-08!86;UBERON:0001008!1.78e-08!45;UBERON:0005743!2.38e-08!86;UBERON:0001017!2.75e-08!82;UBERON:0003080!5.00e-08!42;UBERON:0002346!8.29e-08!90;UBERON:0006554!1.22e-07!44;UBERON:0005172!1.26e-07!55;UBERON:0005173!1.26e-07!55;UBERON:0000033!1.66e-07!123;UBERON:0002780!3.23e-07!41;UBERON:0001890!3.23e-07!41;UBERON:0006240!3.23e-07!41;UBERON:0001893!3.85e-07!34;UBERON:0000923!7.03e-07!604;UBERON:0005291!7.03e-07!604;UBERON:0006598!7.03e-07!604;UBERON:0002532!7.03e-07!604;UBERON:0000073!7.93e-07!94;UBERON:0001016!7.93e-07!94;UBERON:0002050!8.06e-07!605;UBERON:0005423!8.06e-07!605;UBERON:0003056!8.33e-07!61;UBERON:0000153!9.99e-07!129;UBERON:0007811!9.99e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0002336;3.16e-29;1!UBERON:0000996;3.16e-29;1!UBERON:0011215;3.16e-29;1!UBERON:0001018;3.16e-29;1!UBERON:0002473;3.16e-29;1!UBERON:0005340;3.16e-29;1!UBERON:0003544;3.16e-29;1!UBERON:0005970;3.16e-29;1!UBERON:0002316;3.16e-29;1!UBERON:0001020;3.16e-29;1!UBERON:0002437;3.16e-29;1!UBERON:0002107;2.05e-24;19!UBERON:0006925;2.05e-24;19!UBERON:0002423;1.04e-18;25!UBERON:0005162;2.37e-15;2!UBERON:0000122;2.37e-15;2!UBERON:0002365;4.76e-15;31!UBERON:0002330;4.76e-15;31!UBERON:0002368;1.15e-12;33!UBERON:0000949;1.46e-09;43!UBERON:0005172;6.54e-07;52!UBERON:0005173;6.54e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000996,2.37e-29,1;UBERON:0002336,4.20e-29,1;UBERON:0011215,4.20e-29,1;UBERON:0001018,4.20e-29,1;UBERON:0002473,4.20e-29,1;UBERON:0005340,4.20e-29,1;UBERON:0003544,4.20e-29,1;UBERON:0005970,4.20e-29,1;UBERON:0002316,4.20e-29,1;UBERON:0001020,4.20e-29,1;UBERON:0002437,4.20e-29,1;UBERON:0002107,2.05e-24,19;UBERON:0006925,2.05e-24,19;UBERON:0008836,2.05e-24,19;UBERON:0008835,3.56e-21,22;UBERON:0003894,3.56e-21,22;UBERON:0009854,2.78e-20,23;UBERON:0007499,1.04e-18,25;UBERON:0009497,1.04e-18,25;UBERON:0000015,1.04e-18,25;UBERON:0002423,1.04e-18,25;UBERON:0006235,1.04e-18,25;UBERON:0004161,1.04e-18,25;UBERON:0009856,5.17e-18,26;UBERON:0005162,2.74e-15,2;UBERON:0000122,2.74e-15,2;UBERON:0002365,3.35e-15,31;UBERON:0002330,3.35e-15,31;UBERON:0002368,1.58e-13,35;UBERON:0000949,1.24e-10,45;UBERON:0003929,6.15e-09,54;UBERON:0005172,6.15e-09,54;UBERON:0005173,6.15e-09,54;UBERON:0004921,8.24e-09,118;UBERON:0002530,3.24e-08,59;UBERON:0002417,4.37e-08,60;UBERON:0000916,4.37e-08,60;UBERON:0001007,3.33e-07,145;UBERON:0001555,3.33e-07,145;UBERON:0007026,3.33e-07,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0.672325146451775,0,0,0,0.123121058076788,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0,0.0654895377488563,0.364295288292542,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0.17859945656816,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0.277064115484183,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0.237270619111097,0,0,0,0,0,0,0,0,11.7939266001315,4.72631925345123,0,0.245976877086227,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0.182091168006717,0,0,0,0,0,0.211103257785751,0,0,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.618246069886334,0,0.247528499761764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0,0,0,0,0,0,0.564862804660675,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0.690503839458535,0,0,0,0,0,0,0.0874599999961957,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0,0,0.221158519862449,0,0.219385397153973,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0.225595660617181,0,0,0.37950746544837,0,0,0,0,0,0,0,1.83309043480088,0,0,0.104421949505455,1.01101699471016,0,0.468528891450678,0,0,0.242780379534093,0.394584402849391,0,0,0,0.150323419414493,0.311064574191741,0,0,0,0,0,0.138674673013139,0.347119476670262,0,0,0,0.343972064943233,0.0967563312890851,0.146178634172371,0.0821154570532092,0.0969890164884194,0.176512253383001,0,0,0.19871461170299,0.253243183823515,0,0,0.426905989478705,0,0.288180834308212,0.114536596165916,0.343189995723929,0.14405479798815,0.124252535565433,0.235694034616795,0,0.104602846312333,0.305994652908965,0.288950589901519,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0.709048640765013,0.576911008668165,0.943649613958588,0.590564889088493,0,0,0,0,0.137539436597234,0,0,0,0.182248669974074,0,0.0788057072991982,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0.679872549120754,4.25001477666439,3.97520666736664,0.129282956361551,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,0,0.887432412294818,0.620964029413834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0.214441591374926,0.260994291965212,0,0,0,0,0,0,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0.159633859057151,0.205116364240755,0,0.0691572524642179,0.161475645631851,0,0,0,0.183428598521679,0,0.762764190934334,0,0,0,0,0,0,0.163771917510097,0.147856086217045,0.202612753855184,0,0,0.253663240775627,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0.135939465953663,0.131545547125698,0,0.111231401892069,0.863424021355654,0,0,0.913158720509496,0.431855182437243,0.47775168788705,0.643288897589907,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0.68732060563215,0.31020638566432,0,0.223710863595585,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0.245148321753905,0,0.196308467114945,0,0,0,0,0.0644578879735772,0,0,0.352894871715692,0,0,0,0.286679166302903,0,0,0,0,0,0.462175628631418,0,0.126166424835079,0,0.380095503034311,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0.620597975171371,0,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0.0814032686109745,0,0,0.449126010532934,0,0.122241444182866,0,1.99727032255654,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0.672325146451775,0,0,0,0.123121058076788,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0,0.0654895377488563,0.364295288292542,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0.17859945656816,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0.277064115484183,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0.237270619111097,0,0,0,0,0,0,0,0,11.7939266001315,4.72631925345123,0,0.245976877086227,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0.182091168006717,0,0,0,0,0,0.211103257785751,0,0,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.618246069886334,0,0.247528499761764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0,0,0,0,0,0,0.564862804660675,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0.690503839458535,0,0,0,0,0,0,0.0874599999961957,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0,0,0.221158519862449,0,0.219385397153973,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0.225595660617181,0,0,0.37950746544837,0,0,0,0,0,0,0,1.83309043480088,0,0,0.104421949505455,1.01101699471016,0,0.468528891450678,0,0,0.242780379534093,0.394584402849391,0,0,0,0.150323419414493,0.311064574191741,0,0,0,0,0,0.138674673013139,0.347119476670262,0,0,0,0.343972064943233,0.0967563312890851,0.146178634172371,0.0821154570532092,0.0969890164884194,0.176512253383001,0,0,0.19871461170299,0.253243183823515,0,0,0.426905989478705,0,0.288180834308212,0.114536596165916,0.343189995723929,0.14405479798815,0.124252535565433,0.235694034616795,0,0.104602846312333,0.305994652908965,0.288950589901519,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0.709048640765013,0.576911008668165,0.943649613958588,0.590564889088493,0,0,0,0,0.137539436597234,0,0,0,0.182248669974074,0,0.0788057072991982,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0.679872549120754,4.25001477666439,3.97520666736664,0.129282956361551,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,0,0.887432412294818,0.620964029413834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0.214441591374926,0.260994291965212,0,0,0,0,0,0,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0.159633859057151,0.205116364240755,0,0.0691572524642179,0.161475645631851,0,0,0,0.183428598521679,0,0.762764190934334,0,0,0,0,0,0,0.163771917510097,0.147856086217045,0.202612753855184,0,0,0.253663240775627,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0.135939465953663,0.131545547125698,0,0.111231401892069,0.863424021355654,0,0,0.913158720509496,0.431855182437243,0.47775168788705,0.643288897589907,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0.68732060563215,0.31020638566432,0,0.223710863595585,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0.245148321753905,0,0.196308467114945,0,0,0,0,0.0644578879735772,0,0,0.352894871715692,0,0,0,0.286679166302903,0,0,0,0,0,0.462175628631418,0,0.126166424835079,0,0.380095503034311,0,0,0.0918948995348449,0,0.0757786982182394,0,0,0.620597975171371,0,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0.0814032686109745,0,0,0.449126010532934,0,0.122241444182866,0,1.99727032255654,0,0 | ||
|short_description=p7@SHROOM1 | |short_description=p7@SHROOM1 | ||
}} | }} |
Latest revision as of 06:23, 20 September 2015
Short description: | p7@SHROOM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SHROOM1_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 73bp_to_ENST00000378679, NM_001172700, uc003kxx.2_5end |
EntrezGene: | SHROOM1 |
HGNC: | 24084 |
UniProt: | Q2M3G4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.53e-10 | 12 |