FFCP PHASE1:Hg19::chr3:127783792..127783816,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29927 | |EntrezGene=29927 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=18276 | |HGNC=18276 | ||
|TSSclassifier=strong | |||
|UniProt=B3KME8 | |UniProt=B3KME8 | ||
|association_with_transcript=-43bp_to_AK001689_5end | |association_with_transcript=-43bp_to_AK001689_5end | ||
|cluster_id=chr3:127783792..127783816,+ | |||
|coexpression_cluster_id=C846 | |coexpression_cluster_id=C846 | ||
|description=CAGE_peak_2_at_SEC61A1_5end | |description=CAGE_peak_2_at_SEC61A1_5end | ||
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|ontology_enrichment_celltype=CL:0000055!2.49e-19!180;CL:0000548!7.08e-14!679;CL:0000004!7.08e-14!679;CL:0000255!7.08e-14!679;CL:0000012!1.70e-13!682;CL:0000144!3.07e-12!625;CL:0000057!5.73e-12!75;CL:0000220!2.70e-11!246;CL:0000393!6.02e-11!60;CL:0000211!6.02e-11!60;CL:0002321!6.94e-11!248;CL:0000680!2.72e-10!57;CL:0000056!2.72e-10!57;CL:0000355!2.72e-10!57;CL:0002371!3.12e-10!591;CL:0000187!7.13e-10!54;CL:0000183!9.50e-10!59;CL:0000192!3.13e-09!42;CL:0000514!3.13e-09!42;CL:0000222!1.36e-08!119;CL:0000359!4.51e-07!32;CL:0002334!8.99e-07!12 | |ontology_enrichment_celltype=CL:0000055!2.49e-19!180;CL:0000548!7.08e-14!679;CL:0000004!7.08e-14!679;CL:0000255!7.08e-14!679;CL:0000012!1.70e-13!682;CL:0000144!3.07e-12!625;CL:0000057!5.73e-12!75;CL:0000220!2.70e-11!246;CL:0000393!6.02e-11!60;CL:0000211!6.02e-11!60;CL:0002321!6.94e-11!248;CL:0000680!2.72e-10!57;CL:0000056!2.72e-10!57;CL:0000355!2.72e-10!57;CL:0002371!3.12e-10!591;CL:0000187!7.13e-10!54;CL:0000183!9.50e-10!59;CL:0000192!3.13e-09!42;CL:0000514!3.13e-09!42;CL:0000222!1.36e-08!119;CL:0000359!4.51e-07!32;CL:0002334!8.99e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000192;1.88e-07;43!CL:0002334;6.14e-07;12!CL:0000359;6.19e-07;32 | |ontology_enrichment_celltype_v019=CL:0000192;1.88e-07;43!CL:0002334;6.14e-07;12!CL:0000359;6.19e-07;32 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.49e-12,76;CL:0000393,1.09e-11,61;CL:0000211,1.09e-11,61;CL:0000680,5.65e-11,58;CL:0000056,5.65e-11,58;CL:0000355,5.65e-11,58;CL:0000187,1.63e-10,55;CL:0002321,7.57e-10,250;CL:0000192,8.59e-10,43;CL:0000514,8.59e-10,43;CL:0000222,1.09e-08,121;CL:0000723,3.99e-08,433;CL:0000048,1.17e-07,427;CL:0000359,2.52e-07,32;CL:0002334,2.88e-07,12;CL:0000034,3.26e-07,441 | |||
|ontology_enrichment_development_v019=CL:0000514;1.88e-07;43 | |ontology_enrichment_development_v019=CL:0000514;1.88e-07;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;4.53e-07;14 | |ontology_enrichment_disease_v019=DOID:2394;4.53e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,9.52e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.01e-11!83;UBERON:0002329!5.01e-11!83;UBERON:0003077!5.01e-11!83;UBERON:0003059!5.01e-11!83;UBERON:0007282!5.01e-11!83;UBERON:0009618!5.01e-11!83;UBERON:0007285!5.01e-11!83;UBERON:0004290!1.25e-10!70;UBERON:0001134!8.77e-10!61;UBERON:0002036!8.77e-10!61;UBERON:0003082!8.77e-10!61;UBERON:0002385!2.51e-09!63;UBERON:0001015!2.51e-09!63;UBERON:0000383!2.51e-09!63;UBERON:0005256!2.92e-09!143;UBERON:0002100!2.98e-08!216;UBERON:0000486!3.01e-08!82;UBERON:0001637!1.49e-07!42;UBERON:0003509!1.49e-07!42;UBERON:0004572!1.49e-07!42;UBERON:0003102!2.68e-07!95;UBERON:0002199!4.32e-07!45;UBERON:0002416!4.32e-07!45;UBERON:0000490!6.44e-07!138 | |ontology_enrichment_uberon=UBERON:0000914!5.01e-11!83;UBERON:0002329!5.01e-11!83;UBERON:0003077!5.01e-11!83;UBERON:0003059!5.01e-11!83;UBERON:0007282!5.01e-11!83;UBERON:0009618!5.01e-11!83;UBERON:0007285!5.01e-11!83;UBERON:0004290!1.25e-10!70;UBERON:0001134!8.77e-10!61;UBERON:0002036!8.77e-10!61;UBERON:0003082!8.77e-10!61;UBERON:0002385!2.51e-09!63;UBERON:0001015!2.51e-09!63;UBERON:0000383!2.51e-09!63;UBERON:0005256!2.92e-09!143;UBERON:0002100!2.98e-08!216;UBERON:0000486!3.01e-08!82;UBERON:0001637!1.49e-07!42;UBERON:0003509!1.49e-07!42;UBERON:0004572!1.49e-07!42;UBERON:0003102!2.68e-07!95;UBERON:0002199!4.32e-07!45;UBERON:0002416!4.32e-07!45;UBERON:0000490!6.44e-07!138 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
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| ||
|short_description=p2@SEC61A1 | |short_description=p2@SEC61A1 | ||
}} | }} |
Latest revision as of 06:18, 20 September 2015
Short description: | p2@SEC61A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SEC61A1_5end |
Coexpression cluster: | C846_pancreas_leiomyoma_Smooth_tenocyte_Fibroblast_Adipocyte_Hepatocyte |
Association with transcript: | -43bp_to_AK001689_5end |
EntrezGene: | SEC61A1 |
HGNC: | 18276 |
UniProt: | B3KME8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.49e-12 | 76 |
electrically responsive cell | 1.09e-11 | 61 |
electrically active cell | 1.09e-11 | 61 |
muscle precursor cell | 5.65e-11 | 58 |
myoblast | 5.65e-11 | 58 |
multi-potent skeletal muscle stem cell | 5.65e-11 | 58 |
muscle cell | 1.63e-10 | 55 |
embryonic cell | 7.57e-10 | 250 |
smooth muscle cell | 8.59e-10 | 43 |
smooth muscle myoblast | 8.59e-10 | 43 |
mesodermal cell | 1.09e-08 | 121 |
somatic stem cell | 3.99e-08 | 433 |
multi fate stem cell | 1.17e-07 | 427 |
vascular associated smooth muscle cell | 2.52e-07 | 32 |
preadipocyte | 2.88e-07 | 12 |
stem cell | 3.26e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 4.91e-12 | 78 |
dense mesenchyme tissue | 1.17e-11 | 73 |
somite | 1.21e-11 | 71 |
presomitic mesoderm | 1.21e-11 | 71 |
presumptive segmental plate | 1.21e-11 | 71 |
dermomyotome | 1.21e-11 | 71 |
trunk paraxial mesoderm | 1.21e-11 | 71 |
paraxial mesoderm | 3.69e-11 | 72 |
presumptive paraxial mesoderm | 3.69e-11 | 72 |
skeletal muscle tissue | 1.72e-10 | 62 |
striated muscle tissue | 1.72e-10 | 62 |
myotome | 1.72e-10 | 62 |
trunk mesenchyme | 7.05e-10 | 122 |
muscle tissue | 1.55e-09 | 64 |
musculature | 1.55e-09 | 64 |
musculature of body | 1.55e-09 | 64 |
multilaminar epithelium | 3.04e-09 | 83 |
integument | 1.31e-08 | 46 |
integumental system | 1.31e-08 | 46 |
surface structure | 1.50e-08 | 99 |
artery | 4.33e-08 | 42 |
arterial blood vessel | 4.33e-08 | 42 |
arterial system | 4.33e-08 | 42 |
unilaminar epithelium | 2.08e-07 | 148 |
skin of body | 2.84e-07 | 41 |
mesenchyme | 7.51e-07 | 160 |
entire embryonic mesenchyme | 7.51e-07 | 160 |
mesoderm | 9.64e-07 | 315 |
mesoderm-derived structure | 9.64e-07 | 315 |
presumptive mesoderm | 9.64e-07 | 315 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.52e-07 | 14 |