FFCP PHASE1:Hg19::chr7:96339167..96339197,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=7979 | |EntrezGene=7979 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=10845 | |HGNC=10845 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=F2Z2N6,F2Z2L7,F2Z309 | |UniProt=F2Z2N6,F2Z2L7,F2Z309 | ||
|association_with_transcript=0bp_to_ENST00000417009,ENST00000444799,ENST00000449279,ENST00000476463_5end | |association_with_transcript=0bp_to_ENST00000417009,ENST00000444799,ENST00000449279,ENST00000476463_5end | ||
|cluster_id=chr7:96339167..96339197,- | |||
|description=CAGE_peak_2_at_SHFM1_5end | |description=CAGE_peak_2_at_SHFM1_5end | ||
|id=chr7:96339167..96339197,- | |id=chr7:96339167..96339197,- | ||
Latest revision as of 05:48, 20 September 2015
| Short description: | p2@SHFM1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_SHFM1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000417009, ENST00000444799, ENST00000449279, ENST00000476463_5end |
| EntrezGene: | SHFM1 |
| HGNC: | 10845 |
| UniProt: | F2Z2N6F2Z2L7F2Z309 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@SHFM1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 3.15e-15 | 253 |
| endodermal cell | 2.83e-07 | 58 |
Showing 1 to 2 of 2 entries
| Ontology term | p-value | n |
|---|---|---|
| digestive system | 4.33e-08 | 145 |
| digestive tract | 4.33e-08 | 145 |
| primitive gut | 4.33e-08 | 145 |
| reproductive structure | 5.56e-08 | 59 |
| reproductive system | 5.56e-08 | 59 |
| endoderm-derived structure | 7.88e-08 | 160 |
| endoderm | 7.88e-08 | 160 |
| presumptive endoderm | 7.88e-08 | 160 |
| subdivision of digestive tract | 1.99e-07 | 118 |
Showing 1 to 9 of 9 entries
| Ontology term | p-value | n |
|---|---|---|
| disease of cellular proliferation | 6.35e-55 | 239 |
| cancer | 3.13e-54 | 235 |
| cell type cancer | 8.07e-42 | 143 |
| carcinoma | 4.68e-32 | 106 |
| organ system cancer | 5.06e-21 | 137 |
| adenocarcinoma | 3.00e-07 | 25 |
| respiratory system cancer | 4.06e-07 | 16 |
| lung cancer | 4.75e-07 | 15 |
| germ cell and embryonal cancer | 6.92e-07 | 22 |
| germ cell cancer | 6.92e-07 | 22 |
Showing 1 to 10 of 10 entries
