FFCP PHASE1:Hg19::chr16:10868999..10869019,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=780776 | |EntrezGene=780776 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20398 | |HGNC=20398 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-46bp_to_uc002dae.1_5end | |association_with_transcript=-46bp_to_uc002dae.1_5end | ||
|cluster_id=chr16:10868999..10869019,- | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_5_at_FAM18A_5end | |description=CAGE_peak_5_at_FAM18A_5end | ||
|id=chr16:10868999..10869019,- | |id=chr16:10868999..10869019,- | ||
|ontology_enrichment_celltype=CL:0000453!1.38e-22!5;CL:0000990!2.11e-12!8;CL:0000451!4.42e-10!10;CL:0001014!6.76e-10!2;CL:0001016!6.76e-10!2;CL:0000945!9.98e-10!24;CL:0000826!9.98e-10!24;CL:0000159!3.25e-09!2 | |ontology_enrichment_celltype=CL:0000453!1.38e-22!5;CL:0000990!2.11e-12!8;CL:0000451!4.42e-10!10;CL:0001014!6.76e-10!2;CL:0001016!6.76e-10!2;CL:0000945!9.98e-10!24;CL:0000826!9.98e-10!24;CL:0000159!3.25e-09!2 | ||
|ontology_enrichment_celltype_v019=CL:0000453;2.64e-59;5!CL:0000990;5.06e-33;8!CL:0000451;4.91e-27;10!CL:0001014;2.20e-24;2!CL:0001016;2.20e-24;2!CL:0000946;4.23e-13;1!CL:0000786;4.23e-13;1!CL:0000319;8.15e-13;1!CL:0000840;9.09e-09;5!CL:0000159;4.83e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,3.16e-59,5;CL:0000990,5.59e-33,8;CL:0000451,5.32e-27,10;CL:0001014,2.64e-24,2;CL:0001016,2.64e-24,2;CL:0000946,4.77e-13,1;CL:0000786,4.77e-13,1;CL:0000980,4.77e-13,1;CL:0000319,7.68e-13,1;CL:0000840,9.63e-09,5;CL:0001029,9.63e-09,5;CL:0000785,3.70e-07,2;CL:0000955,3.70e-07,2;CL:0000818,3.70e-07,2;CL:0000954,3.70e-07,2;CL:0000816,3.70e-07,2;CL:0000159,4.69e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.43e-25;29!CL:0000954;3.48e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3030;8.15e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,7.68e-13,1;DOID:305,7.89e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.62e-38!9;UBERON:0001557!3.92e-30!19;UBERON:0000072!6.77e-11!46;UBERON:0004177!2.03e-09!7;UBERON:0000065!4.02e-09!53;UBERON:0008947!9.04e-08!38;UBERON:0003258!9.04e-08!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.56e-81;9!UBERON:0001557;2.56e-81;9!UBERON:0000072;6.49e-18;37!UBERON:0000065;9.15e-15;44!UBERON:0001004;1.23e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.51e-81,9;UBERON:0001557,2.54e-38,19;UBERON:0008947,8.41e-19,38;UBERON:0003258,8.41e-19,38;UBERON:0000072,4.76e-15,47;UBERON:0000065,5.43e-13,54;UBERON:0001004,3.00e-09,74;UBERON:0001041,9.79e-08,87 | |||
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| ||
|short_description=p5@FAM18A | |short_description=p5@FAM18A | ||
}} | }} |
Latest revision as of 04:43, 20 September 2015
Short description: | p5@FAM18A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_FAM18A_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | -46bp_to_uc002dae.1_5end |
EntrezGene: | FAM18A |
HGNC: | 20398 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 3.16e-59 | 5 |
conventional dendritic cell | 5.59e-33 | 8 |
dendritic cell | 5.32e-27 | 10 |
CD1a-positive Langerhans cell | 2.64e-24 | 2 |
immature CD1a-positive Langerhans cell | 2.64e-24 | 2 |
antibody secreting cell | 4.77e-13 | 1 |
plasma cell | 4.77e-13 | 1 |
plasmablast | 4.77e-13 | 1 |
mucus secreting cell | 7.68e-13 | 1 |
immature conventional dendritic cell | 9.63e-09 | 5 |
common dendritic progenitor | 9.63e-09 | 5 |
mature B cell | 3.70e-07 | 2 |
pre-B-II cell | 3.70e-07 | 2 |
transitional stage B cell | 3.70e-07 | 2 |
small pre-B-II cell | 3.70e-07 | 2 |
immature B cell | 3.70e-07 | 2 |
seromucus secreting cell | 4.69e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.51e-81 | 9 |
upper respiratory tract | 2.54e-38 | 19 |
respiratory primordium | 8.41e-19 | 38 |
endoderm of foregut | 8.41e-19 | 38 |
segment of respiratory tract | 4.76e-15 | 47 |
respiratory tract | 5.43e-13 | 54 |
respiratory system | 3.00e-09 | 74 |
foregut | 9.79e-08 | 87 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 7.68e-13 | 1 |
carcinoma | 7.89e-08 | 106 |