FFCP PHASE1:Hg19::chr20:12989840..12989866,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55304 | |EntrezGene=55304 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16253 | |HGNC=16253 | ||
|TSSclassifier=strong | |||
|UniProt=C9JC36 | |UniProt=C9JC36 | ||
|association_with_transcript=18bp_to_ENST00000378194_5end | |association_with_transcript=18bp_to_ENST00000378194_5end | ||
|cluster_id=chr20:12989840..12989866,+ | |||
|coexpression_cluster_id=C34 | |||
|description=CAGE_peak_2_at_SPTLC3_5end | |description=CAGE_peak_2_at_SPTLC3_5end | ||
|id=chr20:12989840..12989866,+ | |id=chr20:12989840..12989866,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!3.40e-13!511;UBERON:0007023!2.73e-12!115;UBERON:0000481!1.36e-09!347;UBERON:0001007!5.16e-09!155;UBERON:0001555!5.16e-09!155;UBERON:0007026!5.16e-09!155;UBERON:0004119!9.74e-09!169;UBERON:0000925!9.74e-09!169;UBERON:0006595!9.74e-09!169;UBERON:0000468!1.01e-08!659;UBERON:0000467!9.49e-08!625;UBERON:0000480!1.36e-07!626;UBERON:0000922!1.87e-07!612;UBERON:0000077!2.42e-07!130;UBERON:0002050!3.86e-07!605;UBERON:0005423!3.86e-07!605;UBERON:0000923!5.56e-07!604;UBERON:0005291!5.56e-07!604;UBERON:0006598!5.56e-07!604;UBERON:0002532!5.56e-07!604;UBERON:0004921!8.08e-07!129;UBERON:0004185!8.08e-07!129 | |ontology_enrichment_uberon=UBERON:0000062!3.40e-13!511;UBERON:0007023!2.73e-12!115;UBERON:0000481!1.36e-09!347;UBERON:0001007!5.16e-09!155;UBERON:0001555!5.16e-09!155;UBERON:0007026!5.16e-09!155;UBERON:0004119!9.74e-09!169;UBERON:0000925!9.74e-09!169;UBERON:0006595!9.74e-09!169;UBERON:0000468!1.01e-08!659;UBERON:0000467!9.49e-08!625;UBERON:0000480!1.36e-07!626;UBERON:0000922!1.87e-07!612;UBERON:0000077!2.42e-07!130;UBERON:0002050!3.86e-07!605;UBERON:0005423!3.86e-07!605;UBERON:0000923!5.56e-07!604;UBERON:0005291!5.56e-07!604;UBERON:0006598!5.56e-07!604;UBERON:0002532!5.56e-07!604;UBERON:0004921!8.08e-07!129;UBERON:0004185!8.08e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0001044;7.49e-08;6!UBERON:0003293;7.49e-08;6!UBERON:0003294;7.49e-08;6!UBERON:0010047;7.49e-08;6!UBERON:0003408;7.49e-08;6!UBERON:0000167;7.49e-08;6!UBERON:0004905;4.98e-07;8!UBERON:0000982;4.98e-07;8!UBERON:0004770;4.98e-07;8!UBERON:0011135;6.41e-07;5!UBERON:0002216;6.41e-07;5!UBERON:0011134;6.41e-07;5!UBERON:0002209;6.41e-07;5!UBERON:0002213;6.41e-07;5!UBERON:0007844;6.41e-07;5!UBERON:0011138;6.41e-07;5!UBERON:0001130;6.41e-07;5!UBERON:0001066;6.41e-07;5!UBERON:0001468;6.41e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.11e-08,14;UBERON:0000158,1.11e-08,14;UBERON:0001044,5.91e-08,6;UBERON:0003293,5.91e-08,6;UBERON:0003294,5.91e-08,6;UBERON:0010047,5.91e-08,6;UBERON:0000167,5.91e-08,6;UBERON:0004175,1.26e-07,25;UBERON:0004905,2.36e-07,8;UBERON:0000982,2.36e-07,8;UBERON:0004770,2.36e-07,8;UBERON:0003124,2.85e-07,7;UBERON:0011135,3.48e-07,5;UBERON:0002216,3.48e-07,5;UBERON:0011134,3.48e-07,5;UBERON:0002209,3.48e-07,5;UBERON:0002213,3.48e-07,5;UBERON:0005856,3.48e-07,5;UBERON:0005866,3.48e-07,5;UBERON:0005863,3.48e-07,5;UBERON:0007844,3.48e-07,5;UBERON:0011138,3.48e-07,5;UBERON:0001130,3.48e-07,5;UBERON:0001066,3.48e-07,5;UBERON:0001468,3.48e-07,5;UBERON:0001007,9.46e-07,145;UBERON:0001555,9.46e-07,145;UBERON:0007026,9.46e-07,145 | |||
|phase1_expression=1.09007027562334,0.642301571672949,0.986680828671798,0,0,0.872338524100369,0,0,0.522371256399677,0.491467873003018,0,1.52908960491121,0.527533956456907,9.0349437660834,2.65117900582333,0,0.602694528023977,0,0,0.246242116153576,0,0.313454721478088,0.286235987131057,0.547497700291537,0.125542639594803,0,0,0,0.393364276848904,0.383829398097213,0.154816123316076,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0.236482229888585,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0.434377689410233,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,0.790152254325231,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0.296573126324121,0.267540828089713,0,0,0,0,0,0,0,0.950452044448374,0,0,0,0,0,0.201606743224732,0,0.144824403882799,4.87613732627923,0.670700859703636,0.511450247374121,0.361439152384566,0,0.869079113764942,0,0.486634870302636,2.45790524626576,0.886917589850256,1.22968699970376,0.72038491523742,0.728590576585084,1.11235332835329,0.324547393654683,0.174129737299267,0.398873881556595,0.476981248610684,0,0,0,0,0,1.13061588384802,0,0,0,0,0,0,0,0,0,0,0,0.357198913136319,0.44905874525234,0.112611480483322,0,0,0,0,0,0.436094052142534,0.993943903390637,0.759783069987479,1.05927344650575,1.14734648299525,1.77334191099179,0,0,0.49333509683432,1.55605517699883,0,0.490385709340376,0.908144565869588,1.15235184896,0,0,0,0.597794722207204,0,0,0.561803226808994,1.42907919878425,1.10550885580591,1.34323515528495,0,0,0,0,0.673344455816265,0.375355559615893,0.277064115484183,0.438977620880838,0.30648779579902,0.150238058906597,0,0.179389635688862,0,0.211931901159562,0,0.206105058476878,0.772921620136887,0.37223371266318,0.843881661206331,0,0.252433774244115,0.184099797284599,2.58633690910099,0,0.10075209822764,0.508681776931463,0.386521706326594,0,0.573609190778008,0.121973706129595,0,0,0.10366105501537,0.756962552626885,0,0,0,0,1.85747171212792,0.721879481669586,0.828147600278907,1.51726221070292,0.241011029883482,0.772057809126758,1.08939722046203,0.474541238222193,1.07865046528132,0.98110732562673,0.38474715694639,0,0,0,0,2.53510069643662,0,2.36315962672562,0,6.02643348861256,1.88724591328378,2.63400684980701,0,1.00528972411631,1.20364978706088,0,0,0,0.231860809950154,0.70445216541493,0,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0.16798212819886,0.708875486211932,0.53735113621709,0.290633938513962,0,0.985326475791887,0.792435906119034,0.207328115540772,0.288239906833923,0.37872730027914,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0.87192013766656,1.0267360014933,0,0,0,0,0,0.257207374262142,0,0.266422179016099,0.285955987316295,0,0.823240336780769,0,0.355391948742546,0,3.01439377059586,2.61460037580088,3.09916272664377,0,0.502257091432126,0,0.479249710983165,1.14861935834114,0,1.88215698667853,3.28762116080613,0.895304816199478,0,0.197030760201927,0,0,0,1.30139853857622,0,0.335032530668698,0,0,0,0,6.74803204455269,2.50085260529839,1.89885516589815,0.207970861530807,1.78428988797162,0.157702415033935,0.937131319941706,1.80567659836631,0,1.03473071292505,0,0.553107505625109,0.695068915744663,0,0,0,0,0,0.606255142892519,4.99306318531491,2.11673205330776,0,0.460385919864187,0.280660094433074,0.384417447767103,0,0,0,0.154209693802656,0.355123450626254,1.06765302817952,0.519254429183621,0.581051892299796,2.90062679019893,0,0.184161977871793,0.574072240823034,0,0.655622074797121,0.451199612907412,0.308061348417659,0,0,0.105551628892876,0,0,0.215915916102139,0,0.270946437543853,0.501689773854853,0,0,0.223874754722178,0,0,0,0,0,52.5509159403384,0.457847324091717,0.247528499761764,1.14853107599234,1.95018073810956,0,0.386682873168488,0.462145851343933,0.921022048356777,0.275673144969061,2.36324538710202,1.16013355131383,0.511359764496605,0.445160178233687,0.165284915360978,0,0.255225424989168,0,0.464845549297286,0,1.3940745403212,0,0,0,0,0.143124886741991,1.86079184679834,2.84741482246853,0.38126038784765,0,0.42793898803392,0.318203247925937,0,0.359744915166629,0.274537029736055,0.824686816419805,0,0,0,0,0.487426979262569,0,0,0.282810863907425,0,0.551365343546124,0.66343897524122,0,0.578775534266688,3.27947376023316,0,0,0,0.430234056612155,0.0982490410131212,0,1.06428319221179,1.68886108238131,1.31717957183961,0,0,0.288666338176536,0,0,49.7079268101394,0,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,1.71528151186722,0,0.28853842595289,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,1.02555725490326,0,0,3.97790605528978,21.4870036263921,5.3453642549875,29.7945881036255,0.994147647766298,0.422008249231538,0.779160935160341,0,0,1.39473591775749,0.828851746593443,0,0.715880777515084,0,0,1.70749867179921,0,0,0.789147245095469,0,0,0.969332746095218,0.74214478529481,0,0,0.787139999965761,2.17499872630438,1.137934482855,1.27126825146383,0.709163045303809,0,0,0,0,0.482385754501632,0,0.552896299656123,0.295547618953547,3.94893714877151,0.10893846351899,2.78847488557207,2.00070672109872,0.341826167541004,3.4584585658209,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| ||
|short_description=p2@SPTLC3 | |short_description=p2@SPTLC3 | ||
}} | }} |
Latest revision as of 04:25, 20 September 2015
Short description: | p2@SPTLC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SPTLC3_5end |
Coexpression cluster: | C34_placenta_chorionic_choriocarcinoma_mesothelioma_Wilms_Smooth_bile |
Association with transcript: | 18bp_to_ENST00000378194_5end |
EntrezGene: | SPTLC3 |
HGNC: | 16253 |
UniProt: | C9JC36 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.11e-08 | 14 |
membranous layer | 1.11e-08 | 14 |
saliva-secreting gland | 5.91e-08 | 6 |
gland of oral region | 5.91e-08 | 6 |
gland of foregut | 5.91e-08 | 6 |
oral gland | 5.91e-08 | 6 |
oral cavity | 5.91e-08 | 6 |
internal genitalia | 1.26e-07 | 25 |
articulation | 2.36e-07 | 8 |
skeletal joint | 2.36e-07 | 8 |
articular system | 2.36e-07 | 8 |
chorion | 2.85e-07 | 7 |
intervertebral cartilage | 3.48e-07 | 5 |
symphysis | 3.48e-07 | 5 |
nonsynovial joint | 3.48e-07 | 5 |
fibrous joint | 3.48e-07 | 5 |
cartilaginous joint | 3.48e-07 | 5 |
developing mesenchymal condensation | 3.48e-07 | 5 |
pre-cartilage condensation | 3.48e-07 | 5 |
cartilaginous condensation | 3.48e-07 | 5 |
cartilage element | 3.48e-07 | 5 |
post-cranial axial skeletal system | 3.48e-07 | 5 |
vertebral column | 3.48e-07 | 5 |
intervertebral disk | 3.48e-07 | 5 |
intervertebral joint | 3.48e-07 | 5 |
digestive system | 9.46e-07 | 145 |
digestive tract | 9.46e-07 | 145 |
primitive gut | 9.46e-07 | 145 |