FFCP PHASE1:Hg19::chr11:73363887..73363920,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=58473 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19079 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=222bp_to_ENST00000540157_5end | |||
|cluster_id=chr11:73363887..73363920,+ | |||
|coexpression_cluster_id=C327 | |||
|description=CAGE_peak_13_at_PLEKHB1_5end | |||
|id=chr11:73363887..73363920,+ | |||
|ontology_enrichment_celltype=CL:0000148!1.07e-12!10;CL:0000541!1.07e-12!10;CL:0000147!7.53e-09!14 | |||
|ontology_enrichment_celltype_v019=CL:0000148;5.15e-25;10!CL:0002567;2.17e-21;3!CL:0000147;5.51e-18;14!CL:0000710;1.08e-12;20!CL:0000075;1.79e-09;27!CL:0000047;6.67e-09;2!CL:0002077;7.04e-08;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,5.65e-25,10;CL:0000541,5.65e-25,10;CL:0002567,2.41e-21,3;CL:0000147,5.89e-18,14;CL:0000710,1.13e-12,20;CL:0000075,1.85e-09,27;CL:0002077,1.47e-07,34 | |||
|ontology_enrichment_development_v019=UBERON:0006222;1.78e-16;1 | |||
|ontology_enrichment_disease=DOID:1909!1.11e-08!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;6.27e-32;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,6.27e-32,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.26e-60!57;UBERON:0005068!1.26e-60!57;UBERON:0006241!1.26e-60!57;UBERON:0007135!1.26e-60!57;UBERON:0005743!5.26e-53!86;UBERON:0001017!7.06e-53!82;UBERON:0003075!7.55e-48!86;UBERON:0007284!7.55e-48!86;UBERON:0002616!1.90e-47!59;UBERON:0000073!3.69e-47!94;UBERON:0001016!3.69e-47!94;UBERON:0002346!2.54e-45!90;UBERON:0002780!1.44e-44!41;UBERON:0001890!1.44e-44!41;UBERON:0006240!1.44e-44!41;UBERON:0000955!2.47e-44!69;UBERON:0006238!2.47e-44!69;UBERON:0003080!2.24e-43!42;UBERON:0001893!1.30e-37!34;UBERON:0002020!1.94e-37!34;UBERON:0003528!1.94e-37!34;UBERON:0007023!6.88e-36!115;UBERON:0002791!4.86e-35!33;UBERON:0003056!3.42e-33!61;UBERON:0001869!2.79e-32!32;UBERON:0004121!1.75e-28!169;UBERON:0000033!3.13e-28!123;UBERON:0000924!1.35e-27!173;UBERON:0006601!1.35e-27!173;UBERON:0000153!1.63e-26!129;UBERON:0007811!1.63e-26!129;UBERON:0002308!1.80e-23!9;UBERON:0000125!1.80e-23!9;UBERON:0002619!9.04e-22!22;UBERON:0002298!4.29e-21!8;UBERON:0000956!6.55e-19!25;UBERON:0000203!6.55e-19!25;UBERON:0002420!4.08e-18!9;UBERON:0007245!4.08e-18!9;UBERON:0010009!4.08e-18!9;UBERON:0010011!4.08e-18!9;UBERON:0000454!4.08e-18!9;UBERON:0003076!1.02e-17!15;UBERON:0003057!1.02e-17!15;UBERON:0009663!1.84e-17!7;UBERON:0001950!8.05e-17!20;UBERON:0000025!6.11e-15!194;UBERON:0001896!8.17e-12!3;UBERON:0005290!8.17e-12!3;UBERON:0010096!8.17e-12!3;UBERON:0000349!1.69e-11!5;UBERON:0002240!2.05e-11!3;UBERON:0004111!3.57e-11!241;UBERON:0006331!4.86e-11!3;UBERON:0000988!5.57e-11!3;UBERON:0000483!2.69e-10!309;UBERON:0004733!3.65e-10!12;UBERON:0002028!3.65e-10!12;UBERON:0007277!3.65e-10!12;UBERON:0000119!4.20e-10!312;UBERON:0004732!2.51e-09!13;UBERON:0000475!4.64e-09!365;UBERON:0000200!5.08e-09!6;UBERON:0000477!1.01e-08!286;UBERON:0001954!2.63e-08!2;UBERON:0003022!2.63e-08!2;UBERON:0002421!2.63e-08!2;UBERON:0002600!2.63e-08!2;UBERON:0000369!2.64e-08!4;UBERON:0002435!2.64e-08!4;UBERON:0000204!2.64e-08!4;UBERON:0010082!2.64e-08!4;UBERON:0001894!3.06e-08!7;UBERON:0006222!3.06e-08!7;UBERON:0001875!4.79e-08!2;UBERON:0006514!4.79e-08!2;UBERON:0002148!8.33e-08!2;UBERON:0009662!8.33e-08!2;UBERON:0002360!2.22e-07!2;UBERON:0000094!2.22e-07!2;UBERON:0007645!2.22e-07!2;UBERON:0005174!5.37e-07!5;UBERON:0001137!5.37e-07!5;UBERON:0001871!6.31e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;4.02e-21;3!UBERON:0005290;4.02e-21;3!UBERON:0002336;1.78e-16;1!UBERON:0011215;1.78e-16;1!UBERON:0001018;1.78e-16;1!UBERON:0002473;1.78e-16;1!UBERON:0005340;1.78e-16;1!UBERON:0003544;1.78e-16;1!UBERON:0005970;1.78e-16;1!UBERON:0002316;1.78e-16;1!UBERON:0001020;1.78e-16;1!UBERON:0002437;1.78e-16;1!UBERON:0002298;4.60e-11;6!UBERON:0005162;6.67e-09;2!UBERON:0000122;6.67e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,2.96e-21,3;UBERON:0005290,2.96e-21,3;UBERON:0010096,2.96e-21,3;UBERON:0002336,3.07e-16,1;UBERON:0011215,3.07e-16,1;UBERON:0001018,3.07e-16,1;UBERON:0002473,3.07e-16,1;UBERON:0005340,3.07e-16,1;UBERON:0003544,3.07e-16,1;UBERON:0005970,3.07e-16,1;UBERON:0002316,3.07e-16,1;UBERON:0001020,3.07e-16,1;UBERON:0002437,3.07e-16,1;UBERON:0002298,3.95e-11,6;UBERON:0003076,9.19e-10,15;UBERON:0003057,9.19e-10,15;UBERON:0005162,8.74e-09,2;UBERON:0000122,8.74e-09,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571481048629521,1.14596527667483,3.51652341630141,0,0.411309970813294,3.30377363628309,5.14487578735041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27047312111232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.723578631752448,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01101699471016,0,1.1713222286267,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12990370390266,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.684526894459965,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0.164831716762333,0.0674035438541849,0,0,0.795229689809303,0.817220436669454,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646414781807753,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,1.14681839138014,0.776503360757966,1.61450647647597,0,0,4.85277176133273,2.85465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0.205116364240755,0,0.345786262321089,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472763092328763,0,0.206686796501184,0.507326481551255,0,0,0,0,0,0.535701835878287,0,0,0.227662191351298,0,0,0,0.611727596791485,0.394636641377094,0,0,0,0.471346769748006,0,0,0,0,0.643288897589907,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0.233939463462106,0,0,0,0,0,0,0,0,0,0,0.785233868459781,1.18818560130834,0.4226557275834,0,0,0,0,0,0,0,0,0,0.716697915757256,0,0.747906392100062,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0.930896962757057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p13@PLEKHB1 | |||
}} |
Latest revision as of 03:27, 20 September 2015
Short description: | p13@PLEKHB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_PLEKHB1_5end |
Coexpression cluster: | C327_Melanocyte_corpus_thalamus_substantia_melanoma_globus_optic |
Association with transcript: | 222bp_to_ENST00000540157_5end |
EntrezGene: | PLEKHB1 |
HGNC: | 19079 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 5.65e-25 | 10 |
melanoblast | 5.65e-25 | 10 |
light melanocyte | 2.41e-21 | 3 |
pigment cell | 5.89e-18 | 14 |
neurecto-epithelial cell | 1.13e-12 | 20 |
columnar/cuboidal epithelial cell | 1.85e-09 | 27 |
ecto-epithelial cell | 1.47e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 2.96e-21 | 3 |
myelencephalon | 2.96e-21 | 3 |
future myelencephalon | 2.96e-21 | 3 |
corpus callosum | 3.07e-16 | 1 |
central nervous system cell part cluster | 3.07e-16 | 1 |
axon tract | 3.07e-16 | 1 |
intercerebral commissure | 3.07e-16 | 1 |
dorsal telencephalic commissure | 3.07e-16 | 1 |
brain white matter | 3.07e-16 | 1 |
brain commissure | 3.07e-16 | 1 |
white matter | 3.07e-16 | 1 |
nervous system commissure | 3.07e-16 | 1 |
cerebral hemisphere white matter | 3.07e-16 | 1 |
brainstem | 3.95e-11 | 6 |
posterior neural tube | 9.19e-10 | 15 |
chordal neural plate | 9.19e-10 | 15 |
multi cell component structure | 8.74e-09 | 2 |
neuron projection bundle | 8.74e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
melanoma | 6.27e-32 | 2 |