FFCP PHASE1:Hg19::chr17:38171895..38171901,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:38171895..38171901,+
|short_description=p4@CSF3
|description=CAGE_peak_4_at_CSF3_5end
|association_with_transcript=195bp_to_ENST00000331769,ENST0000047988...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1440 | |EntrezGene=1440 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2438 | |HGNC=2438 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N4W3 | |UniProt=Q8N4W3 | ||
|association_with_transcript=195bp_to_ENST00000331769,ENST00000479880_5end | |||
|cluster_id=chr17:38171895..38171901,+ | |||
|coexpression_cluster_id=C1432 | |||
|description=CAGE_peak_4_at_CSF3_5end | |||
|id=chr17:38171895..38171901,+ | |||
|ontology_enrichment_celltype=CL:0002539!2.10e-14!10;CL:0000359!2.14e-13!32;CL:0000680!6.25e-10!57;CL:0000056!6.25e-10!57;CL:0000355!6.25e-10!57;CL:0000192!2.94e-09!42;CL:0000514!2.94e-09!42;CL:0002166!1.52e-07!3;CL:0002621!1.90e-07!3;CL:0000187!2.76e-07!54;CL:0002582!8.99e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002539;8.71e-20;10!CL:0000359;3.24e-19;32!CL:0002593;7.65e-13;2!CL:0000317;1.01e-11;2!CL:1000448;1.01e-11;2!CL:0002308;1.01e-11;2!CL:0002140;1.01e-11;2!CL:0000192;1.29e-09;43!CL:0002138;1.67e-09;6!CL:0002592;7.63e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002539,8.16e-20,10;CL:0000359,1.29e-19,32;CL:0000192,4.71e-14,43;CL:0000514,4.71e-14,43;CL:0002593,7.89e-13,2;CL:0000317,9.06e-12,2;CL:1000448,9.06e-12,2;CL:0002308,9.06e-12,2;CL:0002140,9.06e-12,2;CL:0000187,1.58e-10,55;CL:0000680,7.10e-10,58;CL:0000056,7.10e-10,58;CL:0000355,7.10e-10,58;CL:0005020,1.65e-09,6;CL:0002138,1.65e-09,6;CL:0005022,1.65e-09,6;CL:0000393,2.75e-09,61;CL:0000211,2.75e-09,61;CL:0002592,7.79e-09,3 | |||
|ontology_enrichment_development_v019=CL:0000514;1.29e-09;43!CL:0005022;1.67e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004573!1.26e-14!33;UBERON:0004571!1.26e-14!33;UBERON:0004237!2.10e-14!10;UBERON:0004695!2.10e-14!10;UBERON:0002111!2.10e-14!10;UBERON:0004178!2.10e-14!10;UBERON:0000486!2.18e-14!82;UBERON:0000914!5.77e-13!83;UBERON:0002329!5.77e-13!83;UBERON:0003077!5.77e-13!83;UBERON:0003059!5.77e-13!83;UBERON:0007282!5.77e-13!83;UBERON:0009618!5.77e-13!83;UBERON:0007285!5.77e-13!83;UBERON:0004290!1.23e-12!70;UBERON:0001134!2.13e-11!61;UBERON:0002036!2.13e-11!61;UBERON:0003082!2.13e-11!61;UBERON:0002385!7.39e-11!63;UBERON:0001015!7.39e-11!63;UBERON:0000383!7.39e-11!63;UBERON:0001637!1.46e-10!42;UBERON:0003509!1.46e-10!42;UBERON:0004572!1.46e-10!42;UBERON:0001135!4.75e-09!15;UBERON:0000055!1.00e-08!69;UBERON:0000947!1.81e-07!21;UBERON:0010191!1.81e-07!21;UBERON:0001949!1.90e-07!3;UBERON:0001981!3.32e-07!60;UBERON:0007500!3.32e-07!60;UBERON:0004537!3.32e-07!60;UBERON:0006965!3.32e-07!60;UBERON:0002049!5.50e-07!79;UBERON:0007798!5.50e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0004237;8.71e-20;10!UBERON:0004695;8.71e-20;10!UBERON:0002111;8.71e-20;10!UBERON:0004178;8.71e-20;10!UBERON:0004573;9.55e-17;33!UBERON:0004571;9.55e-17;33!UBERON:0002119;2.23e-13;4!UBERON:0001135;5.19e-13;15!UBERON:0002456;7.65e-13;2!UBERON:0002419;1.01e-11;2!UBERON:0007771;1.01e-11;2!UBERON:0003297;1.01e-11;2!UBERON:0001821;1.01e-11;2!UBERON:0003487;1.01e-11;2!UBERON:0001820;1.01e-11;2!UBERON:0001637;8.31e-10;42!UBERON:0003509;8.31e-10;42!UBERON:0004572;8.31e-10;42!UBERON:0000947;3.94e-09;21!UBERON:0010191;3.94e-09;21!UBERON:0003498;7.63e-09;3!UBERON:0005985;7.63e-09;3!UBERON:0001621;7.63e-09;3!UBERON:0000055;1.12e-08;65!UBERON:0002385;1.23e-07;31!UBERON:0001015;1.23e-07;31!UBERON:0000383;1.23e-07;31!UBERON:0001473;3.15e-07;8!UBERON:0004536;3.15e-07;8!UBERON:0006558;3.15e-07;8!UBERON:0002134;4.38e-07;1!UBERON:0005208;4.38e-07;1!UBERON:0004145;4.38e-07;1!UBERON:0005946;4.38e-07;1!UBERON:0005965;4.38e-07;1!UBERON:0002078;4.38e-07;1!UBERON:0000992;4.74e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004237,8.16e-20,10;UBERON:0004695,8.16e-20,10;UBERON:0002111,8.16e-20,10;UBERON:0004178,8.16e-20,10;UBERON:0004573,5.87e-19,33;UBERON:0004571,5.87e-19,33;UBERON:0000055,6.74e-16,68;UBERON:0001637,1.94e-14,42;UBERON:0003509,1.94e-14,42;UBERON:0004572,1.94e-14,42;UBERON:0002049,1.90e-13,78;UBERON:0007798,1.90e-13,78;UBERON:0002119,1.93e-13,4;UBERON:0001135,4.97e-13,15;UBERON:0002456,7.89e-13,2;UBERON:0002419,9.06e-12,2;UBERON:0007771,9.06e-12,2;UBERON:0003297,9.06e-12,2;UBERON:0001821,9.06e-12,2;UBERON:0003487,9.06e-12,2;UBERON:0001820,9.06e-12,2;UBERON:0005089,9.06e-12,2;UBERON:0005088,9.06e-12,2;UBERON:0007500,1.30e-11,59;UBERON:0001981,1.30e-11,59;UBERON:0004537,1.30e-11,59;UBERON:0006965,1.30e-11,59;UBERON:0001134,6.75e-11,62;UBERON:0002036,6.75e-11,62;UBERON:0003082,6.75e-11,62;UBERON:0002329,6.87e-11,71;UBERON:0003059,6.87e-11,71;UBERON:0007282,6.87e-11,71;UBERON:0004290,6.87e-11,71;UBERON:0009618,6.87e-11,71;UBERON:0003077,1.06e-10,72;UBERON:0007285,1.06e-10,72;UBERON:0007524,1.61e-10,73;UBERON:0000486,1.65e-10,83;UBERON:0002385,1.75e-10,64;UBERON:0001015,1.75e-10,64;UBERON:0000383,1.75e-10,64;UBERON:0004535,4.16e-10,109;UBERON:0001009,9.54e-10,112;UBERON:0007503,1.12e-09,78;UBERON:0000947,3.83e-09,21;UBERON:0010191,3.83e-09,21;UBERON:0004872,5.08e-09,83;UBERON:0001621,7.79e-09,3;UBERON:0001048,2.34e-07,160;UBERON:0001473,3.12e-07,8;UBERON:0004536,3.12e-07,8;UBERON:0006558,3.12e-07,8;UBERON:0002134,4.51e-07,1;UBERON:0005208,4.51e-07,1;UBERON:0005946,4.51e-07,1;UBERON:0005965,4.51e-07,1;UBERON:0002078,4.51e-07,1;UBERON:0000992,4.75e-07,13;UBERON:0005418,7.57e-07,1;UBERON:0001389,7.57e-07,1;UBERON:0000026,7.57e-07,1;UBERON:0008784,7.57e-07,1;UBERON:0006058,7.57e-07,1;UBERON:0003663,7.57e-07,1;UBERON:0004256,7.57e-07,1;UBERON:0004708,7.57e-07,1;UBERON:0002101,7.57e-07,1;UBERON:0004709,7.57e-07,1;UBERON:0002529,7.57e-07,1;UBERON:0010538,7.57e-07,1;UBERON:0003661,7.57e-07,1;UBERON:0010890,7.57e-07,1;UBERON:0002471,7.57e-07,1;UBERON:0001383,7.57e-07,1;UBERON:0004357,7.57e-07,1;UBERON:0004347,7.57e-07,1;UBERON:0005420,7.57e-07,1;UBERON:0005732,7.57e-07,1;UBERON:0010758,7.57e-07,1;UBERON:0010707,7.57e-07,1;UBERON:0000978,7.57e-07,1;UBERON:0002103,7.57e-07,1;UBERON:0001665,7.57e-07,1;UBERON:0003823,7.57e-07,1;UBERON:0000154,7.57e-07,1;UBERON:0010709,7.57e-07,1;UBERON:0005733,7.57e-07,1;UBERON:0005730,7.57e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,2.41077811209591,0.730310090387373,2.43966399395253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0.306083892370903,0,0.639337125799041,0,0,0,1.16083695451434,0.56738522469114,4.9825779919646,0,0,0,0.605399502633369,0,2.21523671208619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,2.72746120590835,0.286804595389004,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0.0925884451585296,0,1.03993478527958,0,0,0,7.94015462685906,18.0564349904878,6.08813287150714,0,0,0,0,0,1.87467667973554,0.335964256397719,0.992425680696705,0.0895585227028483,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0.61642896765115,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,1.55776328755086,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,1.72279661398852,1.30012049207304,0,0.096670718292122,0,0,0,0,0,0,0,0.165284915360978,0,0.127612712494584,0,0,0.31481234683064,0,3.69640296211307,5.85536633348724,2.60979897622522,0.9266210955196,0.143124886741991,0,0,0,0,0,0,7.8494864019923,0,0,0,4.24583211303964,0,9.26768603725758,0,9.99225307488266,4.22600587027022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,3.26672954583968,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,1.00177834520615,0,0,0.19924798825107,0.276283915531148,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,3.58936512288407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28144895081234,2.35806457649499,0,0,0,0,0,0,0,0.612691153526923,0.327872630709804,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,3.69637874974085,2.54874827461924,35.0846427487612,1.70789252563885,0,0,0,0,0,0.406870733204662,1.27294061441792,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327543835020193,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,1.94228651156368,0.923965261706223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0,0.124149428591716,0,0,0,0.435433495793923,0,0,1.86477734020959,0,0.407016343054873,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,2.41077811209591,0.730310090387373,2.43966399395253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0.306083892370903,0,0.639337125799041,0,0,0,1.16083695451434,0.56738522469114,4.9825779919646,0,0,0,0.605399502633369,0,2.21523671208619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,2.72746120590835,0.286804595389004,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0.0925884451585296,0,1.03993478527958,0,0,0,7.94015462685906,18.0564349904878,6.08813287150714,0,0,0,0,0,1.87467667973554,0.335964256397719,0.992425680696705,0.0895585227028483,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0.61642896765115,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,1.55776328755086,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,1.72279661398852,1.30012049207304,0,0.096670718292122,0,0,0,0,0,0,0,0.165284915360978,0,0.127612712494584,0,0,0.31481234683064,0,3.69640296211307,5.85536633348724,2.60979897622522,0.9266210955196,0.143124886741991,0,0,0,0,0,0,7.8494864019923,0,0,0,4.24583211303964,0,9.26768603725758,0,9.99225307488266,4.22600587027022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,3.26672954583968,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,1.00177834520615,0,0,0.19924798825107,0.276283915531148,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,3.58936512288407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28144895081234,2.35806457649499,0,0,0,0,0,0,0,0.612691153526923,0.327872630709804,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,3.69637874974085,2.54874827461924,35.0846427487612,1.70789252563885,0,0,0,0,0,0.406870733204662,1.27294061441792,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327543835020193,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,1.94228651156368,0.923965261706223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0,0.124149428591716,0,0,0,0.435433495793923,0,0,1.86477734020959,0,0.407016343054873,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@CSF3 | |||
}} | }} |
Latest revision as of 23:35, 19 September 2015
Short description: | p4@CSF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CSF3_5end |
Coexpression cluster: | C1432_mesenchymal_Smooth_Lymphatic_Preadipocyte_Sebocyte_CD14_anaplastic |
Association with transcript: | 195bp_to_ENST00000331769, ENST00000479880_5end |
EntrezGene: | CSF3 |
HGNC: | 2438 |
UniProt: | Q8N4W3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
aortic smooth muscle cell | 8.16e-20 | 10 |
vascular associated smooth muscle cell | 1.29e-19 | 32 |
smooth muscle cell | 4.71e-14 | 43 |
smooth muscle myoblast | 4.71e-14 | 43 |
smooth muscle cell of the internal thoracic artery | 7.89e-13 | 2 |
sebum secreting cell | 9.06e-12 | 2 |
epithelial cell of sweat gland | 9.06e-12 | 2 |
epithelial cell of skin gland | 9.06e-12 | 2 |
acinar cell of sebaceous gland | 9.06e-12 | 2 |
muscle cell | 1.58e-10 | 55 |
muscle precursor cell | 7.10e-10 | 58 |
myoblast | 7.10e-10 | 58 |
multi-potent skeletal muscle stem cell | 7.10e-10 | 58 |
lymphangioblast | 1.65e-09 | 6 |
endothelial cell of lymphatic vessel | 1.65e-09 | 6 |
vascular lymphangioblast | 1.65e-09 | 6 |
electrically responsive cell | 2.75e-09 | 61 |
electrically active cell | 2.75e-09 | 61 |
smooth muscle cell of the coronary artery | 7.79e-09 | 3 |