FFCP PHASE1:Hg19::chr6:83073021..83073072,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7162 | |EntrezGene=7162 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12004 | |HGNC=12004 | ||
|TSSclassifier=strong | |||
|UniProt=A8K555,Q13641 | |UniProt=A8K555,Q13641 | ||
|association_with_transcript=98bp_to_ENST00000535040,NM_006670,uc003pjn.3_5end | |association_with_transcript=98bp_to_ENST00000535040,NM_006670,uc003pjn.3_5end | ||
|cluster_id=chr6:83073021..83073072,+ | |||
|coexpression_cluster_id=C4630 | |coexpression_cluster_id=C4630 | ||
|description=CAGE_peak_4_at_TPBG_5end | |description=CAGE_peak_4_at_TPBG_5end | ||
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|ontology_enrichment_celltype=CL:0000055!3.88e-34!180;CL:0000057!2.77e-22!75;CL:0000680!5.39e-17!57;CL:0000056!5.39e-17!57;CL:0000355!5.39e-17!57;CL:0000187!3.58e-16!54;CL:0002620!2.04e-15!23;CL:0000183!3.03e-14!59;CL:0000393!1.26e-13!60;CL:0000211!1.26e-13!60;CL:0000192!1.10e-12!42;CL:0000514!1.10e-12!42;CL:0000359!5.12e-08!32;CL:0000188!1.98e-07!9;CL:0002334!4.10e-07!12 | |ontology_enrichment_celltype=CL:0000055!3.88e-34!180;CL:0000057!2.77e-22!75;CL:0000680!5.39e-17!57;CL:0000056!5.39e-17!57;CL:0000355!5.39e-17!57;CL:0000187!3.58e-16!54;CL:0002620!2.04e-15!23;CL:0000183!3.03e-14!59;CL:0000393!1.26e-13!60;CL:0000211!1.26e-13!60;CL:0000192!1.10e-12!42;CL:0000514!1.10e-12!42;CL:0000359!5.12e-08!32;CL:0000188!1.98e-07!9;CL:0002334!4.10e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002620;6.20e-25;23!CL:0000723;4.39e-13;61!CL:0000134;1.05e-11;55!CL:0000034;2.65e-11;69!CL:0000187;4.30e-11;55!CL:0000048;7.18e-11;58!CL:0000057;7.86e-11;73!CL:0002551;2.71e-10;6!CL:0000188;8.79e-10;9!CL:0000192;1.83e-09;43!CL:0002570;2.77e-09;8!CL:0002539;4.48e-09;10!CL:0000393;6.08e-09;61!CL:0000211;6.08e-09;61!CL:0000359;3.33e-08;32!CL:0000569;5.18e-07;4!CL:0002320;7.32e-07;188 | |ontology_enrichment_celltype_v019=CL:0002620;6.20e-25;23!CL:0000723;4.39e-13;61!CL:0000134;1.05e-11;55!CL:0000034;2.65e-11;69!CL:0000187;4.30e-11;55!CL:0000048;7.18e-11;58!CL:0000057;7.86e-11;73!CL:0002551;2.71e-10;6!CL:0000188;8.79e-10;9!CL:0000192;1.83e-09;43!CL:0002570;2.77e-09;8!CL:0002539;4.48e-09;10!CL:0000393;6.08e-09;61!CL:0000211;6.08e-09;61!CL:0000359;3.33e-08;32!CL:0000569;5.18e-07;4!CL:0002320;7.32e-07;188 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.66e-25,76;CL:0002620,6.23e-25,23;CL:0000034,3.88e-19,441;CL:0000723,4.15e-18,433;CL:0000048,1.77e-17,427;CL:0000187,2.22e-17,55;CL:0000680,5.28e-16,58;CL:0000056,5.28e-16,58;CL:0000355,5.28e-16,58;CL:0000393,9.05e-15,61;CL:0000211,9.05e-15,61;CL:0000192,4.28e-12,43;CL:0000514,4.28e-12,43;CL:0002551,2.63e-10,6;CL:0000188,9.13e-10,9;CL:0002570,2.39e-09,8;CL:0002539,4.78e-09,10;CL:0000359,2.24e-08,32;CL:0000134,2.94e-07,354;CL:0000569,3.92e-07,4;CL:0000011,3.92e-07,4;CL:0000219,7.34e-07,386;CL:0002320,9.04e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000355;1.82e-09;58!CL:0000514;1.83e-09;43!CL:0000011;5.18e-07;4 | |ontology_enrichment_development_v019=CL:0000355;1.82e-09;58!CL:0000514;1.83e-09;43!CL:0000011;5.18e-07;4 | ||
|ontology_enrichment_disease=DOID:2394!2.90e-11!14 | |ontology_enrichment_disease=DOID:2394!2.90e-11!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;3.98e-19;14!DOID:17;1.82e-08;5!DOID:450;1.82e-08;5!DOID:66;1.82e-08;5!DOID:423;1.82e-08;5!DOID:0080000;1.82e-08;5!DOID:11722;1.82e-08;5!DOID:120;4.76e-08;27!DOID:193;2.99e-07;29 | |ontology_enrichment_disease_v019=DOID:2394;3.98e-19;14!DOID:17;1.82e-08;5!DOID:450;1.82e-08;5!DOID:66;1.82e-08;5!DOID:423;1.82e-08;5!DOID:0080000;1.82e-08;5!DOID:11722;1.82e-08;5!DOID:120;4.76e-08;27!DOID:193;2.99e-07;29 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,3.64e-19,14;DOID:17,2.12e-08,5;DOID:450,2.12e-08,5;DOID:66,2.12e-08,5;DOID:423,2.12e-08,5;DOID:0080000,2.12e-08,5;DOID:11722,2.12e-08,5;DOID:120,4.57e-08,27;DOID:193,2.88e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.82e-22!83;UBERON:0002329!1.82e-22!83;UBERON:0003077!1.82e-22!83;UBERON:0003059!1.82e-22!83;UBERON:0007282!1.82e-22!83;UBERON:0009618!1.82e-22!83;UBERON:0007285!1.82e-22!83;UBERON:0004290!2.19e-21!70;UBERON:0000486!4.11e-20!82;UBERON:0003102!2.21e-17!95;UBERON:0002199!1.35e-16!45;UBERON:0002416!1.35e-16!45;UBERON:0001134!2.04e-15!61;UBERON:0002036!2.04e-15!61;UBERON:0003082!2.04e-15!61;UBERON:0002385!5.33e-15!63;UBERON:0001015!5.33e-15!63;UBERON:0000383!5.33e-15!63;UBERON:0002097!1.00e-14!40;UBERON:0000475!1.17e-12!365;UBERON:0005256!1.15e-09!143;UBERON:0002067!1.68e-08!9;UBERON:0004016!1.68e-08!9;UBERON:0010083!1.68e-08!9;UBERON:0004573!6.21e-08!33;UBERON:0004571!6.21e-08!33;UBERON:0001637!1.33e-07!42;UBERON:0003509!1.33e-07!42;UBERON:0004572!1.33e-07!42 | |ontology_enrichment_uberon=UBERON:0000914!1.82e-22!83;UBERON:0002329!1.82e-22!83;UBERON:0003077!1.82e-22!83;UBERON:0003059!1.82e-22!83;UBERON:0007282!1.82e-22!83;UBERON:0009618!1.82e-22!83;UBERON:0007285!1.82e-22!83;UBERON:0004290!2.19e-21!70;UBERON:0000486!4.11e-20!82;UBERON:0003102!2.21e-17!95;UBERON:0002199!1.35e-16!45;UBERON:0002416!1.35e-16!45;UBERON:0001134!2.04e-15!61;UBERON:0002036!2.04e-15!61;UBERON:0003082!2.04e-15!61;UBERON:0002385!5.33e-15!63;UBERON:0001015!5.33e-15!63;UBERON:0000383!5.33e-15!63;UBERON:0002097!1.00e-14!40;UBERON:0000475!1.17e-12!365;UBERON:0005256!1.15e-09!143;UBERON:0002067!1.68e-08!9;UBERON:0004016!1.68e-08!9;UBERON:0010083!1.68e-08!9;UBERON:0004573!6.21e-08!33;UBERON:0004571!6.21e-08!33;UBERON:0001637!1.33e-07!42;UBERON:0003509!1.33e-07!42;UBERON:0004572!1.33e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0002097;7.16e-16;41!UBERON:0002199;2.09e-15;46!UBERON:0002416;2.09e-15;46!UBERON:0002067;8.14e-14;9!UBERON:0003102;1.02e-13;50!UBERON:0002385;6.94e-11;31!UBERON:0001015;6.94e-11;31!UBERON:0000383;6.94e-11;31!UBERON:0000992;8.49e-10;13!UBERON:0000947;1.89e-09;21!UBERON:0010191;1.89e-09;21!UBERON:0002118;1.94e-09;5!UBERON:0004237;4.48e-09;10!UBERON:0004695;4.48e-09;10!UBERON:0002111;4.48e-09;10!UBERON:0004178;4.48e-09;10!UBERON:0004573;1.64e-08;33!UBERON:0004571;1.64e-08;33!UBERON:0001135;3.07e-08;15!UBERON:0001013;6.56e-08;14!UBERON:0002119;1.84e-07;4!UBERON:0002384;5.00e-07;198 | |ontology_enrichment_uberon_v019=UBERON:0002097;7.16e-16;41!UBERON:0002199;2.09e-15;46!UBERON:0002416;2.09e-15;46!UBERON:0002067;8.14e-14;9!UBERON:0003102;1.02e-13;50!UBERON:0002385;6.94e-11;31!UBERON:0001015;6.94e-11;31!UBERON:0000383;6.94e-11;31!UBERON:0000992;8.49e-10;13!UBERON:0000947;1.89e-09;21!UBERON:0010191;1.89e-09;21!UBERON:0002118;1.94e-09;5!UBERON:0004237;4.48e-09;10!UBERON:0004695;4.48e-09;10!UBERON:0002111;4.48e-09;10!UBERON:0004178;4.48e-09;10!UBERON:0004573;1.64e-08;33!UBERON:0004571;1.64e-08;33!UBERON:0001135;3.07e-08;15!UBERON:0001013;6.56e-08;14!UBERON:0002119;1.84e-07;4!UBERON:0002384;5.00e-07;198 | ||
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| ||
|short_description=p4@TPBG | |short_description=p4@TPBG | ||
}} | }} |
Latest revision as of 23:26, 19 September 2015
Short description: | p4@TPBG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TPBG_5end |
Coexpression cluster: | C4630_mesenchymal_Smooth_Adipocyte_Fibroblast_Preadipocyte_Skeletal_Sertoli |
Association with transcript: | 98bp_to_ENST00000535040, NM_006670, uc003pjn.3_5end |
EntrezGene: | TPBG |
HGNC: | 12004 |
UniProt: | A8K555Q13641 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.66e-25 | 76 |
skin fibroblast | 6.23e-25 | 23 |
stem cell | 3.88e-19 | 441 |
somatic stem cell | 4.15e-18 | 433 |
multi fate stem cell | 1.77e-17 | 427 |
muscle cell | 2.22e-17 | 55 |
muscle precursor cell | 5.28e-16 | 58 |
myoblast | 5.28e-16 | 58 |
multi-potent skeletal muscle stem cell | 5.28e-16 | 58 |
electrically responsive cell | 9.05e-15 | 61 |
electrically active cell | 9.05e-15 | 61 |
smooth muscle cell | 4.28e-12 | 43 |
smooth muscle myoblast | 4.28e-12 | 43 |
fibroblast of dermis | 2.63e-10 | 6 |
cell of skeletal muscle | 9.13e-10 | 9 |
mesenchymal stem cell of adipose | 2.39e-09 | 8 |
aortic smooth muscle cell | 4.78e-09 | 10 |
vascular associated smooth muscle cell | 2.24e-08 | 32 |
mesenchymal cell | 2.94e-07 | 354 |
cardiac mesenchymal cell | 3.92e-07 | 4 |
migratory trunk neural crest cell | 3.92e-07 | 4 |
motile cell | 7.34e-07 | 386 |
connective tissue cell | 9.04e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.64e-19 | 14 |
musculoskeletal system disease | 2.12e-08 | 5 |
myotonic disease | 2.12e-08 | 5 |
muscle tissue disease | 2.12e-08 | 5 |
myopathy | 2.12e-08 | 5 |
muscular disease | 2.12e-08 | 5 |
myotonic dystrophy | 2.12e-08 | 5 |
female reproductive organ cancer | 4.57e-08 | 27 |
reproductive organ cancer | 2.88e-07 | 29 |