FFCP PHASE1:Hg19::chr5:121413171..121413182,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4015 | |EntrezGene=4015 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6664 | |HGNC=6664 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-4bp_to_ENST00000508067_5end | |association_with_transcript=-4bp_to_ENST00000508067_5end | ||
|cluster_id=chr5:121413171..121413182,- | |||
|coexpression_cluster_id=C421 | |coexpression_cluster_id=C421 | ||
|description=CAGE_peak_5_at_LOX_5end | |description=CAGE_peak_5_at_LOX_5end | ||
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|ontology_enrichment_celltype=CL:0000055!5.67e-41!180;CL:0000057!2.56e-24!75;CL:0000222!4.63e-18!119;CL:0000680!1.26e-17!57;CL:0000056!1.26e-17!57;CL:0000355!1.26e-17!57;CL:0000187!1.96e-16!54;CL:0000192!1.47e-15!42;CL:0000514!1.47e-15!42;CL:0000393!1.88e-15!60;CL:0000211!1.88e-15!60;CL:0000183!3.92e-15!59;CL:0000359!5.70e-13!32;CL:0000144!8.37e-12!625;CL:0002371!1.44e-10!591;CL:0002620!1.63e-10!23;CL:0000048!1.69e-10!430;CL:0000220!4.06e-10!246;CL:0002321!6.53e-10!248;CL:0000723!1.15e-09!436;CL:0000034!2.15e-09!444;CL:0002334!7.56e-09!12;CL:0000548!2.41e-08!679;CL:0000004!2.41e-08!679;CL:0000255!2.41e-08!679;CL:0000012!4.12e-08!682 | |ontology_enrichment_celltype=CL:0000055!5.67e-41!180;CL:0000057!2.56e-24!75;CL:0000222!4.63e-18!119;CL:0000680!1.26e-17!57;CL:0000056!1.26e-17!57;CL:0000355!1.26e-17!57;CL:0000187!1.96e-16!54;CL:0000192!1.47e-15!42;CL:0000514!1.47e-15!42;CL:0000393!1.88e-15!60;CL:0000211!1.88e-15!60;CL:0000183!3.92e-15!59;CL:0000359!5.70e-13!32;CL:0000144!8.37e-12!625;CL:0002371!1.44e-10!591;CL:0002620!1.63e-10!23;CL:0000048!1.69e-10!430;CL:0000220!4.06e-10!246;CL:0002321!6.53e-10!248;CL:0000723!1.15e-09!436;CL:0000034!2.15e-09!444;CL:0002334!7.56e-09!12;CL:0000548!2.41e-08!679;CL:0000004!2.41e-08!679;CL:0000255!2.41e-08!679;CL:0000012!4.12e-08!682 | ||
|ontology_enrichment_celltype_v019=CL:0000359;9.53e-14;32!CL:0002620;1.80e-13;23!CL:0000192;1.71e-11;43!CL:0002334;7.53e-11;12!CL:0000057;1.03e-10;73!CL:0002320;3.60e-09;188!CL:0000187;4.02e-09;55!CL:0000134;1.78e-08;55!CL:0000048;1.58e-07;58!CL:0000499;1.70e-07;28!CL:0000723;2.66e-07;61!CL:0000393;2.76e-07;61!CL:0000211;2.76e-07;61!CL:0002494;5.70e-07;16 | |ontology_enrichment_celltype_v019=CL:0000359;9.53e-14;32!CL:0002620;1.80e-13;23!CL:0000192;1.71e-11;43!CL:0002334;7.53e-11;12!CL:0000057;1.03e-10;73!CL:0002320;3.60e-09;188!CL:0000187;4.02e-09;55!CL:0000134;1.78e-08;55!CL:0000048;1.58e-07;58!CL:0000499;1.70e-07;28!CL:0000723;2.66e-07;61!CL:0000393;2.76e-07;61!CL:0000211;2.76e-07;61!CL:0002494;5.70e-07;16 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.55e-29,76;CL:0000048,2.07e-20,427;CL:0000723,2.46e-19,433;CL:0000680,3.10e-18,58;CL:0000056,3.10e-18,58;CL:0000355,3.10e-18,58;CL:0000034,5.82e-18,441;CL:0000187,8.94e-17,55;CL:0000192,2.87e-16,43;CL:0000514,2.87e-16,43;CL:0000222,1.40e-15,121;CL:0000393,3.30e-15,61;CL:0000211,3.30e-15,61;CL:0000359,1.69e-14,32;CL:0002620,1.65e-13,23;CL:0002334,7.10e-11,12;CL:0000499,1.35e-07,28;CL:0002320,1.40e-07,361;CL:0000134,4.61e-07,354;CL:0002494,5.46e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000514;1.71e-11;43!CL:0000355;2.32e-09;58 | |ontology_enrichment_development_v019=CL:0000514;1.71e-11;43!CL:0000355;2.32e-09;58 | ||
|ontology_enrichment_disease=DOID:2394!1.60e-08!14 | |ontology_enrichment_disease=DOID:2394!1.60e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;6.65e-10;14 | |ontology_enrichment_disease_v019=DOID:2394;6.65e-10;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,6.78e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0004290!1.88e-19!70;UBERON:0000914!4.77e-19!83;UBERON:0002329!4.77e-19!83;UBERON:0003077!4.77e-19!83;UBERON:0003059!4.77e-19!83;UBERON:0007282!4.77e-19!83;UBERON:0009618!4.77e-19!83;UBERON:0007285!4.77e-19!83;UBERON:0001134!2.35e-17!61;UBERON:0002036!2.35e-17!61;UBERON:0003082!2.35e-17!61;UBERON:0002049!3.02e-17!79;UBERON:0007798!3.02e-17!79;UBERON:0002385!4.94e-17!63;UBERON:0001015!4.94e-17!63;UBERON:0000383!4.94e-17!63;UBERON:0004872!9.83e-16!84;UBERON:0000486!1.06e-15!82;UBERON:0000055!4.94e-15!69;UBERON:0001981!2.56e-14!60;UBERON:0007500!2.56e-14!60;UBERON:0004537!2.56e-14!60;UBERON:0006965!2.56e-14!60;UBERON:0005256!6.11e-14!143;UBERON:0001637!3.34e-13!42;UBERON:0003509!3.34e-13!42;UBERON:0004572!3.34e-13!42;UBERON:0004535!3.63e-13!110;UBERON:0000490!4.57e-13!138;UBERON:0001009!1.91e-12!113;UBERON:0003914!2.08e-11!118;UBERON:0004573!4.81e-11!33;UBERON:0004571!4.81e-11!33;UBERON:0002100!4.32e-09!216;UBERON:0003102!4.27e-07!95;UBERON:0000475!4.33e-07!365;UBERON:0002199!7.93e-07!45;UBERON:0002416!7.93e-07!45 | |ontology_enrichment_uberon=UBERON:0004290!1.88e-19!70;UBERON:0000914!4.77e-19!83;UBERON:0002329!4.77e-19!83;UBERON:0003077!4.77e-19!83;UBERON:0003059!4.77e-19!83;UBERON:0007282!4.77e-19!83;UBERON:0009618!4.77e-19!83;UBERON:0007285!4.77e-19!83;UBERON:0001134!2.35e-17!61;UBERON:0002036!2.35e-17!61;UBERON:0003082!2.35e-17!61;UBERON:0002049!3.02e-17!79;UBERON:0007798!3.02e-17!79;UBERON:0002385!4.94e-17!63;UBERON:0001015!4.94e-17!63;UBERON:0000383!4.94e-17!63;UBERON:0004872!9.83e-16!84;UBERON:0000486!1.06e-15!82;UBERON:0000055!4.94e-15!69;UBERON:0001981!2.56e-14!60;UBERON:0007500!2.56e-14!60;UBERON:0004537!2.56e-14!60;UBERON:0006965!2.56e-14!60;UBERON:0005256!6.11e-14!143;UBERON:0001637!3.34e-13!42;UBERON:0003509!3.34e-13!42;UBERON:0004572!3.34e-13!42;UBERON:0004535!3.63e-13!110;UBERON:0000490!4.57e-13!138;UBERON:0001009!1.91e-12!113;UBERON:0003914!2.08e-11!118;UBERON:0004573!4.81e-11!33;UBERON:0004571!4.81e-11!33;UBERON:0002100!4.32e-09!216;UBERON:0003102!4.27e-07!95;UBERON:0000475!4.33e-07!365;UBERON:0002199!7.93e-07!45;UBERON:0002416!7.93e-07!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.57e-11;33!UBERON:0004571;1.57e-11;33!UBERON:0001637;3.64e-10;42!UBERON:0003509;3.64e-10;42!UBERON:0004572;3.64e-10;42!UBERON:0002384;9.18e-09;198!UBERON:0002385;1.86e-07;31!UBERON:0001015;1.86e-07;31!UBERON:0000383;1.86e-07;31!UBERON:0002097;4.54e-07;41!UBERON:0004457;4.78e-07;9!UBERON:0000042;4.78e-07;9!UBERON:0000947;5.83e-07;21!UBERON:0010191;5.83e-07;21!UBERON:0002199;7.00e-07;46!UBERON:0002416;7.00e-07;46 | |ontology_enrichment_uberon_v019=UBERON:0004573;1.57e-11;33!UBERON:0004571;1.57e-11;33!UBERON:0001637;3.64e-10;42!UBERON:0003509;3.64e-10;42!UBERON:0004572;3.64e-10;42!UBERON:0002384;9.18e-09;198!UBERON:0002385;1.86e-07;31!UBERON:0001015;1.86e-07;31!UBERON:0000383;1.86e-07;31!UBERON:0002097;4.54e-07;41!UBERON:0004457;4.78e-07;9!UBERON:0000042;4.78e-07;9!UBERON:0000947;5.83e-07;21!UBERON:0010191;5.83e-07;21!UBERON:0002199;7.00e-07;46!UBERON:0002416;7.00e-07;46 | ||
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| ||
|short_description=p5@LOX | |short_description=p5@LOX | ||
}} | }} |
Latest revision as of 23:20, 19 September 2015
Short description: | p5@LOX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LOX_5end |
Coexpression cluster: | C421_Smooth_Fibroblast_epithelioid_hepatic_Sertoli_Ewing_tenocyte |
Association with transcript: | -4bp_to_ENST00000508067_5end |
EntrezGene: | LOX |
HGNC: | 6664 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.55e-29 | 76 |
multi fate stem cell | 2.07e-20 | 427 |
somatic stem cell | 2.46e-19 | 433 |
muscle precursor cell | 3.10e-18 | 58 |
myoblast | 3.10e-18 | 58 |
multi-potent skeletal muscle stem cell | 3.10e-18 | 58 |
stem cell | 5.82e-18 | 441 |
muscle cell | 8.94e-17 | 55 |
smooth muscle cell | 2.87e-16 | 43 |
smooth muscle myoblast | 2.87e-16 | 43 |
mesodermal cell | 1.40e-15 | 121 |
electrically responsive cell | 3.30e-15 | 61 |
electrically active cell | 3.30e-15 | 61 |
vascular associated smooth muscle cell | 1.69e-14 | 32 |
skin fibroblast | 1.65e-13 | 23 |
preadipocyte | 7.10e-11 | 12 |
stromal cell | 1.35e-07 | 28 |
connective tissue cell | 1.40e-07 | 361 |
mesenchymal cell | 4.61e-07 | 354 |
cardiocyte | 5.46e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.78e-10 | 14 |