FFCP PHASE1:Hg19::chr1:94586634..94586639,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=24 | |EntrezGene=24 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34 | |HGNC=34 | ||
|TSSclassifier=strong | |||
|UniProt=F5H6E5 | |UniProt=F5H6E5 | ||
|association_with_transcript=41bp_to_ENST00000535735_5end | |association_with_transcript=41bp_to_ENST00000535735_5end | ||
|cluster_id=chr1:94586634..94586639,- | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_5_at_ABCA4_5end | |description=CAGE_peak_5_at_ABCA4_5end | ||
|id=chr1:94586634..94586639,- | |id=chr1:94586634..94586639,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.62e-23;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001896!1.81e-54!3;UBERON:0005290!1.81e-54!3;UBERON:0010096!1.81e-54!3;UBERON:0002298!5.91e-21!8;UBERON:0001301!2.25e-19!1;UBERON:0001882!2.71e-19!1;UBERON:0005403!2.71e-19!1;UBERON:0004733!3.30e-14!12;UBERON:0002028!3.30e-14!12;UBERON:0007277!3.30e-14!12;UBERON:0004732!3.63e-13!13;UBERON:0003076!1.70e-11!15;UBERON:0003057!1.70e-11!15;UBERON:0001049!7.67e-08!57;UBERON:0005068!7.67e-08!57;UBERON:0006241!7.67e-08!57;UBERON:0007135!7.67e-08!57;UBERON:0002616!1.40e-07!59;UBERON:0007023!2.30e-07!115;UBERON:0006947!2.47e-07!3;UBERON:0004054!2.47e-07!3;UBERON:0003075!2.48e-07!86;UBERON:0007284!2.48e-07!86;UBERON:0005743!3.02e-07!86;UBERON:0002346!5.33e-07!90 | |ontology_enrichment_uberon=UBERON:0001896!1.81e-54!3;UBERON:0005290!1.81e-54!3;UBERON:0010096!1.81e-54!3;UBERON:0002298!5.91e-21!8;UBERON:0001301!2.25e-19!1;UBERON:0001882!2.71e-19!1;UBERON:0005403!2.71e-19!1;UBERON:0004733!3.30e-14!12;UBERON:0002028!3.30e-14!12;UBERON:0007277!3.30e-14!12;UBERON:0004732!3.63e-13!13;UBERON:0003076!1.70e-11!15;UBERON:0003057!1.70e-11!15;UBERON:0001049!7.67e-08!57;UBERON:0005068!7.67e-08!57;UBERON:0006241!7.67e-08!57;UBERON:0007135!7.67e-08!57;UBERON:0002616!1.40e-07!59;UBERON:0007023!2.30e-07!115;UBERON:0006947!2.47e-07!3;UBERON:0004054!2.47e-07!3;UBERON:0003075!2.48e-07!86;UBERON:0007284!2.48e-07!86;UBERON:0005743!3.02e-07!86;UBERON:0002346!5.33e-07!90 | ||
|ontology_enrichment_uberon_v019=UBERON:0001896;4.09e-23;3!UBERON:0005290;4.09e-23;3!UBERON:0000966;1.40e-14;5!UBERON:0005388;1.40e-14;5!UBERON:0001802;1.40e-14;5!UBERON:0000970;2.41e-14;20!UBERON:0002104;1.02e-13;21!UBERON:0000020;1.25e-12;23!UBERON:0002298;2.74e-12;6!UBERON:0001032;3.75e-12;24!UBERON:0004456;3.75e-12;24!UBERON:0004733;8.38e-07;12!UBERON:0002028;8.38e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,4.09e-23,3;UBERON:0005290,4.09e-23,3;UBERON:0010096,4.09e-23,3;UBERON:0000970,1.02e-13,21;UBERON:0002104,1.02e-13,21;UBERON:0000966,2.19e-12,6;UBERON:0005388,2.19e-12,6;UBERON:0001802,2.19e-12,6;UBERON:0002298,2.74e-12,6;UBERON:0000020,3.75e-12,24;UBERON:0001032,3.75e-12,24;UBERON:0004456,3.75e-12,24;UBERON:0004733,8.38e-07,12;UBERON:0002028,8.38e-07,12;UBERON:0007277,8.38e-07,12 | |||
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|short_description=p5@ABCA4 | |short_description=p5@ABCA4 | ||
}} | }} |
Latest revision as of 22:43, 19 September 2015
Short description: | p5@ABCA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ABCA4_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 41bp_to_ENST00000535735_5end |
EntrezGene: | ABCA4 |
HGNC: | 34 |
UniProt: | F5H6E5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 4.09e-23 | 3 |
myelencephalon | 4.09e-23 | 3 |
future myelencephalon | 4.09e-23 | 3 |
eye | 1.02e-13 | 21 |
visual system | 1.02e-13 | 21 |
retina | 2.19e-12 | 6 |
photoreceptor array | 2.19e-12 | 6 |
posterior segment of eyeball | 2.19e-12 | 6 |
brainstem | 2.74e-12 | 6 |
sense organ | 3.75e-12 | 24 |
sensory system | 3.75e-12 | 24 |
entire sense organ system | 3.75e-12 | 24 |
segmental subdivision of hindbrain | 8.38e-07 | 12 |
hindbrain | 8.38e-07 | 12 |
presumptive hindbrain | 8.38e-07 | 12 |