FFCP PHASE1:Hg19::chrX:150565653..150565694,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=203547 | |EntrezGene=203547 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22082 | |HGNC=22082 | ||
|TSSclassifier=strong | |||
|UniProt=Q3ZAQ7 | |UniProt=Q3ZAQ7 | ||
|association_with_transcript=0bp_to_ENST00000330374,NM_001017980_5end | |association_with_transcript=0bp_to_ENST00000330374,NM_001017980_5end | ||
|cluster_id=chrX:150565653..150565694,+ | |||
|description=CAGE_peak_1_at_VMA21_5end | |description=CAGE_peak_1_at_VMA21_5end | ||
|id=chrX:150565653..150565694,+ | |id=chrX:150565653..150565694,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!3.44e-19!235;DOID:14566!5.99e-19!239;DOID:0050687!8.09e-10!143;DOID:2531!5.09e-09!51;DOID:0060083!5.09e-09!51;DOID:1240!5.44e-09!39;DOID:8692!7.54e-09!31;DOID:305!2.80e-08!106;DOID:0050686!6.02e-08!137 | |ontology_enrichment_disease=DOID:162!3.44e-19!235;DOID:14566!5.99e-19!239;DOID:0050687!8.09e-10!143;DOID:2531!5.09e-09!51;DOID:0060083!5.09e-09!51;DOID:1240!5.44e-09!39;DOID:8692!7.54e-09!31;DOID:305!2.80e-08!106;DOID:0050686!6.02e-08!137 | ||
|ontology_enrichment_disease_v019=DOID:8692;1.25e-08;31!DOID:1240;1.76e-07;39 | |ontology_enrichment_disease_v019=DOID:8692;1.25e-08;31!DOID:1240;1.76e-07;39 | ||
|ontology_enrichment_disease_v019_2=DOID:162,3.44e-19,235;DOID:14566,5.99e-19,239;DOID:0050687,8.09e-10,143;DOID:2531,5.09e-09,51;DOID:0060083,5.09e-09,51;DOID:1240,5.44e-09,39;DOID:8692,7.54e-09,31;DOID:305,2.80e-08,106;DOID:0050686,6.02e-08,137 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.84e-12!94;UBERON:0001016!2.84e-12!94;UBERON:0001017!4.01e-12!82;UBERON:0005743!6.96e-12!86;UBERON:0001049!4.78e-09!57;UBERON:0005068!4.78e-09!57;UBERON:0006241!4.78e-09!57;UBERON:0007135!4.78e-09!57;UBERON:0000955!4.82e-09!69;UBERON:0006238!4.82e-09!69;UBERON:0002346!1.47e-08!90;UBERON:0003075!2.94e-08!86;UBERON:0007284!2.94e-08!86;UBERON:0000924!1.82e-07!173;UBERON:0006601!1.82e-07!173;UBERON:0003080!3.40e-07!42;UBERON:0004121!3.62e-07!169;UBERON:0002616!5.24e-07!59;UBERON:0003056!6.59e-07!61;UBERON:0002780!8.04e-07!41;UBERON:0001890!8.04e-07!41;UBERON:0006240!8.04e-07!41 | |ontology_enrichment_uberon=UBERON:0000073!2.84e-12!94;UBERON:0001016!2.84e-12!94;UBERON:0001017!4.01e-12!82;UBERON:0005743!6.96e-12!86;UBERON:0001049!4.78e-09!57;UBERON:0005068!4.78e-09!57;UBERON:0006241!4.78e-09!57;UBERON:0007135!4.78e-09!57;UBERON:0000955!4.82e-09!69;UBERON:0006238!4.82e-09!69;UBERON:0002346!1.47e-08!90;UBERON:0003075!2.94e-08!86;UBERON:0007284!2.94e-08!86;UBERON:0000924!1.82e-07!173;UBERON:0006601!1.82e-07!173;UBERON:0003080!3.40e-07!42;UBERON:0004121!3.62e-07!169;UBERON:0002616!5.24e-07!59;UBERON:0003056!6.59e-07!61;UBERON:0002780!8.04e-07!41;UBERON:0001890!8.04e-07!41;UBERON:0006240!8.04e-07!41 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.16e-12,89;UBERON:0001017,9.70e-12,81;UBERON:0000955,1.09e-08,68;UBERON:0006238,1.09e-08,68;UBERON:0001049,1.14e-08,56;UBERON:0005068,1.14e-08,56;UBERON:0006241,1.14e-08,56;UBERON:0007135,1.14e-08,56;UBERON:0002346,5.04e-08,86;UBERON:0003075,1.00e-07,82;UBERON:0007284,1.00e-07,82;UBERON:0000073,1.12e-07,53;UBERON:0002616,1.12e-07,53;UBERON:0011216,2.22e-07,223;UBERON:0010314,6.74e-07,132;UBERON:0003056,7.52e-07,61;UBERON:0002780,8.04e-07,41;UBERON:0001890,8.04e-07,41;UBERON:0003080,8.04e-07,41;UBERON:0006240,8.04e-07,41;UBERON:0004121,9.21e-07,171;UBERON:0000924,9.21e-07,171;UBERON:0006601,9.21e-07,171 | |||
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| ||
|short_description=p1@VMA21 | |short_description=p1@VMA21 | ||
}} | }} |
Latest revision as of 22:30, 19 September 2015
Short description: | p1@VMA21 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VMA21_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000330374, NM_001017980_5end |
EntrezGene: | VMA21 |
HGNC: | 22082 |
UniProt: | Q3ZAQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 4.16e-12 | 89 |
central nervous system | 9.70e-12 | 81 |
brain | 1.09e-08 | 68 |
future brain | 1.09e-08 | 68 |
neural tube | 1.14e-08 | 56 |
neural rod | 1.14e-08 | 56 |
future spinal cord | 1.14e-08 | 56 |
neural keel | 1.14e-08 | 56 |
neurectoderm | 5.04e-08 | 86 |
neural plate | 1.00e-07 | 82 |
presumptive neural plate | 1.00e-07 | 82 |
regional part of nervous system | 1.12e-07 | 53 |
regional part of brain | 1.12e-07 | 53 |
organ system subdivision | 2.22e-07 | 223 |
structure with developmental contribution from neural crest | 6.74e-07 | 132 |
pre-chordal neural plate | 7.52e-07 | 61 |
regional part of forebrain | 8.04e-07 | 41 |
forebrain | 8.04e-07 | 41 |
anterior neural tube | 8.04e-07 | 41 |
future forebrain | 8.04e-07 | 41 |
ectoderm-derived structure | 9.21e-07 | 171 |
ectoderm | 9.21e-07 | 171 |
presumptive ectoderm | 9.21e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.44e-19 | 235 |
disease of cellular proliferation | 5.99e-19 | 239 |
cell type cancer | 8.09e-10 | 143 |
hematologic cancer | 5.09e-09 | 51 |
immune system cancer | 5.09e-09 | 51 |
leukemia | 5.44e-09 | 39 |
myeloid leukemia | 7.54e-09 | 31 |
carcinoma | 2.80e-08 | 106 |
organ system cancer | 6.02e-08 | 137 |