FFCP PHASE1:Hg19::chr1:94486901..94486931,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=24 | |EntrezGene=24 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34 | |HGNC=34 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000470771_5end | |association_with_transcript=0bp_to_ENST00000470771_5end | ||
|cluster_id=chr1:94486901..94486931,- | |||
|description=CAGE_peak_3_at_ABCA4_5end | |description=CAGE_peak_3_at_ABCA4_5end | ||
|id=chr1:94486901..94486931,- | |id=chr1:94486901..94486931,- | ||
|ontology_enrichment_celltype=CL:0000066!1.75e-17!254;CL:0002150!1.89e-09!3;CL:0000861!1.89e-09!3;CL:0000159!9.22e-07!2 | |ontology_enrichment_celltype=CL:0000066!1.75e-17!254;CL:0002150!1.89e-09!3;CL:0000861!1.89e-09!3;CL:0000159!9.22e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000159;1.63e-25;2!CL:0000319;1.18e-13;1!CL:0000313;1.18e-13;1!CL:0002149;1.72e-09;6!CL:0002255;1.72e-09;6!CL:1000415;1.81e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000159,1.27e-25,2;CL:0000319,9.73e-14,1;CL:0000313,1.10e-13,1;CL:0002149,1.68e-09,6;CL:0002255,1.68e-09,6;CL:1000415,1.99e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.18e-13;1 | |||
|ontology_enrichment_disease=DOID:305!3.52e-27!106;DOID:0050687!3.04e-22!143;DOID:162!1.84e-15!235;DOID:14566!7.15e-15!239;DOID:299!6.94e-09!25;DOID:1749!9.69e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2152;1.18e-13;1!DOID:3030;1.18e-13;1!DOID:299;1.44e-12;25!DOID:3001;1.72e-09;6!DOID:120;9.74e-08;27!DOID:193;3.24e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,9.73e-14,1;DOID:2152,1.10e-13,1;DOID:305,7.26e-13,106;DOID:299,1.37e-12,25;DOID:3001,1.68e-09,6;DOID:0050687,3.58e-09,143;DOID:120,9.57e-08,27;DOID:162,2.76e-07,235;DOID:193,3.19e-07,29;DOID:14566,4.25e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.86e-23!9;UBERON:0008947!2.80e-20!38;UBERON:0003258!2.80e-20!38;UBERON:0000065!3.61e-16!53;UBERON:0001004!8.66e-13!72;UBERON:0000072!2.32e-12!46;UBERON:0001557!5.54e-10!19;UBERON:0000077!3.93e-08!130;UBERON:0001041!4.27e-08!98;UBERON:0004119!1.30e-07!169;UBERON:0000925!1.30e-07!169;UBERON:0006595!1.30e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.18e-13;1!UBERON:0004911;1.18e-13;1!UBERON:0001785;1.18e-13;1!UBERON:0002464;1.18e-13;1!UBERON:0004904;1.18e-13;1!UBERON:0001021;1.18e-13;1!UBERON:0003714;1.81e-07;2!UBERON:0005162;1.81e-07;2!UBERON:0000122;1.81e-07;2!UBERON:0004909;1.81e-07;2!UBERON:0000995;2.53e-07;17!UBERON:0003975;6.09e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,1.10e-13,1;UBERON:0000941,1.25e-13,1;UBERON:0001785,1.25e-13,1;UBERON:0002464,1.25e-13,1;UBERON:0004904,1.25e-13,1;UBERON:0001021,1.25e-13,1;UBERON:0003902,1.25e-13,1;UBERON:0005425,1.25e-13,1;UBERON:0004909,1.75e-07,2;UBERON:0003714,1.87e-07,2;UBERON:0005162,1.87e-07,2;UBERON:0000122,1.87e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.218441372130172,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709840800239063,1.18009283054671,0.723033089650446,0.772057809126758,0.871517776369625,0.71181185733329,0.539325232640658,0.784885860501384,1.15424147083917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,2.27407504055985,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0.19924798825107,0,0,0.102268682502155,0,0,0.629078458031288,0,0,0,0,0,0,0,0,0.260427761085233,0,0,0.568967241427498,0.762760950878299,0.472775363535873,0,0,0,0,0,0,0,0,0,2.50558466093677,0,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9845336444171,0,8.50442717842141,0.489961987071888,0.34823682632161,0,0,1.83837029449262,2.63121541510268,1.8065400551706,0,0,0.225980740780532,0.274083849293502,0,0,1.36885967914362,0,0,0.999048047910651,0,0,0,0,0,0,0,0.209205692624666,1.93796613509011,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.45778026780006,0,0.628817220398664,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.499921631848426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0.244736704506468,0,0,0.877136198314828,0,0.38582807654183,0,0,0,0,0,0,0,0,0,1.47463745252232,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0.0981477185010256,0.235939446695481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638812138197976,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,1.4541206133713,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645499848534087,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.218441372130172,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709840800239063,1.18009283054671,0.723033089650446,0.772057809126758,0.871517776369625,0.71181185733329,0.539325232640658,0.784885860501384,1.15424147083917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,2.27407504055985,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0.19924798825107,0,0,0.102268682502155,0,0,0.629078458031288,0,0,0,0,0,0,0,0,0.260427761085233,0,0,0.568967241427498,0.762760950878299,0.472775363535873,0,0,0,0,0,0,0,0,0,2.50558466093677,0,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9845336444171,0,8.50442717842141,0.489961987071888,0.34823682632161,0,0,1.83837029449262,2.63121541510268,1.8065400551706,0,0,0.225980740780532,0.274083849293502,0,0,1.36885967914362,0,0,0.999048047910651,0,0,0,0,0,0,0,0.209205692624666,1.93796613509011,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.45778026780006,0,0.628817220398664,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.499921631848426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0.244736704506468,0,0,0.877136198314828,0,0.38582807654183,0,0,0,0,0,0,0,0,0,1.47463745252232,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0.0981477185010256,0.235939446695481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638812138197976,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,1.4541206133713,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645499848534087,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@ABCA4 | |short_description=p3@ABCA4 | ||
}} | }} |
Latest revision as of 22:30, 19 September 2015
Short description: | p3@ABCA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ABCA4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000470771_5end |
EntrezGene: | ABCA4 |
HGNC: | 34 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
seromucus secreting cell | 1.27e-25 | 2 |
mucus secreting cell | 9.73e-14 | 1 |
serous secreting cell | 1.10e-13 | 1 |
epithelial cell of uterus | 1.68e-09 | 6 |
stromal cell of endometrium | 1.68e-09 | 6 |
epithelial cell of gall bladder | 1.99e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 1.10e-13 | 1 |
cranial nerve II | 1.25e-13 | 1 |
cranial nerve | 1.25e-13 | 1 |
nerve trunk | 1.25e-13 | 1 |
nerve connecting eye with brain | 1.25e-13 | 1 |
nerve | 1.25e-13 | 1 |
retinal neural layer | 1.25e-13 | 1 |
presumptive neural retina | 1.25e-13 | 1 |
epithelium of gonad | 1.75e-07 | 2 |
neural tissue | 1.87e-07 | 2 |
multi cell component structure | 1.87e-07 | 2 |
neuron projection bundle | 1.87e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 9.73e-14 | 1 |
ovary epithelial cancer | 1.10e-13 | 1 |
carcinoma | 7.26e-13 | 106 |
adenocarcinoma | 1.37e-12 | 25 |
female reproductive endometrioid cancer | 1.68e-09 | 6 |
cell type cancer | 3.58e-09 | 143 |
female reproductive organ cancer | 9.57e-08 | 27 |
cancer | 2.76e-07 | 235 |
reproductive organ cancer | 3.19e-07 | 29 |
disease of cellular proliferation | 4.25e-07 | 239 |