FFCP PHASE1:Hg19::chr6:112575917..112575931,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3910 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6484 | |||
|TSSclassifier=strong | |||
|UniProt=Q16363,E5RHF3 | |||
|association_with_transcript=0bp_to_ENST00000230538,ENST00000519932_5end | |||
|cluster_id=chr6:112575917..112575931,- | |||
|description=CAGE_peak_4_at_LAMA4_5end | |||
|id=chr6:112575917..112575931,- | |||
|ontology_enrichment_celltype=CL:0000222!5.38e-30!119;CL:0000055!8.80e-20!180;CL:0000115!8.27e-19!35;CL:0002139!1.39e-18!24;CL:0000187!1.52e-16!54;CL:0000183!1.58e-16!59;CL:0000213!3.99e-16!57;CL:0000215!3.99e-16!57;CL:0000680!6.07e-16!57;CL:0000056!6.07e-16!57;CL:0000355!6.07e-16!57;CL:0000071!2.22e-14!18;CL:0002546!2.22e-14!18;CL:0002078!1.14e-13!44;CL:0000192!2.09e-13!42;CL:0000514!2.09e-13!42;CL:0000393!2.30e-13!60;CL:0000211!2.30e-13!60;CL:0000057!2.26e-12!75;CL:0000359!3.41e-12!32;CL:0000220!5.07e-09!246;CL:0002321!1.17e-08!248;CL:1000413!3.98e-08!9;CL:0002494!7.36e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.27e-26;24!CL:0000115;1.20e-22;36!CL:0000071;1.78e-20;18!CL:0000359;6.93e-14;32!CL:0002078;4.09e-13;45!CL:0000213;6.22e-13;58!CL:0000215;6.22e-13;58!CL:1000413;2.55e-11;9!CL:0000192;3.67e-10;43!CL:0002494;4.23e-09;16!CL:0000187;8.48e-09;55!CL:0002543;1.28e-08;6!CL:0002544;4.27e-08;6!CL:0002138;1.08e-07;6!CL:0000393;3.66e-07;61!CL:0000211;3.66e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,7.11e-34,121;CL:0000115,4.40e-27,36;CL:0002139,9.88e-27,24;CL:0000071,1.67e-20,18;CL:0002546,1.67e-20,18;CL:0000213,1.86e-20,58;CL:0000215,1.86e-20,58;CL:0002078,2.79e-20,45;CL:0000187,2.31e-16,55;CL:0000680,7.09e-15,58;CL:0000056,7.09e-15,58;CL:0000355,7.09e-15,58;CL:0000192,1.17e-14,43;CL:0000514,1.17e-14,43;CL:0000359,1.24e-14,32;CL:0000393,1.50e-13,61;CL:0000211,1.50e-13,61;CL:1000413,2.90e-11,9;CL:0002321,1.05e-10,250;CL:0002494,4.94e-09,16;CL:0002543,1.28e-08,6;CL:0002544,4.82e-08,6;CL:0005020,9.00e-08,6;CL:0002138,9.00e-08,6;CL:0005022,9.00e-08,6;CL:0000057,1.57e-07,76 | |||
|ontology_enrichment_development_v019=CL:0002546;1.78e-20;18!CL:0000514;3.67e-10;43!CL:0000222;4.11e-10;121!CL:0000355;7.88e-08;58!CL:0005022;1.08e-07;6 | |||
|ontology_enrichment_disease=DOID:2394!5.28e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.27e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.78e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!3.34e-37!79;UBERON:0007798!3.34e-37!79;UBERON:0000055!2.51e-33!69;UBERON:0004872!2.05e-32!84;UBERON:0001009!2.08e-31!113;UBERON:0004535!3.65e-31!110;UBERON:0001981!2.24e-29!60;UBERON:0007500!2.24e-29!60;UBERON:0004537!2.24e-29!60;UBERON:0006965!2.24e-29!60;UBERON:0003914!3.98e-25!118;UBERON:0001637!2.09e-21!42;UBERON:0003509!2.09e-21!42;UBERON:0004572!2.09e-21!42;UBERON:0000490!3.70e-20!138;UBERON:0004573!6.16e-17!33;UBERON:0004571!6.16e-17!33;UBERON:0001134!4.49e-16!61;UBERON:0002036!4.49e-16!61;UBERON:0003082!4.49e-16!61;UBERON:0002385!6.60e-16!63;UBERON:0001015!6.60e-16!63;UBERON:0000383!6.60e-16!63;UBERON:0000477!8.93e-16!286;UBERON:0004290!2.92e-15!70;UBERON:0004111!3.14e-15!241;UBERON:0001986!2.22e-14!18;UBERON:0004638!2.22e-14!18;UBERON:0004852!2.22e-14!18;UBERON:0000119!4.99e-14!312;UBERON:0000914!8.55e-14!83;UBERON:0002329!8.55e-14!83;UBERON:0003077!8.55e-14!83;UBERON:0003059!8.55e-14!83;UBERON:0007282!8.55e-14!83;UBERON:0009618!8.55e-14!83;UBERON:0007285!8.55e-14!83;UBERON:0000487!2.37e-13!22;UBERON:0000483!3.55e-13!309;UBERON:0000025!7.36e-13!194;UBERON:0000947!6.53e-12!21;UBERON:0010191!6.53e-12!21;UBERON:0000486!2.15e-11!82;UBERON:0005256!2.39e-11!143;UBERON:0006914!3.71e-11!25;UBERON:0002100!3.03e-09!216;UBERON:0000475!7.30e-09!365;UBERON:0007100!1.44e-08!27;UBERON:0000948!1.86e-08!24;UBERON:0005498!1.86e-08!24;UBERON:0004140!1.86e-08!24;UBERON:0009881!1.86e-08!24;UBERON:0004141!1.86e-08!24;UBERON:0003084!1.86e-08!24;UBERON:0007005!1.86e-08!24;UBERON:0004139!1.86e-08!24;UBERON:0004291!1.86e-08!24;UBERON:0003915!3.98e-08!9;UBERON:0004700!3.98e-08!9;UBERON:0001917!3.98e-08!9;UBERON:0000468!9.36e-08!659;UBERON:0000467!2.78e-07!625;UBERON:0000480!3.75e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.52e-21;42!UBERON:0003509;3.52e-21;42!UBERON:0004572;3.52e-21;42!UBERON:0004573;4.30e-21;33!UBERON:0004571;4.30e-21;33!UBERON:0000055;9.33e-21;65!UBERON:0004638;1.78e-20;18!UBERON:0001986;1.78e-20;18!UBERON:0004852;1.78e-20;18!UBERON:0000487;8.28e-20;22!UBERON:0007500;3.15e-19;56!UBERON:0001981;3.15e-19;56!UBERON:0004537;3.15e-19;56!UBERON:0006914;1.84e-16;25!UBERON:0002049;3.17e-15;75!UBERON:0007798;3.17e-15;75!UBERON:0000947;1.34e-14;21!UBERON:0010191;1.34e-14;21!UBERON:0000490;2.46e-13;33!UBERON:0003914;3.73e-13;74!UBERON:0004535;1.62e-11;109!UBERON:0003915;2.55e-11;9!UBERON:0004700;2.55e-11;9!UBERON:0001917;2.55e-11;9!UBERON:0001009;1.59e-10;112!UBERON:0000948;1.08e-09;22!UBERON:0000025;3.44e-08;93!UBERON:0007100;6.34e-08;25!UBERON:0001135;1.57e-07;15!UBERON:0003513;1.97e-07;7!UBERON:0001473;5.22e-07;8!UBERON:0004536;5.22e-07;8!UBERON:0006558;5.22e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,3.10e-41,68;UBERON:0004872,5.93e-41,83;UBERON:0002049,9.54e-41,78;UBERON:0007798,9.54e-41,78;UBERON:0004535,1.99e-38,109;UBERON:0001009,1.19e-36,112;UBERON:0007500,2.77e-36,59;UBERON:0001981,2.77e-36,59;UBERON:0004537,2.77e-36,59;UBERON:0006965,2.77e-36,59;UBERON:0003914,9.97e-35,117;UBERON:0001637,4.10e-28,42;UBERON:0003509,4.10e-28,42;UBERON:0004572,4.10e-28,42;UBERON:0000490,2.27e-24,148;UBERON:0004573,1.33e-22,33;UBERON:0004571,1.33e-22,33;UBERON:0004638,1.67e-20,18;UBERON:0001986,1.67e-20,18;UBERON:0004852,1.67e-20,18;UBERON:0000487,7.89e-20,22;UBERON:0007503,5.53e-17,78;UBERON:0006914,1.76e-16,25;UBERON:0002385,4.43e-15,64;UBERON:0001015,4.43e-15,64;UBERON:0000383,4.43e-15,64;UBERON:0001134,6.04e-15,62;UBERON:0002036,6.04e-15,62;UBERON:0003082,6.04e-15,62;UBERON:0000947,9.05e-15,21;UBERON:0010191,9.05e-15,21;UBERON:0000926,1.08e-14,315;UBERON:0004120,1.08e-14,315;UBERON:0006603,1.08e-14,315;UBERON:0004111,1.77e-14,240;UBERON:0005256,1.96e-14,122;UBERON:0002329,3.11e-14,71;UBERON:0003059,3.11e-14,71;UBERON:0007282,3.11e-14,71;UBERON:0004290,3.11e-14,71;UBERON:0009618,3.11e-14,71;UBERON:0003077,7.51e-14,72;UBERON:0007285,7.51e-14,72;UBERON:0007524,1.77e-13,73;UBERON:0000025,2.36e-13,192;UBERON:0000119,2.28e-12,309;UBERON:0000483,2.17e-11,306;UBERON:0003915,2.90e-11,9;UBERON:0004700,2.90e-11,9;UBERON:0001917,2.90e-11,9;UBERON:0000948,8.15e-11,24;UBERON:0005498,8.15e-11,24;UBERON:0004140,8.15e-11,24;UBERON:0009881,8.15e-11,24;UBERON:0004141,8.15e-11,24;UBERON:0003084,8.15e-11,24;UBERON:0007005,8.15e-11,24;UBERON:0004139,8.15e-11,24;UBERON:0004291,8.15e-11,24;UBERON:0000486,2.52e-10,83;UBERON:0003081,6.46e-10,203;UBERON:0003104,9.10e-10,160;UBERON:0009142,9.10e-10,160;UBERON:0002100,1.40e-09,199;UBERON:0007100,5.66e-09,27;UBERON:0001135,6.41e-08,15;UBERON:0003513,1.91e-07,7;UBERON:0001473,4.93e-07,8;UBERON:0004536,4.93e-07,8;UBERON:0006558,4.93e-07,8 | |||
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| |||
|short_description=p4@LAMA4 | |||
}} |
Latest revision as of 22:15, 19 September 2015
Short description: | p4@LAMA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LAMA4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000230538, ENST00000519932_5end |
EntrezGene: | LAMA4 |
HGNC: | 6484 |
UniProt: | Q16363E5RHF3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 7.11e-34 | 121 |
endothelial cell | 4.40e-27 | 36 |
endothelial cell of vascular tree | 9.88e-27 | 24 |
blood vessel endothelial cell | 1.67e-20 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.67e-20 | 18 |
lining cell | 1.86e-20 | 58 |
barrier cell | 1.86e-20 | 58 |
meso-epithelial cell | 2.79e-20 | 45 |
muscle cell | 2.31e-16 | 55 |
muscle precursor cell | 7.09e-15 | 58 |
myoblast | 7.09e-15 | 58 |
multi-potent skeletal muscle stem cell | 7.09e-15 | 58 |
smooth muscle cell | 1.17e-14 | 43 |
smooth muscle myoblast | 1.17e-14 | 43 |
vascular associated smooth muscle cell | 1.24e-14 | 32 |
electrically responsive cell | 1.50e-13 | 61 |
electrically active cell | 1.50e-13 | 61 |
endothelial cell of artery | 2.90e-11 | 9 |
embryonic cell | 1.05e-10 | 250 |
cardiocyte | 4.94e-09 | 16 |
vein endothelial cell | 1.28e-08 | 6 |
aortic endothelial cell | 4.82e-08 | 6 |
lymphangioblast | 9.00e-08 | 6 |
endothelial cell of lymphatic vessel | 9.00e-08 | 6 |
vascular lymphangioblast | 9.00e-08 | 6 |
fibroblast | 1.57e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.78e-11 | 14 |