FFCP PHASE1:Hg19::chr3:120401003..120401030,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3081 | |EntrezGene=3081 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4892 | |HGNC=4892 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-19bp_to_ENST00000466528_5end | |association_with_transcript=-19bp_to_ENST00000466528_5end | ||
|cluster_id=chr3:120401003..120401030,- | |||
|description=CAGE_peak_2_at_HGD_5end | |description=CAGE_peak_2_at_HGD_5end | ||
|id=chr3:120401003..120401030,- | |id=chr3:120401003..120401030,- | ||
|ontology_enrichment_celltype=CL:0000181!1.51e-08!12;CL:0000417!1.51e-08!12;CL:0000668!1.51e-08!12;CL:0000414!1.51e-08!12;CL:0000412!1.51e-08!12;CL:0000182!1.51e-08!12 | |ontology_enrichment_celltype=CL:0000181!1.51e-08!12;CL:0000417!1.51e-08!12;CL:0000668!1.51e-08!12;CL:0000414!1.51e-08!12;CL:0000412!1.51e-08!12;CL:0000182!1.51e-08!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.27e-15;12!CL:0002149;5.16e-11;6!CL:0002255;5.16e-11;6!CL:0000159;1.97e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.13e-15,12;CL:0000223,5.11e-12,58;CL:0002149,4.90e-11,6;CL:0002255,4.90e-11,6;CL:0000159,2.06e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0009497;7.77e-24;13!UBERON:0004161;2.38e-22;11!UBERON:0003104;4.81e-19;31!UBERON:0001041;1.98e-09;30!CL:0000223;2.20e-07;58 | |||
|ontology_enrichment_disease=DOID:299!3.81e-14!25;DOID:305!3.38e-09!106 | |ontology_enrichment_disease=DOID:299!3.81e-14!25;DOID:305!3.38e-09!106 | ||
|ontology_enrichment_disease_v019=DOID:299;1.76e-17;25!DOID:3001;5.16e-11;6!DOID:4468;8.19e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:299,1.80e-17,25;DOID:305,1.18e-11,106;DOID:3001,4.90e-11,6;DOID:4468,8.19e-10,2;DOID:0050687,2.40e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0003929!4.11e-15!54;UBERON:0005172!6.73e-15!55;UBERON:0005173!6.73e-15!55;UBERON:0009497!2.41e-14!25;UBERON:0000015!2.41e-14!25;UBERON:0002423!2.41e-14!25;UBERON:0006235!2.41e-14!25;UBERON:0004161!2.41e-14!25;UBERON:0009854!2.01e-13!23;UBERON:0009856!2.86e-13!26;UBERON:0002417!8.63e-13!61;UBERON:0000916!8.63e-13!61;UBERON:0007023!2.90e-12!115;UBERON:0002368!3.83e-12!35;UBERON:0008835!4.04e-12!22;UBERON:0003894!4.04e-12!22;UBERON:0007499!5.11e-12!25;UBERON:0002530!1.37e-10!59;UBERON:0005911!1.45e-10!82;UBERON:0001007!2.42e-10!155;UBERON:0001555!2.42e-10!155;UBERON:0007026!2.42e-10!155;UBERON:0002107!4.34e-10!19;UBERON:0006925!4.34e-10!19;UBERON:0008836!4.34e-10!19;UBERON:0000077!7.11e-10!130;UBERON:0004921!8.79e-10!129;UBERON:0004185!8.79e-10!129;UBERON:0000949!9.79e-10!45;UBERON:0005177!1.12e-09!107;UBERON:0005057!1.55e-09!26;UBERON:0004119!2.61e-09!169;UBERON:0000925!2.61e-09!169;UBERON:0006595!2.61e-09!169;UBERON:0004175!5.64e-08!25;UBERON:0002365!8.55e-08!31;UBERON:0002330!8.55e-08!31;UBERON:0000466!1.11e-07!126;UBERON:0001041!1.92e-07!98;UBERON:0009569!2.47e-07!113;UBERON:0000481!2.73e-07!347;UBERON:0002113!3.01e-07!27;UBERON:0003918!3.01e-07!27;UBERON:0005095!3.01e-07!27;UBERON:0007687!3.01e-07!27;UBERON:0006947!4.34e-07!3;UBERON:0004054!4.34e-07!3;UBERON:0000489!8.58e-07!32 | |ontology_enrichment_uberon=UBERON:0003929!4.11e-15!54;UBERON:0005172!6.73e-15!55;UBERON:0005173!6.73e-15!55;UBERON:0009497!2.41e-14!25;UBERON:0000015!2.41e-14!25;UBERON:0002423!2.41e-14!25;UBERON:0006235!2.41e-14!25;UBERON:0004161!2.41e-14!25;UBERON:0009854!2.01e-13!23;UBERON:0009856!2.86e-13!26;UBERON:0002417!8.63e-13!61;UBERON:0000916!8.63e-13!61;UBERON:0007023!2.90e-12!115;UBERON:0002368!3.83e-12!35;UBERON:0008835!4.04e-12!22;UBERON:0003894!4.04e-12!22;UBERON:0007499!5.11e-12!25;UBERON:0002530!1.37e-10!59;UBERON:0005911!1.45e-10!82;UBERON:0001007!2.42e-10!155;UBERON:0001555!2.42e-10!155;UBERON:0007026!2.42e-10!155;UBERON:0002107!4.34e-10!19;UBERON:0006925!4.34e-10!19;UBERON:0008836!4.34e-10!19;UBERON:0000077!7.11e-10!130;UBERON:0004921!8.79e-10!129;UBERON:0004185!8.79e-10!129;UBERON:0000949!9.79e-10!45;UBERON:0005177!1.12e-09!107;UBERON:0005057!1.55e-09!26;UBERON:0004119!2.61e-09!169;UBERON:0000925!2.61e-09!169;UBERON:0006595!2.61e-09!169;UBERON:0004175!5.64e-08!25;UBERON:0002365!8.55e-08!31;UBERON:0002330!8.55e-08!31;UBERON:0000466!1.11e-07!126;UBERON:0001041!1.92e-07!98;UBERON:0009569!2.47e-07!113;UBERON:0000481!2.73e-07!347;UBERON:0002113!3.01e-07!27;UBERON:0003918!3.01e-07!27;UBERON:0005095!3.01e-07!27;UBERON:0007687!3.01e-07!27;UBERON:0006947!4.34e-07!3;UBERON:0004054!4.34e-07!3;UBERON:0000489!8.58e-07!32 | ||
|ontology_enrichment_uberon_v019=UBERON:0002423;7.46e-21;25!UBERON:0002107;7.04e-16;19!UBERON:0006925;7.04e-16;19!UBERON:0002368;4.20e-13;33!UBERON:0002365;4.37e-11;31!UBERON:0002330;4.37e-11;31!UBERON:0005172;4.63e-10;52!UBERON:0005173;4.63e-10;52!UBERON:0000341;6.55e-09;2!UBERON:0002417;4.35e-08;58!UBERON:0000916;4.35e-08;58!UBERON:0000949;8.16e-08;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009497,5.82e-21,25;UBERON:0000015,5.82e-21,25;UBERON:0002423,5.82e-21,25;UBERON:0006235,5.82e-21,25;UBERON:0004161,5.82e-21,25;UBERON:0003929,9.31e-18,54;UBERON:0005172,1.48e-17,54;UBERON:0005173,1.48e-17,54;UBERON:0008835,8.07e-17,22;UBERON:0003894,8.07e-17,22;UBERON:0009854,5.33e-16,23;UBERON:0002107,6.38e-16,19;UBERON:0006925,6.38e-16,19;UBERON:0008836,6.38e-16,19;UBERON:0002417,2.15e-15,60;UBERON:0000916,2.15e-15,60;UBERON:0007499,1.47e-14,25;UBERON:0002368,2.55e-14,35;UBERON:0009856,6.40e-14,26;UBERON:0005911,9.83e-12,82;UBERON:0002365,2.34e-11,31;UBERON:0002330,2.34e-11,31;UBERON:0000949,1.46e-10,45;UBERON:0002530,1.88e-10,59;UBERON:0005177,9.11e-10,101;UBERON:0000341,6.69e-09,2;UBERON:0009569,2.17e-08,112;UBERON:0001007,3.59e-07,145;UBERON:0001555,3.59e-07,145;UBERON:0007026,3.59e-07,145 | |||
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| ||
|short_description=p2@HGD | |short_description=p2@HGD | ||
}} | }} |
Latest revision as of 22:14, 19 September 2015
Short description: | p2@HGD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HGD_5end |
Coexpression cluster: | NA |
Association with transcript: | -19bp_to_ENST00000466528_5end |
EntrezGene: | HGD |
HGNC: | 4892 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.13e-15 | 12 |
endodermal cell | 5.11e-12 | 58 |
epithelial cell of uterus | 4.90e-11 | 6 |
stromal cell of endometrium | 4.90e-11 | 6 |
seromucus secreting cell | 2.06e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
epithelium of foregut-midgut junction | 5.82e-21 | 25 |
anatomical boundary | 5.82e-21 | 25 |
hepatobiliary system | 5.82e-21 | 25 |
foregut-midgut junction | 5.82e-21 | 25 |
septum transversum | 5.82e-21 | 25 |
gut epithelium | 9.31e-18 | 54 |
abdomen element | 1.48e-17 | 54 |
abdominal segment element | 1.48e-17 | 54 |
hepatic diverticulum | 8.07e-17 | 22 |
liver primordium | 8.07e-17 | 22 |
digestive tract diverticulum | 5.33e-16 | 23 |
liver | 6.38e-16 | 19 |
digestive gland | 6.38e-16 | 19 |
liver bud | 6.38e-16 | 19 |
abdominal segment of trunk | 2.15e-15 | 60 |
abdomen | 2.15e-15 | 60 |
epithelial sac | 1.47e-14 | 25 |
endocrine gland | 2.55e-14 | 35 |
sac | 6.40e-14 | 26 |
endo-epithelium | 9.83e-12 | 82 |
exocrine gland | 2.34e-11 | 31 |
exocrine system | 2.34e-11 | 31 |
endocrine system | 1.46e-10 | 45 |
gland | 1.88e-10 | 59 |
trunk region element | 9.11e-10 | 101 |
throat | 6.69e-09 | 2 |
subdivision of trunk | 2.17e-08 | 112 |
digestive system | 3.59e-07 | 145 |
digestive tract | 3.59e-07 | 145 |
primitive gut | 3.59e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 1.80e-17 | 25 |
carcinoma | 1.18e-11 | 106 |
female reproductive endometrioid cancer | 4.90e-11 | 6 |
clear cell adenocarcinoma | 8.19e-10 | 2 |
cell type cancer | 2.40e-08 | 143 |