FFCP PHASE1:Hg19::chr12:6554146..6554159,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=939 | |EntrezGene=939 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11922 | |HGNC=11922 | ||
|TSSclassifier=strong | |||
|UniProt=P26842 | |UniProt=P26842 | ||
|association_with_transcript=95bp_to_NM_001242,uc001qod.2_5end | |association_with_transcript=95bp_to_NM_001242,uc001qod.2_5end | ||
|cluster_id=chr12:6554146..6554159,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_CD27_5end | |description=CAGE_peak_2_at_CD27_5end | ||
|id=chr12:6554146..6554159,+ | |id=chr12:6554146..6554159,+ | ||
|ontology_enrichment_celltype=CL:0000542!1.21e-41!53;CL:0000051!1.21e-41!53;CL:0000838!1.27e-40!52;CL:0000738!5.59e-29!140;CL:0002087!6.59e-25!119;CL:0002031!2.65e-21!124;CL:0000791!3.40e-21!18;CL:0000789!3.40e-21!18;CL:0002420!3.40e-21!18;CL:0002419!3.40e-21!18;CL:0000790!3.40e-21!18;CL:0000037!5.01e-20!172;CL:0000566!5.01e-20!172;CL:0000945!5.89e-20!24;CL:0000826!5.89e-20!24;CL:0000084!1.53e-18!25;CL:0000827!1.53e-18!25;CL:0000988!1.04e-17!182;CL:0002032!1.63e-17!165;CL:0000837!1.63e-17!165;CL:0000625!2.21e-15!11;CL:0000236!4.25e-14!14;CL:0000624!4.64e-09!6 | |ontology_enrichment_celltype=CL:0000542!1.21e-41!53;CL:0000051!1.21e-41!53;CL:0000838!1.27e-40!52;CL:0000738!5.59e-29!140;CL:0002087!6.59e-25!119;CL:0002031!2.65e-21!124;CL:0000791!3.40e-21!18;CL:0000789!3.40e-21!18;CL:0002420!3.40e-21!18;CL:0002419!3.40e-21!18;CL:0000790!3.40e-21!18;CL:0000037!5.01e-20!172;CL:0000566!5.01e-20!172;CL:0000945!5.89e-20!24;CL:0000826!5.89e-20!24;CL:0000084!1.53e-18!25;CL:0000827!1.53e-18!25;CL:0000988!1.04e-17!182;CL:0002032!1.63e-17!165;CL:0000837!1.63e-17!165;CL:0000625!2.21e-15!11;CL:0000236!4.25e-14!14;CL:0000624!4.64e-09!6 | ||
|ontology_enrichment_celltype_v019=CL:0000542;1.84e-32;53!CL:0000791;4.15e-29;18!CL:0000789;4.15e-29;18!CL:0002419;4.15e-29;18!CL:0000945;9.81e-28;24!CL:0000084;5.58e-24;25!CL:0000625;8.98e-21;11!CL:0000236;1.19e-17;13!CL:0000624;5.42e-12;6!CL:0002087;8.55e-11;104!CL:0000898;3.74e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.30e-56,53;CL:0000051,1.30e-56,53;CL:0000838,3.44e-55,52;CL:0002087,1.38e-30,115;CL:0000791,4.20e-29,18;CL:0000789,4.20e-29,18;CL:0002420,4.20e-29,18;CL:0002419,4.20e-29,18;CL:0000790,4.20e-29,18;CL:0000738,5.41e-28,136;CL:0000945,1.01e-27,24;CL:0000826,1.01e-27,24;CL:0000084,6.54e-24,25;CL:0000827,6.54e-24,25;CL:0002031,2.27e-23,120;CL:0000625,8.91e-21,11;CL:0000037,1.49e-19,168;CL:0000236,3.42e-19,14;CL:0000988,9.43e-18,177;CL:0002032,3.51e-17,161;CL:0000837,3.51e-17,161;CL:0000624,5.52e-12,6;CL:0000898,3.74e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000051;1.84e-32;53!CL:0000790;4.15e-29;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.79e-16!115;UBERON:0000178!7.39e-11!15;UBERON:0000179!7.39e-11!15;UBERON:0000463!7.39e-11!15;UBERON:0004177!9.79e-07!7 | |ontology_enrichment_uberon=UBERON:0007023!4.79e-16!115;UBERON:0000178!7.39e-11!15;UBERON:0000179!7.39e-11!15;UBERON:0000463!7.39e-11!15;UBERON:0004177!9.79e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.67e-15;15!UBERON:0000179;5.67e-15;15!UBERON:0000463;5.67e-15;15!UBERON:0002390;6.86e-11;32!UBERON:0004177;8.44e-09;5!UBERON:0005057;8.44e-09;5!UBERON:0002193;1.34e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.37e-15,15;UBERON:0000179,5.37e-15,15;UBERON:0000463,5.37e-15,15;UBERON:0004177,5.98e-09,7;UBERON:0005057,5.98e-09,7 | |||
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| ||
|short_description=p2@CD27 | |short_description=p2@CD27 | ||
}} | }} |
Latest revision as of 22:10, 19 September 2015
Short description: | p2@CD27 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CD27_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 95bp_to_NM_001242, uc001qod.2_5end |
EntrezGene: | CD27 |
HGNC: | 11922 |
UniProt: | P26842 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.30e-56 | 53 |
common lymphoid progenitor | 1.30e-56 | 53 |
lymphoid lineage restricted progenitor cell | 3.44e-55 | 52 |
nongranular leukocyte | 1.38e-30 | 115 |
mature alpha-beta T cell | 4.20e-29 | 18 |
alpha-beta T cell | 4.20e-29 | 18 |
immature T cell | 4.20e-29 | 18 |
mature T cell | 4.20e-29 | 18 |
immature alpha-beta T cell | 4.20e-29 | 18 |
leukocyte | 5.41e-28 | 136 |
lymphocyte of B lineage | 1.01e-27 | 24 |
pro-B cell | 1.01e-27 | 24 |
T cell | 6.54e-24 | 25 |
pro-T cell | 6.54e-24 | 25 |
hematopoietic lineage restricted progenitor cell | 2.27e-23 | 120 |
CD8-positive, alpha-beta T cell | 8.91e-21 | 11 |
hematopoietic stem cell | 1.49e-19 | 168 |
B cell | 3.42e-19 | 14 |
hematopoietic cell | 9.43e-18 | 177 |
hematopoietic oligopotent progenitor cell | 3.51e-17 | 161 |
hematopoietic multipotent progenitor cell | 3.51e-17 | 161 |
CD4-positive, alpha-beta T cell | 5.52e-12 | 6 |
naive T cell | 3.74e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 5.37e-15 | 15 |
haemolymphatic fluid | 5.37e-15 | 15 |
organism substance | 5.37e-15 | 15 |
hemopoietic organ | 5.98e-09 | 7 |
immune organ | 5.98e-09 | 7 |